Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0005332

Physical Location & Seq

Genomic Coordinates Reverse (-)

43257554 .. 43261213

Gene Structure 3660 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G528700.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGGAGGTCGAGGTCTCCGGTTCGAATCCCTCGGCCGATGCGAAATTGAGGAGAGCGGAATCGCAGAAGGATAAGCTCCGCGTGAAGCGGAAGACTCTGCAGGCTGTGCTCGAGCAGTGCCAGAGAGCCCTCGTGTCGCTCGATACCACTGGGGGTGCTGACGGCGACAGCGATGGAGATGATAACGGTGAGGATGAAGACGATGATGATGATAACAGTTCTCGTGGTGCTGTCGATGACGATGAGCGCCAGCAAGGCCGCAGATCGACGAGTTCGCGCCCTGACTGCGAAGCCGACGAGTTATGCAATCTTCTAAAATCTAGAGTTGAATGTCCCGACTTCCTTGAAAAGCTACAATGCGCGCAAGCATCATCAGTTCCCCAAAATATGGCTGCAGAAGAAGGTAGTTCTTGGGATCTGGTTAATGAGAATGATCTATGGGAAGATGAGGATAGCGACTTGGGTGAAGAAGACTATGTTCTTGTTAGGCAAGAAGATATAGTAGAGGGTATTGCATGCTTTATGGCTGCATACCTGTTATCCCTTAAACAGACTAAGGAATTGACCCCTAATCAACTTCAGGATGCACTTAGCAAAACATTCTCCGTGAGAAAGAAGAAGGGAAAACTTCGAAAGGCTTGGGATGGAAGCAAAGTCATTTATAATGTAGCATCATGGGGGGCAACCGCCATCGGGATATACCAAAACCCTGTAATAGTAAGGGCTGCCACGAAAGCCTTCTGGACATCTTGTCAAGTTATATCAAAACTTCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

259

Amino Acids

28.53

Weight (kDa)

4.52

Isoelectric Point (pI)

