RchiOBHm_Chr7g0189411

May serve as docking site to facilitate the association of other proteins to the plasma membrane

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0009060
Physical Location & Seq
Forward (+)
8721989 .. 8723984
1996 bp
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UTR
Exon/CDS
Intron
PRQ16915

Sequence Viewer

Length: 360 bp
ATGCCGGAGGAGGATTTGGTGGACATAAAGTTCAGGCTGTACGATGGCTCCGATATAGGGCCGTTCAGCTACTCATCAGCCTCCACAGTCGATATGCTTAAGCAGAGGGTCGTCTCCGACTGGCCCAAAGGGAAAACGATGATACCCAAGACGTCGAATGAAGTGAAGCTAATGTGTTTTGGTAAAATTTTGGAGAACAACAAGACAGTGGGTCAGTGTAAATTACCTTTTGGTGATGTTGGTGGTGGGGGAGTTATGGTAATGCATGTTGTTGTACAGCCAACTATAGACAAAGCTAAATCAGACAAGAAGATTGATGACTTGCCCCGGAAAGTTGTCTGTTCGTGTTCCATATTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rad60-SLD_2

Protein Analysis

119

Amino Acids

13.08

Weight (kDa)

8.33

Isoelectric Point (pI)

34.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rad60-SLD_2 PF13881 5 - 117 4e-39 Ubiquitin-2 like Rad60 SUMO-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 155
AcsI RAATTY 1 cut(s) 186
AcyI GRCGYC 1 cut(s) 152
AfaI GTAC 2 cut(s) 41, 276
AfiI CCNNNNNNNGG 1 cut(s) 57
AflII CTTAAG 1 cut(s) 98
AhdI GACNNNNNGTC 1 cut(s) 210
AloI GAACNNNNNNTCC 2 cut(s) 14, 46
AluBI AGCT 3 cut(s) 69, 169, 296
AluI AGCT 3 cut(s) 69, 169, 296
Alw26I GTCTC 1 cut(s) 118
AoxI GGCC 2 cut(s) 59, 122
ApoI RAATTY 1 cut(s) 186
AspS9I GGNCC 2 cut(s) 59, 123
AsuC2I CCSGG 1 cut(s) 328
AsuHPI GGTGA 1 cut(s) 245
BccI CCATC 1 cut(s) 38
BceAI ACGGC 1 cut(s) 46
BcnI CCSGG 1 cut(s) 328
BcoDI GTCTC 1 cut(s) 118
BfmI CTRYAG 1 cut(s) 285
BfrI CTTAAG 1 cut(s) 98
Bme1390I CCNGG 1 cut(s) 328
BmeRI GACNNNNNGTC 1 cut(s) 210
BmgT120I GGNCC 2 cut(s) 59, 123
BmiI GGNNCC 1 cut(s) 49
BmrFI CCNGG 1 cut(s) 328
BpuMI CCSGG 1 cut(s) 328
BsaHI GRCGYC 1 cut(s) 152
BsaJI CCNNGG 1 cut(s) 326
BsaXI ACNNNNNCTCC 4 cut(s) 32, 62, 243, 273
Bsc4I CCNNNNNNNGG 1 cut(s) 57
Bse1I ACTGG 1 cut(s) 125
BseDI CCNNGG 1 cut(s) 326
BseLI CCNNNNNNNGG 1 cut(s) 57
BseNI ACTGG 1 cut(s) 125
BseRI GAGGAG 1 cut(s) 23
BshFI GGCC 2 cut(s) 61, 124
BsiSI CCGG 2 cut(s) 5, 328
BslI CCNNNNNNNGG 1 cut(s) 57
BsmAI GTCTC 1 cut(s) 118
BsmBI CGTCTC 1 cut(s) 118
