Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0005332

Physical Location & Seq

Genomic Coordinates Reverse (-)

25176800 .. 25180276

Gene Structure 3477 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1195200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGGAGGTCGAGGTCGAGGTCTCCGGCACGAAGCCGTCGGCCGACGCGAAATTGAGGAGAGTGGATTCGCAGCACAAGGATCAGCTCCGCGTGAAGAGGAAGACTCTGCAGGCGGTGCTCGAGCAGTGCCAGAGAGCGCTCGAGTCGCTCGGTACAACTGGGGGTGCTGACGAGGAGGACGATGGGGATGATGACGAAGATGAAGACGATAACAGTTCTCGTGGTGCCGCCGTTGACGACGACCGCCGACAGGGAAGGGGATCGACGAGTTCGCTGGCTGACTGCGAAGCCGACGAGTTATGCAACCTTCTTAAATCTAGAGTTGAATGCCCTGACTTCCTTCAAAAGCTTCAAAGTGCACAAGCATCAGTTCCGCAAAATATACCTGAAGAAGGTAATTCGTGGGATCTGGTTAGTGAGAATGATCTATGGGAAGATGAGGATAGCAAATTTGGTGAAGAAGACTACGTTCTTGTTAGGCAAGAAGATATAGTAGAGGGTATTGCATGCTTTATGGCTGCATACCTGTTGTCCCTTAAACAGACTAAGGAATTGACCCCTAATCAACTTCAGGAAGCCCTTAGCAAAACATTCTCAGTGAAAAAGAAGAAGGGAAAGCTTCGTAAAGCGTGGGACGGAAGTAAAGTTATTTATAACGTAGCATCGTGGGGGGCAACTGCAATTGGGATATACCAAAACCCTGTAATCATAAGGGTTGCCACAAAAGCCTTCTGGACATCTTGCCAAGTTCTATCAAAGTTTCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

256

Amino Acids

28.37

Weight (kDa)

4.65

Isoelectric Point (pI)