42.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005332)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24590 AT4G24590 AT4G24590 AT4G24590 AT4G24590 AT5G49710 AT5G49710 AT5G49710
fragaria_vesca	FvH4_5g35650 FvH4_5g35650 FvH4_5g35650 FvH4_5g35650
malus_domestica	MD08G1195200.v1.1 MD15G1382900.v1.1
prunus_persica	Prupe.1G528700_v2.0.a1 Prupe.1G528700_v2.0.a1 Prupe.1G528700_v2.0.a1
pyrus_communis	pycom15g34270
rosa_chinensis	RchiOBHm_Chr7g0237181
rosa_laevigata	RLG00000001024
rosa_multiflora	Rmu_sc0011019.1_g000011
rosa_roxburghii	Rroxscaffold_3G00224370
rosa_rugosa	Rorug07G0302500 Rorug07G0302600
rosa_samantha	Rh7AG458800 Rh7BG429300 Rh7CG476500 Rh7DG445800
rosa_wichuraiana	Rw7G038000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	663
AccB7I	CCANNNNNTGG	1 cut(s)	388
AccBSI	CCGCTC	1 cut(s)	56
AccII	CGCG	3 cut(s)	81, 277, 362
AciI	CCGC	5 cut(s)	56, 79, 88, 259, 687
AclWI	GGATC	1 cut(s)	423
AcoI	YGGCCR	1 cut(s)	33
AcuI	CTGAAG	1 cut(s)	563
AfiI	CCNNNNNNNGG	2 cut(s)	388, 693
AgsI	TTSAA	2 cut(s)	329, 347
AhdI	GACNNNNNGTC	1 cut(s)	750
AluBI	AGCT	2 cut(s)	76, 352
AluI	AGCT	2 cut(s)	76, 352
Alw21I	GWGCWC	1 cut(s)	111
Alw26I	GTCTC	1 cut(s)	19
AlwI	GGATC	1 cut(s)	423
Ama87I	CYCGRG	1 cut(s)	110
AoxI	GGCC	2 cut(s)	33, 256
ApeKI	GCWGC	3 cut(s)	392, 527, 725
Asp700I	GAANNNNTTC	1 cut(s)	737
AspLEI	GCGC	4 cut(s)	249, 279, 362, 364
AsuHPI	GGTGA	2 cut(s)	200, 476
AsuII	TTCGAA	2 cut(s)	23, 631
AvaI	CYCGRG	1 cut(s)	110
BanII	GRGCYC	1 cut(s)	130
BauI	CACGAG	2 cut(s)	131, 222
BbsI	GAAGAC	3 cut(s)	98, 204, 477
Bbv12I	GWGCWC	1 cut(s)	111
BbvI	GCAGC	3 cut(s)	379, 514, 712
BccI	CCATC	3 cut(s)	167, 638, 698
BceAI	ACGGC	1 cut(s)	178
BcoDI	GTCTC	1 cut(s)	19
BfaI	CTAG	1 cut(s)	321
BfmI	CTRYAG	2 cut(s)	98, 393
BfoI	RGCGCY	1 cut(s)	250
BglI	GCCNNNNNGGC	1 cut(s)	255
BisI	GCNGC	4 cut(s)	259, 393, 528, 726
BlsI	GCNGC	4 cut(s)	260, 394, 529, 727
BmeRI	GACNNNNNGTC	1 cut(s)	750
BmeT110I	CYCGRG	1 cut(s)	110
BmrI	ACTGGG	1 cut(s)	159
BmsI	GCATC	4 cut(s)	28, 377, 574, 680
BmuI	ACTGGG	1 cut(s)	159
BpiI	GAAGAC	3 cut(s)	98, 204, 477
Bpu14I	TTCGAA	2 cut(s)	23, 631
BsaI	GGTCTC	1 cut(s)	19
BsaJI	CCNNGG	1 cut(s)	30
BsaWI	WCCGGW	1 cut(s)	17
Bsc4I	CCNNNNNNNGG	2 cut(s)	388, 693
Bse1I	ACTGG	1 cut(s)	154
BseDI	CCNNGG	1 cut(s)	30
BseGI	GGATG	3 cut(s)	199, 589, 649
BseLI	CCNNNNNNNGG	2 cut(s)	388, 693
BseNI	ACTGG	1 cut(s)	154
BsePI	GCGCGC	1 cut(s)	360
BseRI	GAGGAG	1 cut(s)	64
BseX3I	CGGCCG	1 cut(s)	33
BseXI	GCAGC	3 cut(s)	379, 514, 712
Bsh1236I	CGCG	3 cut(s)	81, 277, 362
Bsh1285I	CGRYCG	1 cut(s)	36
BshFI	GGCC	2 cut(s)	35, 258
BsiEI	CGRYCG	1 cut(s)	36
BsiHKAI	GWGCWC	1 cut(s)	111
BsiHKCI	CYCGRG	1 cut(s)	110
BsiSI	CCGG	1 cut(s)	18
BslFI	GGGAC	1 cut(s)	318
