Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0005332

Physical Location & Seq

Genomic Coordinates Forward (+)

57659496 .. 57663112

Gene Structure 3617 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G038000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGGAGGTGGAGGTCCCCGGTTCGAAACCCTCGGCTGCGGCGGCGAGGCTGAGGAGAGGGGATTCCGAGGAGGATCGGCTCAGGGTGAAGAGGAAGACTCTTCAGGCCGTGCTTAACCAATGCCAGAGAGCTCTTGAATCGCTCGGTACCACCTCCGGCGACGGTGTCGATGATGGTGATGACGATGACGATGAAGAAGAAGATAGGGACGGTGCTGGTTCTGGTGGTGACGCCTTTGACGAAGGCGGTGGCTCCACGACGACTTCTCGTGCTGACTGCGAAGCTGATGAGTTGTGCAATCTTCTTAAATCTAGAGTTGAGTGCCCAGACTTCCTGCAAAAGTTGGAATCTGCACAAGCATCAGTTCCACAAAATATTACTGAAGAAGGCAATTCTTGGGATGTAGTCAGTGAGAAAGATCTATGGGAATATGAGGATGACAACTTGGGTGAAGATGAGTATGTCCTTGTTAAGCAAGAAGATATAGTAGAGGGTATTGCGTGCTTTATGGCTGCATACTTGTTGTCCCTTAAAGAGACTAAGGAGTTGACCCCTACTCAACTTCAGGAAGCCCTCAGCAAAACATTTTCAGTGAAAAAGAAGAAAGGAAAGCTTCGAAAGGCATGGGATGGAAGCAAAGTCATCTATAATGTAGCATCATGGGGAGCAACTGCCATTGGGATATATCAGAACCCTGTAATTGTAAGGGCTGCCACAAAAGCCTTCTGGACATCTTGCCAAGTTATATCAAAGCTTCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

253

Amino Acids

27.7

Weight (kDa)

4.51

Isoelectric Point (pI)