46.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005332)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24590 AT4G24590 AT4G24590 AT4G24590 AT4G24590 AT5G49710 AT5G49710 AT5G49710
fragaria_vesca	FvH4_5g35650 FvH4_5g35650 FvH4_5g35650 FvH4_5g35650
malus_domestica	MD08G1195200.v1.1 MD15G1382900.v1.1
prunus_persica	Prupe.1G528700_v2.0.a1 Prupe.1G528700_v2.0.a1 Prupe.1G528700_v2.0.a1
pyrus_communis	pycom15g34270
rosa_chinensis	RchiOBHm_Chr7g0237181
rosa_laevigata	RLG00000001024
rosa_multiflora	Rmu_sc0011019.1_g000011
rosa_roxburghii	Rroxscaffold_3G00224370
rosa_rugosa	Rorug07G0302500 Rorug07G0302600
rosa_samantha	Rh7AG458800 Rh7BG429300 Rh7CG476500 Rh7DG445800
rosa_wichuraiana	Rw7G038000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	654
AccB1I	GGYRCC	1 cut(s)	224
AccII	CGCG	2 cut(s)	47, 90
AciI	CCGC	5 cut(s)	88, 113, 228, 244, 374
AclWI	GGATC	3 cut(s)	87, 268, 414
AcoI	YGGCCR	1 cut(s)	39
AcsI	RAATTY	1 cut(s)	449
AcuI	CTGAAG	2 cut(s)	408, 554
AfaI	GTAC	1 cut(s)	154
AfeI	AGCGCT	1 cut(s)	138
AfiI	CCNNNNNNNGG	2 cut(s)	250, 392
AgsI	TTSAA	3 cut(s)	326, 344, 353
AluBI	AGCT	3 cut(s)	85, 349, 619
AluI	AGCT	3 cut(s)	85, 349, 619
Alw21I	GWGCWC	2 cut(s)	120, 361
Alw26I	GTCTC	1 cut(s)	25
Alw44I	GTGCAC	1 cut(s)	357
AlwI	GGATC	3 cut(s)	87, 268, 414
Ama87I	CYCGRG	2 cut(s)	119, 140
Aor51HI	AGCGCT	1 cut(s)	138
AoxI	GGCC	1 cut(s)	39
ApaLI	GTGCAC	1 cut(s)	357
ApeKI	GCWGC	2 cut(s)	70, 518
ApoI	RAATTY	1 cut(s)	449
AspLEI	GCGC	1 cut(s)	139
AsuHPI	GGTGA	1 cut(s)	467
AvaI	CYCGRG	2 cut(s)	119, 140
BaeGI	GKGCMC	1 cut(s)	361
BanI	GGYRCC	1 cut(s)	224
BauI	CACGAG	1 cut(s)	219
BbsI	GAAGAC	3 cut(s)	107, 210, 468
Bbv12I	GWGCWC	2 cut(s)	120, 361
BbvI	GCAGC	2 cut(s)	82, 505
BccI	CCATC	1 cut(s)	176
BceAI	ACGGC	2 cut(s)	19, 215
BcoDI	GTCTC	1 cut(s)	25
BfaI	CTAG	1 cut(s)	318
BfmI	CTRYAG	1 cut(s)	107
BfoI	RGCGCY	1 cut(s)	140
BisI	GCNGC	3 cut(s)	71, 228, 519
BlsI	GCNGC	3 cut(s)	72, 229, 520
BmeT110I	CYCGRG	2 cut(s)	119, 140
BmiI	GGNNCC	1 cut(s)	226
BmrI	ACTGGG	1 cut(s)	168
BmsI	GCATC	2 cut(s)	374, 671
BmuI	ACTGGG	1 cut(s)	168
BpiI	GAAGAC	3 cut(s)	107, 210, 468
BplI	GAGNNNNNCTC	2 cut(s)	88, 120
Bpu10I	CCTNAGC	1 cut(s)	581
BsaI	GGTCTC	1 cut(s)	25
Bsc4I	CCNNNNNNNGG	2 cut(s)	250, 392
Bse1I	ACTGG	1 cut(s)	163
BseGI	GGATG	1 cut(s)	193
BseLI	CCNNNNNNNGG	2 cut(s)	250, 392
BseMII	CTCAG	1 cut(s)	609
BseNI	ACTGG	1 cut(s)	163
BseRI	GAGGAG	2 cut(s)	70, 188
BseSI	GKGCMC	1 cut(s)	361
BseX3I	CGGCCG	1 cut(s)	39
BseXI	GCAGC	2 cut(s)	82, 505
Bsh1236I	CGCG	2 cut(s)	47, 90
Bsh1285I	CGRYCG	2 cut(s)	42, 244
BshFI	GGCC	1 cut(s)	41
BshNI	GGYRCC	1 cut(s)	224
BsiEI	CGRYCG	2 cut(s)	42, 244
BsiHKAI	GWGCWC	2 cut(s)	120, 361
BsiHKCI	CYCGRG	2 cut(s)	119, 140
BsiSI	CCGG	1 cut(s)	24