BslI	CCNNNNNNNGG	2 cut(s)	388, 693
BsmAI	GTCTC	1 cut(s)	19
BsmFI	GGGAC	1 cut(s)	318
BsnI	GGCC	2 cut(s)	35, 258
Bso31I	GGTCTC	1 cut(s)	19
BsoBI	CYCGRG	1 cut(s)	110
Bsp119I	TTCGAA	2 cut(s)	23, 631
Bsp1286I	GDGCHC	2 cut(s)	111, 130
Bsp143I	GATC	3 cut(s)	263, 415, 433
BspACI	CCGC	5 cut(s)	56, 79, 88, 259, 687
BspANI	GGCC	2 cut(s)	35, 258
BspFNI	CGCG	3 cut(s)	81, 277, 362
BspMAI	CTGCAG	2 cut(s)	102, 397
BspPI	GGATC	1 cut(s)	423
BspT104I	TTCGAA	2 cut(s)	23, 631
BspTNI	GGTCTC	1 cut(s)	19
BsrBI	CCGCTC	1 cut(s)	56
BsrI	ACTGG	1 cut(s)	154
BssECI	CCNNGG	1 cut(s)	30
BssHII	GCGCGC	1 cut(s)	360
BssMI	GATC	3 cut(s)	263, 415, 433
BssSI	CACGAG	2 cut(s)	131, 222
Bst2BI	CACGAG	2 cut(s)	131, 222
Bst4CI	ACNGT	2 cut(s)	188, 218
BstAPI	GCANNNNNTGC	1 cut(s)	106
BstBI	TTCGAA	2 cut(s)	23, 631
BstC8I	GCNNGC	5 cut(s)	102, 251, 362, 366, 517
BstDEI	CTNAG	2 cut(s)	555, 590
BstF5I	GGATG	3 cut(s)	199, 589, 649
BstFNI	CGCG	3 cut(s)	81, 277, 362
BstH2I	RGCGCY	1 cut(s)	250
BstHHI	GCGC	4 cut(s)	249, 279, 362, 364
BstKTI	GATC	3 cut(s)	266, 418, 436
BstMAI	GTCTC	1 cut(s)	19
BstMBI	GATC	3 cut(s)	263, 415, 433
BstMCI	CGRYCG	1 cut(s)	36
BstMWI	GCNNNNNNNGC	4 cut(s)	106, 255, 285, 734
BstNSI	RCATGY	1 cut(s)	519
BstSFI	CTRYAG	2 cut(s)	98, 393
BstUI	CGCG	3 cut(s)	81, 277, 362
BstV1I	GCAGC	3 cut(s)	379, 514, 712
BstV2I	GAAGAC	3 cut(s)	98, 204, 477
BstX2I	RGATCY	1 cut(s)	415
BstYI	RGATCY	1 cut(s)	415
BstZI	CGGCCG	1 cut(s)	33
BsuRI	GGCC	2 cut(s)	35, 258
BtgZI	GCGATG	1 cut(s)	186
BtsCI	GGATG	3 cut(s)	199, 589, 649
BtsI	GCAGTG	1 cut(s)	122
BtsIMutI	CAGTG	2 cut(s)	122, 147
Cac8I	GCNNGC	5 cut(s)	102, 251, 362, 366, 517
CfoI	GCGC	4 cut(s)	249, 279, 362, 364
CviAII	CATG	2 cut(s)	516, 675
DdeI	CTNAG	2 cut(s)	555, 590
DpnI	GATC	3 cut(s)	265, 417, 435
DpnII	GATC	3 cut(s)	263, 415, 433
DriI	GACNNNNNGTC	1 cut(s)	750
EaeI	YGGCCR	1 cut(s)	33
EagI	CGGCCG	1 cut(s)	33
Eam1105I	GACNNNNNGTC	1 cut(s)	750
EclXI	CGGCCG	1 cut(s)	33
Eco24I	GRGCYC	1 cut(s)	130
Eco31I	GGTCTC	1 cut(s)	19
Eco52I	CGGCCG	1 cut(s)	33
Eco57I	CTGAAG	1 cut(s)	563
Eco88I	CYCGRG	1 cut(s)	110
EcoT38I	GRGCYC	1 cut(s)	130
FaeI	CATG	2 cut(s)	519, 678
FaqI	GGGAC	1 cut(s)	318
FatI	CATG	2 cut(s)	515, 674
Fnu4HI	GCNGC	4 cut(s)	259, 393, 528, 726
FokI	GGATG	3 cut(s)	206, 596, 656
FriOI	GRGCYC	1 cut(s)	130
Fsp4HI	GCNGC	4 cut(s)	259, 393, 528, 726
FspBI	CTAG	1 cut(s)	321
GlaI	GCGC	4 cut(s)	248, 278, 361, 363
GluI	GCNGC	4 cut(s)	259, 393, 528, 726
HaeII	RGCGCY	1 cut(s)	250
HaeIII	GGCC	2 cut(s)	35, 258
HapII	CCGG	1 cut(s)	18
HhaI	GCGC	4 cut(s)	249, 279, 362, 364
Hin1II	CATG	2 cut(s)	519, 678
Hin6I	GCGC	4 cut(s)	247, 277, 360, 362
HinP1I	GCGC	4 cut(s)	247, 277, 360, 362
HinfI	GANTC	3 cut(s)	25, 59, 94
HpaII	CCGG	1 cut(s)	18
