Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005332

Physical Location & Seq

Genomic Coordinates Forward (+)

20195303 .. 20197419

Gene Structure 2117 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G49710.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGGATAACAATAGCGAGCGCAAAGGAAAACGAATCGATAAGGATAATATTCGTGTCAAGCGGAAAACTTTGCAAGCTTTGCTCAATGATTGCCAGAGAGCCCTCGAGTTATTAAACTTAGCCGAAGTCAGTTCTGAAGACGATGAAGATGATAAAAGCACCGGCGAGGGAAGTGGGTCACAAGAGAGCAGGGGAGAAGTTTCTTCTTCCGATCGAGAAGATCCTGAAGCTGATGAATTATATGATCTCATCAAATCCAGGGTTGAATGTGATGACTTCCTTGAAAAGATTGAGTCAGCCCAGGTTTCAGCGCCGCAACATCTTGCTGATAGTAGCTCTTGGGATGTAGTTAGTGAAGATGATCTTTGGGATGATGAAACCATGGCTCAAAGGGAAGAAGATTATGTCCTTGTTAGAGAAGAAGATATAGCAGAGGGCATTGCATGTTTCATGGCTACTTATTTACAATCACTTAAGCAGACAAAGGACTTGACTCCTGAGCAGCTTCAGAAAGCACTTAGCAGGATGTTCTCAGTGAAGAATAGAAAGGGGAAACTTCGGAAAGCCTGGGATGGAAGTAAGGTTGCTTACAACGTAGCGTCATGGAGCGCAACTGTTATAGGGATCTATCAAAACCCCGTGATCCTGAGGGTTGCATCAAAGGCCTTTTGGGCGTCATGTCATGTAATATCGAAGCTCGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

234

Amino Acids

26.4

Weight (kDa)

4.71

Isoelectric Point (pI)