BslFI	GGGAC	2 cut(s)	517, 647
BslI	CCNNNNNNNGG	2 cut(s)	250, 392
BsmAI	GTCTC	1 cut(s)	25
BsmFI	GGGAC	2 cut(s)	517, 647
BsmI	GAATGC	1 cut(s)	332
BsnI	GGCC	1 cut(s)	41
Bso31I	GGTCTC	1 cut(s)	25
BsoBI	CYCGRG	2 cut(s)	119, 140
Bsp1286I	GDGCHC	2 cut(s)	120, 361
Bsp143I	GATC	4 cut(s)	79, 260, 406, 424
BspACI	CCGC	5 cut(s)	88, 113, 228, 244, 374
BspANI	GGCC	1 cut(s)	41
BspCNI	CTCAG	1 cut(s)	608
BspFNI	CGCG	2 cut(s)	47, 90
BspLI	GGNNCC	1 cut(s)	226
BspMAI	CTGCAG	1 cut(s)	111
BspPI	GGATC	3 cut(s)	87, 268, 414
BspT107I	GGYRCC	1 cut(s)	224
BspTNI	GGTCTC	1 cut(s)	25
BsrI	ACTGG	1 cut(s)	163
BssMI	GATC	4 cut(s)	79, 260, 406, 424
BssSI	CACGAG	1 cut(s)	219
Bst2BI	CACGAG	1 cut(s)	219
Bst4CI	ACNGT	1 cut(s)	215
Bst6I	CTCTTC	1 cut(s)	89
BstAPI	GCANNNNNTGC	1 cut(s)	115
BstC8I	GCNNGC	3 cut(s)	111, 276, 508
BstDEI	CTNAG	3 cut(s)	546, 581, 595
BstENI	CCTNNNNNAGG	1 cut(s)	390
BstF5I	GGATG	1 cut(s)	193
BstFNI	CGCG	2 cut(s)	47, 90
BstH2I	RGCGCY	1 cut(s)	140
BstHHI	GCGC	1 cut(s)	139
BstKTI	GATC	4 cut(s)	82, 263, 409, 427
BstMAI	GTCTC	1 cut(s)	25
BstMBI	GATC	4 cut(s)	79, 260, 406, 424
BstMCI	CGRYCG	2 cut(s)	42, 244
BstMWI	GCNNNNNNNGC	3 cut(s)	115, 145, 725
BstNSI	RCATGY	1 cut(s)	510
BstSFI	CTRYAG	1 cut(s)	107
BstSLI	GKGCMC	1 cut(s)	361
BstUI	CGCG	2 cut(s)	47, 90
BstV1I	GCAGC	2 cut(s)	82, 505
BstV2I	GAAGAC	3 cut(s)	107, 210, 468
BstX2I	RGATCY	1 cut(s)	406
BstYI	RGATCY	1 cut(s)	406
BstZI	CGGCCG	1 cut(s)	39
BsuRI	GGCC	1 cut(s)	41
BtsCI	GGATG	1 cut(s)	193
BtsI	GCAGTG	1 cut(s)	131
BtsIMutI	CAGTG	2 cut(s)	131, 603
Cac8I	GCNNGC	3 cut(s)	111, 276, 508
CfoI	GCGC	1 cut(s)	139
CseI	GACGC	1 cut(s)	53
Csp6I	GTAC	1 cut(s)	153
CviAII	CATG	1 cut(s)	507
CviQI	GTAC	1 cut(s)	153
DdeI	CTNAG	3 cut(s)	546, 581, 595
DpnI	GATC	4 cut(s)	81, 262, 408, 426
DpnII	GATC	4 cut(s)	79, 260, 406, 424
EaeI	YGGCCR	1 cut(s)	39
EagI	CGGCCG	1 cut(s)	39
Eam1104I	CTCTTC	1 cut(s)	89
EarI	CTCTTC	1 cut(s)	89
EclXI	CGGCCG	1 cut(s)	39
Eco31I	GGTCTC	1 cut(s)	25
Eco47III	AGCGCT	1 cut(s)	138
Eco52I	CGGCCG	1 cut(s)	39
Eco57I	CTGAAG	2 cut(s)	408, 554
Eco88I	CYCGRG	2 cut(s)	119, 140
EcoNI	CCTNNNNNAGG	1 cut(s)	390
FaeI	CATG	1 cut(s)	510
FaqI	GGGAC	2 cut(s)	517, 647
FatI	CATG	1 cut(s)	506
Fnu4HI	GCNGC	3 cut(s)	71, 228, 519
FokI	GGATG	1 cut(s)	200
Fsp4HI	GCNGC	3 cut(s)	71, 228, 519
FspBI	CTAG	1 cut(s)	318
GlaI	GCGC	1 cut(s)	138
GluI	GCNGC	3 cut(s)	71, 228, 519
HaeII	RGCGCY	1 cut(s)	140
HaeIII	GGCC	1 cut(s)	41
HapII	CCGG	1 cut(s)	24
HgaI	GACGC	1 cut(s)	53
HhaI	GCGC	1 cut(s)	139
Hin1II	CATG	1 cut(s)	510
Hin6I	GCGC	1 cut(s)	137
HinP1I	GCGC	1 cut(s)	137
HincII	GTYRAC	1 cut(s)	235
HindII	GTYRAC	1 cut(s)	235
HindIII	AAGCTT	2 cut(s)	347, 617
HinfI	GANTC	3 cut(s)	65, 103, 143
HpaII	CCGG	1 cut(s)	24
HphI	GGTGA	1 cut(s)	467
Hpy166II	GTNNAC	2 cut(s)	235, 359
