Rroxscaffold_3G00265500

May serve as docking site to facilitate the association of other proteins to the plasma membrane

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0009060
Physical Location & Seq
Reverse (-)
58900278 .. 58902325
2048 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00265500.1

Sequence Viewer

Length: 459 bp
ATGCCGGAGGAGGATTTGGTGGACATAAAGTTCAGGCTGTACGATGGCTCCGATATAGGGCCGTTCAGCTACTCATCAGCCTCCACAGTCGATATGCTTAAGCAGAGGGTCGTCTCCGATTGGCCCAAAGGGAAAACGATGATACCCAAGACGGCGAATGAAGTGAAGCTAATGTGTTTTGGTAAAATTTTGGAGAACAACAAGACAGTGGGTCAGTGTAAATTACCTTTTGGTGATGTTGGTGGTGGGGGAGTTATGGTAATGCATGTTGTTGTACAGCCAACTATAGACAAAGCTAAATCAGACAAGAAGATTGATGACTTGCCCGGAAAGTTGTCTGTTCGTGTTCCATATTGTGAAAAAAAGAAACTGTTCGAGTTGGGATTTGGTGACCTCGGGTATCAATGCTCTGACGACATAAACCATCTATCGACATACATTTGTTCATTGTTATTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rad60-SLD_2

Protein Analysis

152

Amino Acids

16.86

Weight (kDa)

6.71

Isoelectric Point (pI)