52.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005332)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24590 AT4G24590 AT4G24590 AT4G24590 AT4G24590 AT5G49710 AT5G49710 AT5G49710
fragaria_vesca	FvH4_5g35650 FvH4_5g35650 FvH4_5g35650 FvH4_5g35650
malus_domestica	MD08G1195200.v1.1 MD15G1382900.v1.1
prunus_persica	Prupe.1G528700_v2.0.a1 Prupe.1G528700_v2.0.a1 Prupe.1G528700_v2.0.a1
pyrus_communis	pycom15g34270
rosa_chinensis	RchiOBHm_Chr7g0237181
rosa_laevigata	RLG00000001024
rosa_multiflora	Rmu_sc0011019.1_g000011
rosa_roxburghii	Rroxscaffold_3G00224370
rosa_rugosa	Rorug07G0302500 Rorug07G0302600
rosa_samantha	Rh7AG458800 Rh7BG429300 Rh7CG476500 Rh7DG445800
rosa_wichuraiana	Rw7G038000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	61, 314
AclWI	GGATC	3 cut(s)	215, 632, 637
AcuI	CTGAAG	3 cut(s)	156, 246, 491
AcyI	GRCGYC	1 cut(s)	674
AflII	CTTAAG	1 cut(s)	473
AgsI	TTSAA	2 cut(s)	266, 284
AjnI	CCWGG	3 cut(s)	257, 300, 566
AluBI	AGCT	5 cut(s)	77, 230, 336, 505, 697
AluI	AGCT	5 cut(s)	77, 230, 336, 505, 697
AlwI	GGATC	3 cut(s)	215, 632, 637
Ama87I	CYCGRG	1 cut(s)	104
AoxI	GGCC	1 cut(s)	663
ApeKI	GCWGC	1 cut(s)	502
AspLEI	GCGC	3 cut(s)	21, 313, 611
AvaI	CYCGRG	1 cut(s)	104
AxyI	CCTNAGG	1 cut(s)	647
BanII	GRGCYC	1 cut(s)	103
BbsI	GAAGAC	1 cut(s)	144
BbvI	GCAGC	1 cut(s)	514
BccI	CCATC	1 cut(s)	566
BciT130I	CCWGG	3 cut(s)	259, 302, 568
BfoI	RGCGCY	1 cut(s)	314
BfrI	CTTAAG	1 cut(s)	473
BglI	GCCNNNNNGGC	1 cut(s)	671
BisI	GCNGC	2 cut(s)	314, 503
BlsI	GCNGC	2 cut(s)	315, 504
Bme1390I	CCNGG	3 cut(s)	259, 302, 568
BmeT110I	CYCGRG	1 cut(s)	104
BmrFI	CCNGG	3 cut(s)	259, 302, 568
BmsI	GCATC	1 cut(s)	665
BpiI	GAAGAC	1 cut(s)	144
Bpu10I	CCTNAGC	1 cut(s)	498
Bsa29I	ATCGAT	1 cut(s)	36
BsaHI	GRCGYC	1 cut(s)	674
BsaJI	CCNNGG	4 cut(s)	258, 300, 381, 567
Bse118I	RCCGGY	1 cut(s)	161
Bse21I	CCTNAGG	1 cut(s)	647
Bse3DI	GCAATG	1 cut(s)	438
BseBI	CCWGG	3 cut(s)	259, 302, 568
BseCI	ATCGAT	1 cut(s)	36
BseDI	CCNNGG	4 cut(s)	258, 300, 381, 567
BseGI	GGATG	4 cut(s)	349, 376, 531, 577
BseMI	GCAATG	1 cut(s)	438
BseMII	CTCAG	3 cut(s)	489, 546, 638
BseXI	GCAGC	1 cut(s)	514
Bsh1285I	CGRYCG	1 cut(s)	214
BshFI	GGCC	1 cut(s)	665
BshVI	ATCGAT	1 cut(s)	36
BsiEI	CGRYCG	1 cut(s)	214
BsiHKCI	CYCGRG	1 cut(s)	104
BsiSI	CCGG	1 cut(s)	162
BsnI	GGCC	1 cut(s)	665
BsoBI	CYCGRG	1 cut(s)	104
Bsp1286I	GDGCHC	1 cut(s)	103
Bsp143I	GATC	6 cut(s)	211, 220, 244, 361, 624, 642
Bsp19I	CCATGG	1 cut(s)	381
BspACI	CCGC	2 cut(s)	61, 314
BspANI	GGCC	1 cut(s)	665
BspCNI	CTCAG	3 cut(s)	490, 545, 639
BspDI	ATCGAT	1 cut(s)	36
BspPI	GGATC	3 cut(s)	215, 632, 637