39.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005332)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24590 AT4G24590 AT4G24590 AT4G24590 AT4G24590 AT5G49710 AT5G49710 AT5G49710
fragaria_vesca	FvH4_5g35650 FvH4_5g35650 FvH4_5g35650 FvH4_5g35650
malus_domestica	MD08G1195200.v1.1 MD15G1382900.v1.1
prunus_persica	Prupe.1G528700_v2.0.a1 Prupe.1G528700_v2.0.a1 Prupe.1G528700_v2.0.a1
pyrus_communis	pycom15g34270
rosa_chinensis	RchiOBHm_Chr7g0237181
rosa_laevigata	RLG00000001024
rosa_multiflora	Rmu_sc0011019.1_g000011
rosa_roxburghii	Rroxscaffold_3G00224370
rosa_rugosa	Rorug07G0302500 Rorug07G0302600
rosa_samantha	Rh7AG458800 Rh7BG429300 Rh7CG476500 Rh7DG445800
rosa_wichuraiana	Rw7G038000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	146
AccB1I	GGYRCC	1 cut(s)	146
AciI	CCGC	3 cut(s)	38, 41, 246
AclWI	GGATC	1 cut(s)	81
AcuI	CTGAAG	3 cut(s)	86, 402, 548
AcyI	GRCGYC	1 cut(s)	231
AfaI	GTAC	1 cut(s)	148
AgsI	TTSAA	1 cut(s)	137
AluBI	AGCT	4 cut(s)	131, 284, 613, 754
AluI	AGCT	4 cut(s)	131, 284, 613, 754
Alw21I	GWGCWC	1 cut(s)	133
Alw26I	GTCTC	1 cut(s)	530
AlwI	GGATC	1 cut(s)	81
AoxI	GGCC	1 cut(s)	105
ApeKI	GCWGC	3 cut(s)	35, 512, 710
Asp718I	GGTACC	1 cut(s)	146
AspS9I	GGNCC	1 cut(s)	13
AsuC2I	CCSGG	1 cut(s)	18
AsuHPI	GGTGA	4 cut(s)	97, 188, 239, 461
AsuII	TTCGAA	2 cut(s)	23, 616
AvaII	GGWCC	1 cut(s)	13
BaeGI	GKGCMC	1 cut(s)	326
BanI	GGYRCC	1 cut(s)	146
BanII	GRGCYC	1 cut(s)	133
BauI	CACGAG	1 cut(s)	267
BbsI	GAAGAC	1 cut(s)	101
Bbv12I	GWGCWC	1 cut(s)	133
BbvCI	CCTCAGC	2 cut(s)	50, 575
BbvI	GCAGC	3 cut(s)	22, 499, 697
BccI	CCATC	2 cut(s)	167, 623
BceAI	ACGGC	1 cut(s)	92
BcnI	CCSGG	1 cut(s)	18
BcoDI	GTCTC	1 cut(s)	530
BfaI	CTAG	2 cut(s)	312, 760
BglII	AGATCT	1 cut(s)	418
BisI	GCNGC	5 cut(s)	36, 39, 42, 513, 711
BlsI	GCNGC	5 cut(s)	37, 40, 43, 514, 712
Bme1390I	CCNGG	1 cut(s)	18
Bme18I	GGWCC	1 cut(s)	13
BmgT120I	GGNCC	1 cut(s)	13
BmiI	GGNNCC	3 cut(s)	15, 148, 253
BmrFI	CCNGG	1 cut(s)	18
BmsI	GCATC	2 cut(s)	368, 665
BpiI	GAAGAC	1 cut(s)	101
BplI	GAGNNNNNCTC	2 cut(s)	82, 114
Bpu10I	CCTNAGC	3 cut(s)	50, 80, 575
Bpu14I	TTCGAA	2 cut(s)	23, 616
BpuMI	CCSGG	1 cut(s)	18
BsaHI	GRCGYC	1 cut(s)	231
BsaJI	CCNNGG	3 cut(s)	16, 30, 66
BseDI	CCNNGG	3 cut(s)	16, 30, 66
BseGI	GGATG	3 cut(s)	406, 442, 634
BseMII	CTCAG	3 cut(s)	41, 94, 589
BseRI	GAGGAG	2 cut(s)	67, 83
BseSI	GKGCMC	1 cut(s)	326
BseXI	GCAGC	3 cut(s)	22, 499, 697
BsgI	GTGCAG	1 cut(s)	336
BshFI	GGCC	1 cut(s)	107
BshNI	GGYRCC	1 cut(s)	146
BsiHKAI	GWGCWC	1 cut(s)	133
BsiSI	CCGG	2 cut(s)	18, 156
BslFI	GGGAC	2 cut(s)	221, 511
