FvH4_5g08960

May serve as docking site to facilitate the association of other proteins to the plasma membrane

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0009060
Physical Location & Seq
Reverse (-)
5174453 .. 5176165
1713 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g08960.t1

Sequence Viewer

Length: 360 bp
ATGCCGGAGGAGGATTTGGTGGACATAAAGTTCAGGCTGTATGATGGGTCCGATATTGGGCCGTTCAGCTACTCATCGGCGTCTACAGTCGATGTGCTTAAGCAGAGGGTCGTCTCTGATTGGCCCAAAGGCAAAACGATGACACCCAAGACGGCGAATGAAGTGAAGCTAATGTGTTTTGGTAAGATTTTGGAGAACAGCAAGACAGTGGGTCAGTGTAAATTACCTTTTGGTGATGTTGGCGGTGGGGGAGTTATGGTAATGCATGTTGTTGTACAGCCAACTATAGATAAAGCAAAATCAGACAAGAAGATCGATGATTTGCCACGGAAAGTTGTCTGTTCATGTTCCATATTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rad60-SLD_2

Protein Analysis

120

Amino Acids

13.0

Weight (kDa)

8.33

Isoelectric Point (pI)

32.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rad60-SLD_2 PF13881 5 - 117 5.6e-39 Ubiquitin-2 like Rad60 SUMO-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 83
AciI CCGC 1 cut(s) 243
AcyI GRCGYC 1 cut(s) 80
AfaI GTAC 1 cut(s) 276
AfiI CCNNNNNNNGG 1 cut(s) 57
AflII CTTAAG 1 cut(s) 98
AhdI GACNNNNNGTC 1 cut(s) 210
AloI GAACNNNNNNTCC 2 cut(s) 14, 46
AluBI AGCT 2 cut(s) 69, 169
AluI AGCT 2 cut(s) 69, 169
Alw26I GTCTC 1 cut(s) 118
AoxI GGCC 2 cut(s) 59, 122
AspS9I GGNCC 3 cut(s) 48, 59, 123
AsuHPI GGTGA 1 cut(s) 245
AvaII GGWCC 1 cut(s) 48
BccI CCATC 1 cut(s) 38
BceAI ACGGC 2 cut(s) 46, 168
BcoDI GTCTC 1 cut(s) 118
BfmI CTRYAG 2 cut(s) 84, 285
BfrI CTTAAG 1 cut(s) 98
Bme18I GGWCC 1 cut(s) 48
BmeRI GACNNNNNGTC 1 cut(s) 210
BmgT120I GGNCC 3 cut(s) 48, 59, 123
BmiI GGNNCC 1 cut(s) 49
Bsa29I ATCGAT 1 cut(s) 315
BsaHI GRCGYC 1 cut(s) 80
BsaJI CCNNGG 1 cut(s) 326
BsaXI ACNNNNNCTCC 2 cut(s) 243, 273
Bsc4I CCNNNNNNNGG 1 cut(s) 57
BseCI ATCGAT 1 cut(s) 315
BseDI CCNNGG 1 cut(s) 326
BseLI CCNNNNNNNGG 1 cut(s) 57
BseRI GAGGAG 1 cut(s) 23
BshFI GGCC 2 cut(s) 61, 124
BshVI ATCGAT 1 cut(s) 315
BsiSI CCGG 1 cut(s) 5
BslI CCNNNNNNNGG 1 cut(s) 57
BsmAI GTCTC 1 cut(s) 118
BsmBI CGTCTC 1 cut(s) 118
BsnI GGCC 2 cut(s) 61, 124
Bsp1407I TGTACA 1 cut(s) 274
Bsp143I GATC 1 cut(s) 312
BspACI CCGC 1 cut(s) 243
BspANI GGCC 2 cut(s) 61, 124
BspDI ATCGAT 1 cut(s) 315
BspLI GGNNCC 1 cut(s) 49
BspTI CTTAAG 1 cut(s) 98
BsrGI TGTACA 1 cut(s) 274
BssECI CCNNGG 1 cut(s) 326
BssMI GATC 1 cut(s) 312
BssNI GRCGYC 1 cut(s) 80
Bst4CI ACNGT 2 cut(s) 88, 208
BstACI GRCGYC 1 cut(s) 80
BstAFI CTTAAG 1 cut(s) 98
BstAUI TGTACA 1 cut(s) 274
BstDSI CCRYGG 1 cut(s) 326