BspTI	CTTAAG	1 cut(s)	473
BsrDI	GCAATG	1 cut(s)	438
BsrFI	RCCGGY	1 cut(s)	161
BssAI	RCCGGY	1 cut(s)	161
BssECI	CCNNGG	4 cut(s)	258, 300, 381, 567
BssMI	GATC	6 cut(s)	211, 220, 244, 361, 624, 642
BssNI	GRCGYC	1 cut(s)	674
BssT1I	CCWWGG	1 cut(s)	381
Bst2UI	CCWGG	3 cut(s)	259, 302, 568
Bst4CI	ACNGT	1 cut(s)	616
BstACI	GRCGYC	1 cut(s)	674
BstAFI	CTTAAG	1 cut(s)	473
BstAPI	GCANNNNNTGC	1 cut(s)	79
BstC8I	GCNNGC	2 cut(s)	17, 75
BstDEI	CTNAG	5 cut(s)	118, 498, 518, 532, 647
BstDSI	CCRYGG	1 cut(s)	381
BstF5I	GGATG	4 cut(s)	349, 376, 531, 577
BstH2I	RGCGCY	1 cut(s)	314
BstHHI	GCGC	3 cut(s)	21, 313, 611
BstKTI	GATC	6 cut(s)	214, 223, 247, 364, 627, 645
BstMBI	GATC	6 cut(s)	211, 220, 244, 361, 624, 642
BstMCI	CGRYCG	1 cut(s)	214
BstMWI	GCNNNNNNNGC	3 cut(s)	79, 662, 671
BstNI	CCWGG	3 cut(s)	259, 302, 568
BstNSI	RCATGY	1 cut(s)	447
BstSCI	CCNGG	3 cut(s)	257, 300, 566
BstV1I	GCAGC	1 cut(s)	514
BstV2I	GAAGAC	1 cut(s)	144
BstX2I	RGATCY	2 cut(s)	220, 624
BstYI	RGATCY	2 cut(s)	220, 624
Bsu15I	ATCGAT	1 cut(s)	36
Bsu36I	CCTNAGG	1 cut(s)	647
BsuRI	GGCC	1 cut(s)	665
BsuTUI	ATCGAT	1 cut(s)	36
BtgI	CCRYGG	1 cut(s)	381
BtsCI	GGATG	4 cut(s)	349, 376, 531, 577
BtsIMutI	CAGTG	1 cut(s)	540
Cac8I	GCNNGC	2 cut(s)	17, 75
CfoI	GCGC	3 cut(s)	21, 313, 611
Cfr10I	RCCGGY	1 cut(s)	161
ClaI	ATCGAT	1 cut(s)	36
CseI	GACGC	2 cut(s)	588, 663
CviAII	CATG	6 cut(s)	382, 444, 451, 603, 678, 683
DdeI	CTNAG	5 cut(s)	118, 498, 518, 532, 647
DpnI	GATC	6 cut(s)	213, 222, 246, 363, 626, 644
DpnII	GATC	6 cut(s)	211, 220, 244, 361, 624, 642
Eco130I	CCWWGG	1 cut(s)	381
Eco147I	AGGCCT	1 cut(s)	665
Eco24I	GRGCYC	1 cut(s)	103
Eco57I	CTGAAG	3 cut(s)	156, 246, 491
Eco81I	CCTNAGG	1 cut(s)	647
Eco88I	CYCGRG	1 cut(s)	104
EcoRII	CCWGG	3 cut(s)	257, 300, 566
EcoT14I	CCWWGG	1 cut(s)	381
EcoT38I	GRGCYC	1 cut(s)	103
ErhI	CCWWGG	1 cut(s)	381
FaeI	CATG	6 cut(s)	385, 447, 454, 606, 681, 686
FalI	AAGNNNNNCTT	2 cut(s)	348, 380
FatI	CATG	6 cut(s)	381, 443, 450, 602, 677, 682
Fnu4HI	GCNGC	2 cut(s)	314, 503
FokI	GGATG	4 cut(s)	356, 383, 538, 584
FriOI	GRGCYC	1 cut(s)	103
Fsp4HI	GCNGC	2 cut(s)	314, 503
GlaI	GCGC	3 cut(s)	20, 312, 610
GluI	GCNGC	2 cut(s)	314, 503
HaeII	RGCGCY	1 cut(s)	314
HaeIII	GGCC	1 cut(s)	665
HapII	CCGG	1 cut(s)	162
HgaI	GACGC	2 cut(s)	588, 663
HhaI	GCGC	3 cut(s)	21, 313, 611
Hin1I	GRCGYC	1 cut(s)	674
Hin1II	CATG	6 cut(s)	385, 447, 454, 606, 681, 686
Hin6I	GCGC	3 cut(s)	19, 311, 609
HinP1I	GCGC	3 cut(s)	19, 311, 609
HindIII	AAGCTT	1 cut(s)	75
HinfI	GANTC	3 cut(s)	33, 293, 493
HpaII	CCGG	1 cut(s)	162
Hpy188I	TCNGA	4 cut(s)	136, 211, 510, 561
Hpy188III	TCNNGA	4 cut(s)	215, 224, 497, 646