HphI	GGTGA	2 cut(s)	200, 476
Hpy188III	TCNNGA	5 cut(s)	321, 335, 581, 694, 742
Hpy99I	CGWCG	2 cut(s)	271, 299
HpyAV	CCTTC	4 cut(s)	61, 395, 613, 748
HpyCH4III	ACNGT	2 cut(s)	188, 218
HpyCH4V	TGCA	6 cut(s)	100, 306, 395, 515, 530, 587
HpyF10VI	GCNNNNNNNGC	4 cut(s)	106, 255, 285, 734
HpyF3I	CTNAG	2 cut(s)	555, 590
Hsp92II	CATG	2 cut(s)	519, 678
HspAI	GCGC	4 cut(s)	247, 277, 360, 362
Kzo9I	GATC	3 cut(s)	263, 415, 433
LmnI	GCTCC	1 cut(s)	81
Lsp1109I	GCAGC	3 cut(s)	379, 514, 712
LweI	GCATC	4 cut(s)	28, 377, 574, 680
MaeI	CTAG	1 cut(s)	321
MalI	GATC	3 cut(s)	265, 417, 435
MbiI	CCGCTC	1 cut(s)	56
MboI	GATC	3 cut(s)	263, 415, 433
MboII	GAAGA	9 cut(s)	103, 209, 302, 410, 455, 479, 482, 506, 628
MflI	RGATCY	1 cut(s)	415
MhlI	GDGCHC	2 cut(s)	111, 130
MluCI	AATT	2 cut(s)	44, 560
MlyI	GAGTC	1 cut(s)	88
MnlI	CCTC	7 cut(s)	4, 40, 42, 140, 184, 442, 499
MroXI	GAANNNNTTC	1 cut(s)	737
MseI	TTAA	2 cut(s)	423, 546
MspI	CCGG	1 cut(s)	18
MvnI	CGCG	3 cut(s)	81, 277, 362
MwoI	GCNNNNNNNGC	4 cut(s)	106, 255, 285, 734
NdeII	GATC	3 cut(s)	263, 415, 433
NlaIII	CATG	2 cut(s)	519, 678
NmeAIII	GCCGAG	1 cut(s)	11
NspI	RCATGY	1 cut(s)	519
NspV	TTCGAA	2 cut(s)	23, 631
PaeI	GCATGC	1 cut(s)	519
PaeR7I	CTCGAG	1 cut(s)	110
PauI	GCGCGC	1 cut(s)	360
PcsI	WCGNNNNNNNCGW	3 cut(s)	38, 138, 168
PdmI	GAANNNNTTC	1 cut(s)	737
PfeI	GAWTC	2 cut(s)	25, 59
PflMI	CCANNNNNTGG	1 cut(s)	388
PkrI	GCNGC	4 cut(s)	260, 394, 529, 727
PleI	GAGTC	1 cut(s)	88
PpsI	GAGTC	1 cut(s)	88
PsiI	TTATAA	1 cut(s)	663
PspXI	VCTCGAGB	1 cut(s)	110
PstI	CTGCAG	2 cut(s)	102, 397
PsuI	RGATCY	1 cut(s)	415
PteI	GCGCGC	1 cut(s)	360
SaqAI	TTAA	2 cut(s)	423, 546
SatI	GCNGC	4 cut(s)	259, 393, 528, 726
Sau3AI	GATC	3 cut(s)	263, 415, 433
SchI	GAGTC	1 cut(s)	88
SduI	GDGCHC	2 cut(s)	111, 130
SetI	ASST	6 cut(s)	9, 15, 78, 354, 406, 537
SfaNI	GCATC	4 cut(s)	28, 377, 574, 680
SfcI	CTRYAG	2 cut(s)	98, 393
Sfr274I	CTCGAG	1 cut(s)	110
SfuI	TTCGAA	2 cut(s)	23, 631
SlaI	CTCGAG	1 cut(s)	110
SmlI	CTYRAG	1 cut(s)	110
SmoI	CTYRAG	1 cut(s)	110
SphI	GCATGC	1 cut(s)	519
Sse9I	AATT	2 cut(s)	44, 560
SsiI	CCGC	5 cut(s)	56, 79, 88, 259, 687
SspMI	CTAG	1 cut(s)	321
TaaI	ACNGT	2 cut(s)	188, 218
TaqI	TCGA	7 cut(s)	9, 23, 111, 141, 234, 266, 631
TasI	AATT	2 cut(s)	44, 560
TauI	GCSGC	1 cut(s)	261
TfiI	GAWTC	2 cut(s)	25, 59
Tru1I	TTAA	2 cut(s)	423, 546
Tru9I	TTAA	2 cut(s)	423, 546
TscAI	CASTG	2 cut(s)	122, 154
TseI	GCWGC	3 cut(s)	392, 527, 725
TspDTI	ATGAA	1 cut(s)	210
TspGWI	ACGGA	1 cut(s)	595
TspRI	CASTG	2 cut(s)	122, 154
Van91I	CCANNNNNTGG	1 cut(s)	388
XbaI	TCTAGA	1 cut(s)	320
XceI	RCATGY	1 cut(s)	519
XhoI	CTCGAG	1 cut(s)	110
XmnI	GAANNNNTTC	1 cut(s)	737
XspI	CTAG	1 cut(s)	321

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.