AT4G24990

May serve as docking site to facilitate the association of other proteins to the plasma membrane

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0009060
Physical Location & Seq
Reverse (-)
12849651 .. 12851810
2160 bp
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UTR
Exon/CDS
Intron
AT4G24990.1

Sequence Viewer

Length: 357 bp
ATGCCGGAGGAAGAATCGATAGATATCAAATTCAGGTTGTACGATGGCTCCGATATCGGGCCTTTTCGGTATTCTGCGGCTTCTACTGTTGACTTTTTGAAGCAGAGGGTCGTCTCTGATTGGCCCAAAGGCAAAACAGTTGTTCCAAAGGGGATAAACGAAGTGAAGCTGATAAGCTCGGGTAAGATCTTGGAGAACAACAAGACTGTTGGGCAGTGTAAGACACCATTTGGAGATATTGCTGGTGGAGTCATTGTGATGCATGTTGTTGTACAGCCTTCTCTAGCTAAATCCAAAACAGAGAAGAAGGTTGATAAAGCACCAAAGGCAGTAATCTGCACATGCACCATTTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rad60-SLD_2

Protein Analysis

118

Amino Acids

12.84

Weight (kDa)

9.17

Isoelectric Point (pI)

41.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rad60-SLD_2 PF13881 5 - 116 1.7e-43 Ubiquitin-2 like Rad60 SUMO-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 77
AcsI RAATTY 1 cut(s) 29
AfaI GTAC 2 cut(s) 41, 273
AfiI CCNNNNNNNGG 1 cut(s) 57
AgsI TTSAA 1 cut(s) 100
AluBI AGCT 3 cut(s) 169, 177, 287
AluI AGCT 3 cut(s) 169, 177, 287
Alw26I GTCTC 1 cut(s) 118
Ama87I CYCGRG 1 cut(s) 178
AoxI GGCC 2 cut(s) 59, 122
ApoI RAATTY 1 cut(s) 29
AspS9I GGNCC 2 cut(s) 59, 123
AvaI CYCGRG 1 cut(s) 178
BccI CCATC 1 cut(s) 38
BcoDI GTCTC 1 cut(s) 118
BfaI CTAG 1 cut(s) 284
BglII AGATCT 1 cut(s) 186
BisI GCNGC 1 cut(s) 78
BlsI GCNGC 1 cut(s) 79
BmeT110I CYCGRG 1 cut(s) 178
BmgT120I GGNCC 2 cut(s) 59, 123
BmiI GGNNCC 1 cut(s) 49
BmsI GCATC 1 cut(s) 249
Bsa29I ATCGAT 1 cut(s) 17
BsaBI GATNNNNATC 1 cut(s) 23
BsaXI ACNNNNNCTCC 4 cut(s) 32, 62, 240, 270
Bsc4I CCNNNNNNNGG 1 cut(s) 57
Bse8I GATNNNNATC 1 cut(s) 23
BseCI ATCGAT 1 cut(s) 17
BseJI GATNNNNATC 1 cut(s) 23
BseLI CCNNNNNNNGG 1 cut(s) 57
BsgI GTGCAG 1 cut(s) 322
BshFI GGCC 2 cut(s) 61, 124
BshVI ATCGAT 1 cut(s) 17
BsiHKCI CYCGRG 1 cut(s) 178
BsiSI CCGG 1 cut(s) 5
BslI CCNNNNNNNGG 1 cut(s) 57
BsmAI GTCTC 1 cut(s) 118
BsmBI CGTCTC 1 cut(s) 118
BsnI GGCC 2 cut(s) 61, 124
BsoBI CYCGRG 1 cut(s) 178
Bsp1407I TGTACA 1 cut(s) 271
Bsp143I GATC 1 cut(s) 186
BspACI CCGC 1 cut(s) 77
BspANI GGCC 2 cut(s) 61, 124
BspDI ATCGAT 1 cut(s) 17
BspLI GGNNCC 1 cut(s) 49
BsrGI TGTACA 1 cut(s) 271
BssMI GATC 1 cut(s) 186
Bst4CI ACNGT 3 cut(s) 88, 139, 208
BstAUI TGTACA 1 cut(s) 271
BstKTI GATC 1 cut(s) 189
BstMAI GTCTC 1 cut(s) 118
BstMBI GATC 1 cut(s) 186
BstMWI GCNNNNNNNGC 1 cut(s) 326
BstNSI RCATGY 2 cut(s) 266, 345
BstX2I RGATCY 1 cut(s) 186
BstYI RGATCY 1 cut(s) 186
Bsu15I ATCGAT 1 cut(s) 17