BstKTI GATC 1 cut(s) 315
BstMAI GTCTC 1 cut(s) 118
BstMBI GATC 1 cut(s) 312
BstNSI RCATGY 1 cut(s) 269
BstSFI CTRYAG 2 cut(s) 84, 285
Bsu15I ATCGAT 1 cut(s) 315
BsuRI GGCC 2 cut(s) 61, 124
BsuTUI ATCGAT 1 cut(s) 315
BtgI CCRYGG 1 cut(s) 326
BtsIMutI CAGTG 2 cut(s) 213, 221
Cfr13I GGNCC 3 cut(s) 48, 59, 123
ClaI ATCGAT 1 cut(s) 315
CseI GACGC 1 cut(s) 69
Csp6I GTAC 1 cut(s) 275
CviAII CATG 2 cut(s) 266, 345
CviJI RGCY 6 cut(s) 37, 61, 69, 124, 169, 280
CviKI_1 RGCY 6 cut(s) 37, 61, 69, 124, 169, 280
CviQI GTAC 1 cut(s) 275
DpnI GATC 1 cut(s) 314
DpnII GATC 1 cut(s) 312
DriI GACNNNNNGTC 1 cut(s) 210
Eam1105I GACNNNNNGTC 1 cut(s) 210
Eco47I GGWCC 1 cut(s) 48
EcoT22I ATGCAT 1 cut(s) 267
Esp3I CGTCTC 1 cut(s) 118
FaeI CATG 2 cut(s) 269, 348
FaiI YATR 7 cut(s) 26, 42, 257, 267, 287, 346, 353
FatI CATG 2 cut(s) 265, 344
FblI GTMKAC 1 cut(s) 83
HaeIII GGCC 2 cut(s) 61, 124
HapII CCGG 1 cut(s) 5
HgaI GACGC 1 cut(s) 69
Hin1I GRCGYC 1 cut(s) 80
Hin1II CATG 2 cut(s) 269, 348
HpaII CCGG 1 cut(s) 5
HphI GGTGA 1 cut(s) 245
Hpy166II GTNNAC 2 cut(s) 22, 84
Hpy188I TCNGA 3 cut(s) 52, 118, 304
Hpy8I GTNNAC 2 cut(s) 22, 84
HpyCH4III ACNGT 2 cut(s) 88, 208
HpyCH4V TGCA 1 cut(s) 265
Hsp92I GRCGYC 1 cut(s) 80
Hsp92II CATG 2 cut(s) 269, 348
Kzo9I GATC 1 cut(s) 312
LpnPI CCDG 2 cut(s) 18, 19
MalI GATC 1 cut(s) 314
MboI GATC 1 cut(s) 312
MboII GAAGA 1 cut(s) 322
MluCI AATT 1 cut(s) 221
MnlI CCTC 2 cut(s) 4, 99
Mph1103I ATGCAT 1 cut(s) 267
MseI TTAA 1 cut(s) 99
MspCI CTTAAG 1 cut(s) 98
MspI CCGG 1 cut(s) 5
NdeII GATC 1 cut(s) 312
NlaIII CATG 2 cut(s) 269, 348
NlaIV GGNNCC 1 cut(s) 49
NsiI ATGCAT 1 cut(s) 267
NspI RCATGY 1 cut(s) 269
PspN4I GGNNCC 1 cut(s) 49
PspPI GGNCC 3 cut(s) 48, 59, 123
RsaI GTAC 1 cut(s) 276
RsaNI GTAC 1 cut(s) 275
SaqAI TTAA 1 cut(s) 99
Sau3AI GATC 1 cut(s) 312
Sau96I GGNCC 3 cut(s) 48, 59, 123
SetI ASST 3 cut(s) 71, 171, 229
SfcI CTRYAG 2 cut(s) 84, 285
SgeI CNNG 7 cut(s) 17, 46, 160, 214, 278, 319, 339
SinI GGWCC 1 cut(s) 48
SmlI CTYRAG 1 cut(s) 98
SmoI CTYRAG 1 cut(s) 98
Sse9I AATT 1 cut(s) 221
SsiI CCGC 1 cut(s) 243
TaaI ACNGT 2 cut(s) 88, 208
TaqI TCGA 2 cut(s) 90, 315
TasI AATT 1 cut(s) 221
TatI WGTACW 1 cut(s) 274
Tru1I TTAA 1 cut(s) 99
Tru9I TTAA 1 cut(s) 99
TscAI CASTG 2 cut(s) 213, 221
TspDTI ATGAA 2 cut(s) 174, 333
TspGWI ACGGA 1 cut(s) 343
TspRI CASTG 2 cut(s) 213, 221
Vha464I CTTAAG 1 cut(s) 98
VpaK11BI GGWCC 1 cut(s) 48
XceI RCATGY 1 cut(s) 269
XmiI GTMKAC 1 cut(s) 83
Zsp2I ATGCAT 1 cut(s) 267
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.