25.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rad60-SLD_2 PF13881 5 - 105 4.3e-37 Ubiquitin-2 like Rad60 SUMO-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 186
AfaI GTAC 2 cut(s) 41, 276
AfiI CCNNNNNNNGG 1 cut(s) 57
AflII CTTAAG 1 cut(s) 98
AhdI GACNNNNNGTC 1 cut(s) 210
AloI GAACNNNNNNTCC 2 cut(s) 14, 46
AluBI AGCT 3 cut(s) 69, 169, 296
AluI AGCT 3 cut(s) 69, 169, 296
Alw26I GTCTC 1 cut(s) 118
Ama87I CYCGRG 1 cut(s) 395
AoxI GGCC 2 cut(s) 59, 122
ApoI RAATTY 1 cut(s) 186
Asp700I GAANNNNTTC 1 cut(s) 371
AspS9I GGNCC 2 cut(s) 59, 123
AsuC2I CCSGG 1 cut(s) 327
AsuHPI GGTGA 2 cut(s) 245, 401
AvaI CYCGRG 1 cut(s) 395
BccI CCATC 2 cut(s) 38, 432
BceAI ACGGC 2 cut(s) 46, 168
BcnI CCSGG 1 cut(s) 327
BcoDI GTCTC 1 cut(s) 118
BfmI CTRYAG 1 cut(s) 285
BfrI CTTAAG 1 cut(s) 98
Bme1390I CCNGG 1 cut(s) 327
BmeRI GACNNNNNGTC 1 cut(s) 210
BmeT110I CYCGRG 1 cut(s) 395
BmgT120I GGNCC 2 cut(s) 59, 123
BmiI GGNNCC 1 cut(s) 49
BmrFI CCNGG 1 cut(s) 327
BpuMI CCSGG 1 cut(s) 327
BsaJI CCNNGG 1 cut(s) 394
BsaXI ACNNNNNCTCC 4 cut(s) 32, 62, 243, 273
Bsc4I CCNNNNNNNGG 1 cut(s) 57
BseDI CCNNGG 1 cut(s) 394
BseLI CCNNNNNNNGG 1 cut(s) 57
BseRI GAGGAG 1 cut(s) 23
BshFI GGCC 2 cut(s) 61, 124
BsiHKCI CYCGRG 1 cut(s) 395
BsiSI CCGG 2 cut(s) 5, 327
BslI CCNNNNNNNGG 1 cut(s) 57
BsmAI GTCTC 1 cut(s) 118
BsmBI CGTCTC 1 cut(s) 118
BsnI GGCC 2 cut(s) 61, 124
BsoBI CYCGRG 1 cut(s) 395
Bsp1407I TGTACA 1 cut(s) 274
BspANI GGCC 2 cut(s) 61, 124
BspLI GGNNCC 1 cut(s) 49
BspTI CTTAAG 1 cut(s) 98
BsrGI TGTACA 1 cut(s) 274
BssECI CCNNGG 1 cut(s) 394
Bst4CI ACNGT 3 cut(s) 88, 208, 372
BstAFI CTTAAG 1 cut(s) 98
BstAUI TGTACA 1 cut(s) 274
BstEII GGTNACC 1 cut(s) 389
BstMAI GTCTC 1 cut(s) 118
BstNSI RCATGY 1 cut(s) 269
BstPI GGTNACC 1 cut(s) 389
BstSCI CCNGG 1 cut(s) 325
BstSFI CTRYAG 1 cut(s) 285
BsuRI GGCC 2 cut(s) 61, 124
BtsIMutI CAGTG 2 cut(s) 213, 221
Cfr13I GGNCC 2 cut(s) 59, 123
Csp6I GTAC 2 cut(s) 40, 275
CviAII CATG 1 cut(s) 266
CviJI RGCY 9 cut(s) 37, 48, 61, 69, 80, 124, 169, 280, 296
CviKI_1 RGCY 9 cut(s) 37, 48, 61, 69, 80, 124, 169, 280, 296
CviQI GTAC 2 cut(s) 40, 275
DriI GACNNNNNGTC 1 cut(s) 210
Eam1105I GACNNNNNGTC 1 cut(s) 210
Eco88I CYCGRG 1 cut(s) 395
Eco91I GGTNACC 1 cut(s) 389
EcoO65I GGTNACC 1 cut(s) 389
EcoT22I ATGCAT 1 cut(s) 267
Esp3I CGTCTC 1 cut(s) 118
FaeI CATG 1 cut(s) 269
FaiI YATR 9 cut(s) 26, 56, 95, 257, 267, 287, 352, 419, 436
FatI CATG 1 cut(s) 265
HaeIII GGCC 2 cut(s) 61, 124
HapII CCGG 2 cut(s) 5, 327
Hin1II CATG 1 cut(s) 269
HpaII CCGG 2 cut(s) 5, 327
HphI GGTGA 2 cut(s) 245, 401
Hpy166II GTNNAC 1 cut(s) 22
Hpy188I TCNGA 4 cut(s) 52, 118, 304, 412
Hpy8I GTNNAC 1 cut(s) 22
HpyCH4III ACNGT 3 cut(s) 88, 208, 372
HpyCH4V TGCA 1 cut(s) 265
Hsp92II CATG 1 cut(s) 269
LmnI GCTCC 1 cut(s) 53
LpnPI CCDG 3 cut(s) 18, 19, 340
MaeIII GTNAC 1 cut(s) 389
MboII GAAGA 1 cut(s) 322
MluCI AATT 2 cut(s) 186, 221
MnlI CCTC 4 cut(s) 4, 91, 99, 404
Mph1103I ATGCAT 1 cut(s) 267
MroXI GAANNNNTTC 1 cut(s) 371
MseI TTAA 1 cut(s) 99
MspCI CTTAAG 1 cut(s) 98
MspI CCGG 2 cut(s) 5, 327
MspR9I CCNGG 1 cut(s) 327
NciI CCSGG 1 cut(s) 327
NlaIII CATG 1 cut(s) 269
NlaIV GGNNCC 1 cut(s) 49
NmuCI GTSAC 1 cut(s) 389
NsiI ATGCAT 1 cut(s) 267
NspI RCATGY 1 cut(s) 269
PcsI WCGNNNNNNNCGW 1 cut(s) 48
PdmI GAANNNNTTC 1 cut(s) 371
PspEI GGTNACC 1 cut(s) 389
PspN4I GGNNCC 1 cut(s) 49
PspPI GGNCC 2 cut(s) 59, 123
RsaI GTAC 2 cut(s) 41, 276
RsaNI GTAC 2 cut(s) 40, 275
SaqAI TTAA 1 cut(s) 99
Sau96I GGNCC 2 cut(s) 59, 123
ScrFI CCNGG 1 cut(s) 327
SetI ASST 5 cut(s) 71, 171, 229, 298, 396
SfcI CTRYAG 1 cut(s) 285
SmlI CTYRAG 1 cut(s) 98
SmoI CTYRAG 1 cut(s) 98
Sse9I AATT 2 cut(s) 186, 221
StyD4I CCNGG 1 cut(s) 325
TaaI ACNGT 3 cut(s) 88, 208, 372
TaqI TCGA 3 cut(s) 90, 375, 431
TasI AATT 2 cut(s) 186, 221
TatI WGTACW 1 cut(s) 274
Tru1I TTAA 1 cut(s) 99
Tru9I TTAA 1 cut(s) 99
TscAI CASTG 2 cut(s) 213, 221
TseFI GTSAC 1 cut(s) 389
Tsp45I GTSAC 1 cut(s) 389
TspDTI ATGAA 2 cut(s) 174, 435
TspRI CASTG 2 cut(s) 213, 221
Vha464I CTTAAG 1 cut(s) 98
XapI RAATTY 1 cut(s) 186
XceI RCATGY 1 cut(s) 269
XmnI GAANNNNTTC 1 cut(s) 371
Zsp2I ATGCAT 1 cut(s) 267
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.