BsmAI	GTCTC	1 cut(s)	530
BsmFI	GGGAC	2 cut(s)	221, 511
BsnI	GGCC	1 cut(s)	107
Bsp119I	TTCGAA	2 cut(s)	23, 616
Bsp1286I	GDGCHC	2 cut(s)	133, 326
Bsp143I	GATC	2 cut(s)	73, 418
BspACI	CCGC	3 cut(s)	38, 41, 246
BspANI	GGCC	1 cut(s)	107
BspCNI	CTCAG	3 cut(s)	42, 93, 588
BspLI	GGNNCC	3 cut(s)	15, 148, 253
BspPI	GGATC	1 cut(s)	81
BspT104I	TTCGAA	2 cut(s)	23, 616
BspT107I	GGYRCC	1 cut(s)	146
BssECI	CCNNGG	3 cut(s)	16, 30, 66
BssMI	GATC	2 cut(s)	73, 418
BssNI	GRCGYC	1 cut(s)	231
BssSI	CACGAG	1 cut(s)	267
Bst2BI	CACGAG	1 cut(s)	267
Bst4CI	ACNGT	2 cut(s)	164, 212
Bst6I	CTCTTC	2 cut(s)	83, 105
BstACI	GRCGYC	1 cut(s)	231
BstBI	TTCGAA	2 cut(s)	23, 616
BstC8I	GCNNGC	1 cut(s)	502
BstDEI	CTNAG	4 cut(s)	50, 80, 540, 575
BstF5I	GGATG	3 cut(s)	406, 442, 634
BstKTI	GATC	2 cut(s)	76, 421
BstMAI	GTCTC	1 cut(s)	530
BstMBI	GATC	2 cut(s)	73, 418
BstMWI	GCNNNNNNNGC	2 cut(s)	41, 719
BstSCI	CCNGG	1 cut(s)	16
BstSLI	GKGCMC	1 cut(s)	326
BstV1I	GCAGC	3 cut(s)	22, 499, 697
BstV2I	GAAGAC	1 cut(s)	101
BstX2I	RGATCY	1 cut(s)	418
BstYI	RGATCY	1 cut(s)	418
BsuRI	GGCC	1 cut(s)	107
BtsCI	GGATG	3 cut(s)	406, 442, 634
BtsIMutI	CAGTG	2 cut(s)	415, 597
Cac8I	GCNNGC	1 cut(s)	502
Cfr13I	GGNCC	1 cut(s)	13
CseI	GACGC	1 cut(s)	239
Csp6I	GTAC	1 cut(s)	147
CviAII	CATG	2 cut(s)	624, 660
CviQI	GTAC	1 cut(s)	147
DdeI	CTNAG	4 cut(s)	50, 80, 540, 575
DpnI	GATC	2 cut(s)	75, 420
DpnII	GATC	2 cut(s)	73, 418
Eam1104I	CTCTTC	2 cut(s)	83, 105
EarI	CTCTTC	2 cut(s)	83, 105
Ecl136II	GAGCTC	1 cut(s)	131
Eco24I	GRGCYC	1 cut(s)	133
Eco47I	GGWCC	1 cut(s)	13
Eco53kI	GAGCTC	1 cut(s)	131
Eco57I	CTGAAG	3 cut(s)	86, 402, 548
EcoICRI	GAGCTC	1 cut(s)	131
EcoO109I	RGGNCCY	1 cut(s)	13
EcoT38I	GRGCYC	1 cut(s)	133
FaeI	CATG	2 cut(s)	627, 663
FalI	AAGNNNNNCTT	2 cut(s)	597, 629
FaqI	GGGAC	2 cut(s)	221, 511
FatI	CATG	2 cut(s)	623, 659
Fnu4HI	GCNGC	5 cut(s)	36, 39, 42, 513, 711
FokI	GGATG	3 cut(s)	413, 449, 641
FriOI	GRGCYC	1 cut(s)	133
Fsp4HI	GCNGC	5 cut(s)	36, 39, 42, 513, 711
FspBI	CTAG	2 cut(s)	312, 760
GluI	GCNGC	5 cut(s)	36, 39, 42, 513, 711
HaeIII	GGCC	1 cut(s)	107
HapII	CCGG	2 cut(s)	18, 156
HgaI	GACGC	1 cut(s)	239
Hin1I	GRCGYC	1 cut(s)	231
Hin1II	CATG	2 cut(s)	627, 663
HincII	GTYRAC	1 cut(s)	549
HindII	GTYRAC	1 cut(s)	549
HindIII	AAGCTT	2 cut(s)	611, 752
HinfI	GANTC	4 cut(s)	62, 97, 137, 347
HpaII	CCGG	2 cut(s)	18, 156
HphI	GGTGA	4 cut(s)	97, 188, 239, 461
Hpy166II	GTNNAC	1 cut(s)	549
Hpy188I	TCNGA	2 cut(s)	67, 690
Hpy188III	TCNNGA	4 cut(s)	134, 312, 566, 727
Hpy8I	GTNNAC	1 cut(s)	549
Hpy99I	CGWCG	2 cut(s)	164, 262