Hpy188III	TCNNGA	3 cut(s)	318, 572, 733
Hpy8I	GTNNAC	2 cut(s)	235, 359
Hpy99I	CGWCG	5 cut(s)	40, 47, 242, 268, 296
HpyAV	CCTTC	6 cut(s)	249, 317, 350, 386, 604, 739
HpyCH4III	ACNGT	1 cut(s)	215
HpyCH4IV	ACGT	2 cut(s)	468, 657
HpyCH4V	TGCA	6 cut(s)	109, 303, 359, 506, 521, 680
HpyF10VI	GCNNNNNNNGC	3 cut(s)	115, 145, 725
HpyF3I	CTNAG	3 cut(s)	546, 581, 595
HpySE526I	ACGT	2 cut(s)	468, 657
Hsp92II	CATG	1 cut(s)	510
HspAI	GCGC	1 cut(s)	137
Kzo9I	GATC	4 cut(s)	79, 260, 406, 424
LmnI	GCTCC	1 cut(s)	90
Lsp1109I	GCAGC	2 cut(s)	82, 505
LweI	GCATC	2 cut(s)	374, 671
MaeI	CTAG	1 cut(s)	318
MaeII	ACGT	2 cut(s)	468, 657
MalI	GATC	4 cut(s)	81, 262, 408, 426
MboI	GATC	4 cut(s)	79, 260, 406, 424
MfeI	CAATTG	1 cut(s)	681
MflI	RGATCY	1 cut(s)	406
MhlI	GDGCHC	2 cut(s)	120, 361
MluCI	AATT	5 cut(s)	50, 397, 449, 551, 681
MlyI	GAGTC	2 cut(s)	97, 152
MnlI	CCTC	8 cut(s)	4, 10, 48, 90, 166, 169, 433, 490
MseI	TTAA	2 cut(s)	312, 537
MspI	CCGG	1 cut(s)	24
MunI	CAATTG	1 cut(s)	681
Mva1269I	GAATGC	1 cut(s)	332
MvnI	CGCG	2 cut(s)	47, 90
MwoI	GCNNNNNNNGC	3 cut(s)	115, 145, 725
NdeII	GATC	4 cut(s)	79, 260, 406, 424
NlaIII	CATG	1 cut(s)	510
NlaIV	GGNNCC	1 cut(s)	226
NspI	RCATGY	1 cut(s)	510
PaeI	GCATGC	1 cut(s)	510
PaeR7I	CTCGAG	2 cut(s)	119, 140
PcsI	WCGNNNNNNNCGW	2 cut(s)	44, 177
PctI	GAATGC	1 cut(s)	332
PfeI	GAWTC	1 cut(s)	65
PkrI	GCNGC	3 cut(s)	72, 229, 520
PleI	GAGTC	2 cut(s)	97, 151
PpsI	GAGTC	2 cut(s)	97, 151
PsiI	TTATAA	1 cut(s)	654
PspN4I	GGNNCC	1 cut(s)	226
PspXI	VCTCGAGB	2 cut(s)	119, 140
PstI	CTGCAG	1 cut(s)	111
PsuI	RGATCY	1 cut(s)	406
RsaI	GTAC	1 cut(s)	154
RsaNI	GTAC	1 cut(s)	153
SaqAI	TTAA	2 cut(s)	312, 537
SatI	GCNGC	3 cut(s)	71, 228, 519
Sau3AI	GATC	4 cut(s)	79, 260, 406, 424
SchI	GAGTC	2 cut(s)	97, 152
SduI	GDGCHC	2 cut(s)	120, 361
SfaNI	GCATC	2 cut(s)	374, 671
SfcI	CTRYAG	1 cut(s)	107
Sfr274I	CTCGAG	2 cut(s)	119, 140
SlaI	CTCGAG	2 cut(s)	119, 140
SmlI	CTYRAG	2 cut(s)	119, 140
SmoI	CTYRAG	2 cut(s)	119, 140
SphI	GCATGC	1 cut(s)	510
Sse9I	AATT	5 cut(s)	50, 397, 449, 551, 681
SsiI	CCGC	5 cut(s)	88, 113, 228, 244, 374
SspMI	CTAG	1 cut(s)	318
TaaI	ACNGT	1 cut(s)	215
TaiI	ACGT	2 cut(s)	471, 660
TaqI	TCGA	5 cut(s)	9, 15, 120, 141, 263
TasI	AATT	5 cut(s)	50, 397, 449, 551, 681
TauI	GCSGC	1 cut(s)	230
TfiI	GAWTC	1 cut(s)	65
Tru1I	TTAA	2 cut(s)	312, 537
Tru9I	TTAA	2 cut(s)	312, 537
TscAI	CASTG	2 cut(s)	131, 603
TseI	GCWGC	2 cut(s)	70, 518
TspDTI	ATGAA	1 cut(s)	216
TspGWI	ACGGA	1 cut(s)	651
TspRI	CASTG	2 cut(s)	131, 603
VneI	GTGCAC	1 cut(s)	357
XagI	CCTNNNNNAGG	1 cut(s)	390
XapI	RAATTY	1 cut(s)	449
XbaI	TCTAGA	1 cut(s)	317
XceI	RCATGY	1 cut(s)	510
XhoI	CTCGAG	2 cut(s)	119, 140
XspI	CTAG	1 cut(s)	318

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.