HpyCH4III	ACNGT	1 cut(s)	616
HpyCH4IV	ACGT	1 cut(s)	594
HpyCH4V	TGCA	3 cut(s)	73, 443, 656
HpyF10VI	GCNNNNNNNGC	3 cut(s)	79, 662, 671
HpyF3I	CTNAG	5 cut(s)	118, 498, 518, 532, 647
HpySE526I	ACGT	1 cut(s)	594
Hsp92I	GRCGYC	1 cut(s)	674
Hsp92II	CATG	6 cut(s)	385, 447, 454, 606, 681, 686
HspAI	GCGC	3 cut(s)	19, 311, 609
Kzo9I	GATC	6 cut(s)	211, 220, 244, 361, 624, 642
LmnI	GCTCC	1 cut(s)	606
Lsp1109I	GCAGC	1 cut(s)	514
LweI	GCATC	1 cut(s)	665
MaeII	ACGT	1 cut(s)	594
MaeIII	GTNAC	1 cut(s)	177
MalI	GATC	6 cut(s)	213, 222, 246, 363, 626, 644
MboI	GATC	6 cut(s)	211, 220, 244, 361, 624, 642
MflI	RGATCY	2 cut(s)	220, 624
MhlI	GDGCHC	1 cut(s)	103
MluCI	AATT	1 cut(s)	236
MlyI	GAGTC	2 cut(s)	302, 487
MnlI	CCTC	4 cut(s)	113, 160, 427, 642
MseI	TTAA	2 cut(s)	113, 474
MspCI	CTTAAG	1 cut(s)	473
MspI	CCGG	1 cut(s)	162
MspR9I	CCNGG	3 cut(s)	259, 302, 568
MvaI	CCWGG	3 cut(s)	259, 302, 568
MwoI	GCNNNNNNNGC	3 cut(s)	79, 662, 671
NcoI	CCATGG	1 cut(s)	381
NdeII	GATC	6 cut(s)	211, 220, 244, 361, 624, 642
NlaIII	CATG	6 cut(s)	385, 447, 454, 606, 681, 686
NmuCI	GTSAC	1 cut(s)	177
NspI	RCATGY	1 cut(s)	447
PaeR7I	CTCGAG	1 cut(s)	104
PceI	AGGCCT	1 cut(s)	665
PfeI	GAWTC	1 cut(s)	33
PkrI	GCNGC	2 cut(s)	315, 504
Ple19I	CGATCG	1 cut(s)	214
PleI	GAGTC	2 cut(s)	301, 487
PpsI	GAGTC	2 cut(s)	301, 487
Psp6I	CCWGG	3 cut(s)	257, 300, 566
PspGI	CCWGG	3 cut(s)	257, 300, 566
PspXI	VCTCGAGB	1 cut(s)	104
PsuI	RGATCY	2 cut(s)	220, 624
PvuI	CGATCG	1 cut(s)	214
SaqAI	TTAA	2 cut(s)	113, 474
SatI	GCNGC	2 cut(s)	314, 503
Sau3AI	GATC	6 cut(s)	211, 220, 244, 361, 624, 642
SchI	GAGTC	2 cut(s)	302, 487
ScrFI	CCNGG	3 cut(s)	259, 302, 568
SduI	GDGCHC	1 cut(s)	103
SetI	ASST	8 cut(s)	79, 232, 306, 338, 507, 585, 597, 699
SfaNI	GCATC	1 cut(s)	665
Sfr274I	CTCGAG	1 cut(s)	104
SgrAI	CRCCGGYG	1 cut(s)	161
SlaI	CTCGAG	1 cut(s)	104
SmlI	CTYRAG	2 cut(s)	104, 473
SmoI	CTYRAG	2 cut(s)	104, 473
Sse9I	AATT	1 cut(s)	236
SseBI	AGGCCT	1 cut(s)	665
SsiI	CCGC	2 cut(s)	61, 314
SspI	AATATT	1 cut(s)	49
StuI	AGGCCT	1 cut(s)	665
StyD4I	CCNGG	3 cut(s)	257, 300, 566
StyI	CCWWGG	1 cut(s)	381
TaaI	ACNGT	1 cut(s)	616
TaiI	ACGT	1 cut(s)	597
TaqI	TCGA	4 cut(s)	36, 105, 214, 692
TasI	AATT	1 cut(s)	236
TauI	GCSGC	1 cut(s)	316
TfiI	GAWTC	1 cut(s)	33
Tru1I	TTAA	2 cut(s)	113, 474
Tru9I	TTAA	2 cut(s)	113, 474
TscAI	CASTG	1 cut(s)	540
TseFI	GTSAC	1 cut(s)	177
TseI	GCWGC	1 cut(s)	502
Tsp45I	GTSAC	1 cut(s)	177
TspDTI	ATGAA	4 cut(s)	159, 249, 390, 439
TspRI	CASTG	1 cut(s)	540
Vha464I	CTTAAG	1 cut(s)	473
XceI	RCATGY	1 cut(s)	447
XhoI	CTCGAG	1 cut(s)	104

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.