BsuRI GGCC 2 cut(s) 61, 124
BsuTUI ATCGAT 1 cut(s) 17
BtsI GCAGTG 1 cut(s) 221
BtsIMutI CAGTG 1 cut(s) 221
Cfr13I GGNCC 2 cut(s) 59, 123
ClaI ATCGAT 1 cut(s) 17
Csp6I GTAC 2 cut(s) 40, 272
CviAII CATG 2 cut(s) 263, 342
CviJI RGCY 8 cut(s) 48, 61, 80, 124, 169, 177, 277, 287
CviKI_1 RGCY 8 cut(s) 48, 61, 80, 124, 169, 177, 277, 287
CviQI GTAC 2 cut(s) 40, 272
DpnI GATC 1 cut(s) 188
DpnII GATC 1 cut(s) 186
Eco32I GATATC 2 cut(s) 25, 55
Eco88I CYCGRG 1 cut(s) 178
EcoRV GATATC 2 cut(s) 25, 55
EcoT22I ATGCAT 1 cut(s) 264
Esp3I CGTCTC 1 cut(s) 118
FaeI CATG 2 cut(s) 266, 345
FaiI YATR 2 cut(s) 264, 343
FatI CATG 2 cut(s) 262, 341
Fnu4HI GCNGC 1 cut(s) 78
Fsp4HI GCNGC 1 cut(s) 78
FspBI CTAG 1 cut(s) 284
GluI GCNGC 1 cut(s) 78
HaeIII GGCC 2 cut(s) 61, 124
HapII CCGG 1 cut(s) 5
Hin1II CATG 2 cut(s) 266, 345
HincII GTYRAC 1 cut(s) 91
HindII GTYRAC 1 cut(s) 91
HinfI GANTC 2 cut(s) 14, 249
HpaII CCGG 1 cut(s) 5
Hpy166II GTNNAC 1 cut(s) 91
Hpy188I TCNGA 2 cut(s) 52, 118
Hpy8I GTNNAC 1 cut(s) 91
HpyAV CCTTC 2 cut(s) 288, 301
HpyCH4III ACNGT 3 cut(s) 88, 139, 208
HpyCH4V TGCA 3 cut(s) 262, 339, 345
HpyF10VI GCNNNNNNNGC 1 cut(s) 326
Hsp92II CATG 2 cut(s) 266, 345
Kzo9I GATC 1 cut(s) 186
LmnI GCTCC 1 cut(s) 53
LpnPI CCDG 3 cut(s) 18, 19, 228
LweI GCATC 1 cut(s) 249
MaeI CTAG 1 cut(s) 284
MalI GATC 1 cut(s) 188
MboI GATC 1 cut(s) 186
MboII GAAGA 2 cut(s) 23, 316
MflI RGATCY 1 cut(s) 186
MluCI AATT 1 cut(s) 29
MlyI GAGTC 1 cut(s) 258
MnlI CCTC 1 cut(s) 99
Mph1103I ATGCAT 1 cut(s) 264
MslI CAYNNNNRTG 1 cut(s) 257
MspI CCGG 1 cut(s) 5
MwoI GCNNNNNNNGC 1 cut(s) 326
NdeII GATC 1 cut(s) 186
NlaIII CATG 2 cut(s) 266, 345
NlaIV GGNNCC 1 cut(s) 49
NsiI ATGCAT 1 cut(s) 264
NspI RCATGY 2 cut(s) 266, 345
PcsI WCGNNNNNNNCGW 1 cut(s) 48
PfeI GAWTC 1 cut(s) 14
PkrI GCNGC 1 cut(s) 79
PleI GAGTC 1 cut(s) 257
PpsI GAGTC 1 cut(s) 257
PspN4I GGNNCC 1 cut(s) 49
PspPI GGNCC 2 cut(s) 59, 123
PsuI RGATCY 1 cut(s) 186
RsaI GTAC 2 cut(s) 41, 273
RsaNI GTAC 2 cut(s) 40, 272
RseI CAYNNNNRTG 1 cut(s) 257
SatI GCNGC 1 cut(s) 78
Sau3AI GATC 1 cut(s) 186
Sau96I GGNCC 2 cut(s) 59, 123
SchI GAGTC 1 cut(s) 258
SetI ASST 5 cut(s) 38, 171, 179, 289, 312
SfaNI GCATC 1 cut(s) 249
SmiMI CAYNNNNRTG 1 cut(s) 257
Sse9I AATT 1 cut(s) 29
SsiI CCGC 1 cut(s) 77
SspMI CTAG 1 cut(s) 284
TaaI ACNGT 3 cut(s) 88, 139, 208
TaqI TCGA 1 cut(s) 17
TasI AATT 1 cut(s) 29
TatI WGTACW 1 cut(s) 271
TauI GCSGC 1 cut(s) 80
TfiI GAWTC 1 cut(s) 14
TscAI CASTG 1 cut(s) 221
TspRI CASTG 1 cut(s) 221
XapI RAATTY 1 cut(s) 29
XceI RCATGY 2 cut(s) 266, 345
XspI CTAG 1 cut(s) 284
Zsp2I ATGCAT 1 cut(s) 264
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.