HpyAV	CCTTC	3 cut(s)	236, 380, 733
HpyCH4III	ACNGT	2 cut(s)	164, 212
HpyCH4V	TGCA	4 cut(s)	297, 337, 353, 515
HpyF10VI	GCNNNNNNNGC	2 cut(s)	41, 719
HpyF3I	CTNAG	4 cut(s)	50, 80, 540, 575
Hsp92I	GRCGYC	1 cut(s)	231
Hsp92II	CATG	2 cut(s)	627, 663
KpnI	GGTACC	1 cut(s)	150
Kzo9I	GATC	2 cut(s)	73, 418
LmnI	GCTCC	2 cut(s)	257, 665
Lsp1109I	GCAGC	3 cut(s)	22, 499, 697
LweI	GCATC	2 cut(s)	368, 665
MaeI	CTAG	2 cut(s)	312, 760
MaeIII	GTNAC	1 cut(s)	227
MalI	GATC	2 cut(s)	75, 420
MboI	GATC	2 cut(s)	73, 418
MflI	RGATCY	1 cut(s)	418
MhlI	GDGCHC	2 cut(s)	133, 326
MluCI	AATT	2 cut(s)	391, 699
MlyI	GAGTC	1 cut(s)	91
MmeI	TCCRAC	1 cut(s)	324
MseI	TTAA	4 cut(s)	114, 306, 471, 531
MspI	CCGG	2 cut(s)	18, 156
MspR9I	CCNGG	1 cut(s)	18
MwoI	GCNNNNNNNGC	2 cut(s)	41, 719
NciI	CCSGG	1 cut(s)	18
NdeII	GATC	2 cut(s)	73, 418
NlaIII	CATG	2 cut(s)	627, 663
NlaIV	GGNNCC	3 cut(s)	15, 148, 253
NmeAIII	GCCGAG	1 cut(s)	11
NmuCI	GTSAC	1 cut(s)	227
NspV	TTCGAA	2 cut(s)	23, 616
PcsI	WCGNNNNNNNCGW	1 cut(s)	237
PfeI	GAWTC	3 cut(s)	62, 137, 347
PflFI	GACNNNGTC	1 cut(s)	164
PkrI	GCNGC	5 cut(s)	37, 40, 43, 514, 712
PleI	GAGTC	1 cut(s)	91
PpsI	GAGTC	1 cut(s)	91
PpuMI	RGGWCCY	1 cut(s)	13
Psp124BI	GAGCTC	1 cut(s)	133
Psp5II	RGGWCCY	1 cut(s)	13
PspN4I	GGNNCC	3 cut(s)	15, 148, 253
PspPI	GGNCC	1 cut(s)	13
PspPPI	RGGWCCY	1 cut(s)	13
PsuI	RGATCY	1 cut(s)	418
PsyI	GACNNNGTC	1 cut(s)	164
RsaI	GTAC	1 cut(s)	148
RsaNI	GTAC	1 cut(s)	147
SacI	GAGCTC	1 cut(s)	133
SaqAI	TTAA	4 cut(s)	114, 306, 471, 531
SatI	GCNGC	5 cut(s)	36, 39, 42, 513, 711
Sau3AI	GATC	2 cut(s)	73, 418
Sau96I	GGNCC	1 cut(s)	13
SchI	GAGTC	1 cut(s)	91
ScrFI	CCNGG	1 cut(s)	18
SduI	GDGCHC	2 cut(s)	133, 326
SetI	ASST	7 cut(s)	9, 15, 133, 155, 286, 615, 756
SfaNI	GCATC	2 cut(s)	368, 665
SfuI	TTCGAA	2 cut(s)	23, 616
SinI	GGWCC	1 cut(s)	13
Sse9I	AATT	2 cut(s)	391, 699
SsiI	CCGC	3 cut(s)	38, 41, 246
SspI	AATATT	1 cut(s)	376
SspMI	CTAG	2 cut(s)	312, 760
SstI	GAGCTC	1 cut(s)	133
StyD4I	CCNGG	1 cut(s)	16
TaaI	ACNGT	2 cut(s)	164, 212
TaqI	TCGA	3 cut(s)	23, 168, 616
TasI	AATT	2 cut(s)	391, 699
TauI	GCSGC	2 cut(s)	41, 44
TfiI	GAWTC	3 cut(s)	62, 137, 347
Tru1I	TTAA	4 cut(s)	114, 306, 471, 531
Tru9I	TTAA	4 cut(s)	114, 306, 471, 531
TscAI	CASTG	2 cut(s)	415, 597
TseFI	GTSAC	1 cut(s)	227
TseI	GCWGC	3 cut(s)	35, 512, 710
Tsp45I	GTSAC	1 cut(s)	227
TspDTI	ATGAA	1 cut(s)	207
TspRI	CASTG	2 cut(s)	415, 597
Tth111I	GACNNNGTC	1 cut(s)	164
VpaK11BI	GGWCC	1 cut(s)	13
XbaI	TCTAGA	1 cut(s)	311
XspI	CTAG	2 cut(s)	312, 760

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.