BsnI GGCC 2 cut(s) 61, 124
Bsp1407I TGTACA 1 cut(s) 274
BspANI GGCC 2 cut(s) 61, 124
BspLI GGNNCC 1 cut(s) 49
BspTI CTTAAG 1 cut(s) 98
BsrGI TGTACA 1 cut(s) 274
BsrI ACTGG 1 cut(s) 125
BssECI CCNNGG 1 cut(s) 326
BssNI GRCGYC 1 cut(s) 152
Bst4CI ACNGT 2 cut(s) 88, 208
BstACI GRCGYC 1 cut(s) 152
BstAFI CTTAAG 1 cut(s) 98
BstAUI TGTACA 1 cut(s) 274
BstMAI GTCTC 1 cut(s) 118
BstNSI RCATGY 1 cut(s) 269
BstSCI CCNGG 1 cut(s) 326
BstSFI CTRYAG 1 cut(s) 285
BsuRI GGCC 2 cut(s) 61, 124
BtsIMutI CAGTG 2 cut(s) 213, 221
Cfr13I GGNCC 2 cut(s) 59, 123
Csp6I GTAC 2 cut(s) 40, 275
CviAII CATG 1 cut(s) 266
CviJI RGCY 9 cut(s) 37, 48, 61, 69, 80, 124, 169, 280, 296
CviKI_1 RGCY 9 cut(s) 37, 48, 61, 69, 80, 124, 169, 280, 296
CviQI GTAC 2 cut(s) 40, 275
DriI GACNNNNNGTC 1 cut(s) 210
Eam1105I GACNNNNNGTC 1 cut(s) 210
EcoT22I ATGCAT 1 cut(s) 267
Esp3I CGTCTC 1 cut(s) 118
FaeI CATG 1 cut(s) 269
FaiI YATR 7 cut(s) 26, 56, 95, 257, 267, 287, 353
FatI CATG 1 cut(s) 265
HaeIII GGCC 2 cut(s) 61, 124
HapII CCGG 2 cut(s) 5, 328
Hin1I GRCGYC 1 cut(s) 152
Hin1II CATG 1 cut(s) 269
HpaII CCGG 2 cut(s) 5, 328
HphI GGTGA 1 cut(s) 245
Hpy166II GTNNAC 1 cut(s) 22
Hpy188I TCNGA 3 cut(s) 52, 118, 304
Hpy8I GTNNAC 1 cut(s) 22
Hpy99I CGWCG 1 cut(s) 157
HpyCH4III ACNGT 2 cut(s) 88, 208
HpyCH4IV ACGT 1 cut(s) 152
HpyCH4V TGCA 1 cut(s) 265
HpySE526I ACGT 1 cut(s) 152
Hsp92I GRCGYC 1 cut(s) 152
Hsp92II CATG 1 cut(s) 269
LmnI GCTCC 1 cut(s) 53
LpnPI CCDG 4 cut(s) 18, 19, 106, 341
MaeII ACGT 1 cut(s) 152
MboII GAAGA 1 cut(s) 322
MluCI AATT 2 cut(s) 186, 221
MmeI TCCRAC 1 cut(s) 141
MnlI CCTC 3 cut(s) 4, 91, 99
Mph1103I ATGCAT 1 cut(s) 267
MseI TTAA 1 cut(s) 99
MspCI CTTAAG 1 cut(s) 98
MspI CCGG 2 cut(s) 5, 328
MspR9I CCNGG 1 cut(s) 328
NciI CCSGG 1 cut(s) 328
NlaIII CATG 1 cut(s) 269
NlaIV GGNNCC 1 cut(s) 49
NsiI ATGCAT 1 cut(s) 267
NspI RCATGY 1 cut(s) 269
PcsI WCGNNNNNNNCGW 1 cut(s) 48
PspN4I GGNNCC 1 cut(s) 49
PspPI GGNCC 2 cut(s) 59, 123
RsaI GTAC 2 cut(s) 41, 276
RsaNI GTAC 2 cut(s) 40, 275
SaqAI TTAA 1 cut(s) 99
Sau96I GGNCC 2 cut(s) 59, 123
ScrFI CCNGG 1 cut(s) 328
SetI ASST 5 cut(s) 71, 155, 171, 229, 298
SfcI CTRYAG 1 cut(s) 285
SmlI CTYRAG 1 cut(s) 98
SmoI CTYRAG 1 cut(s) 98
Sse9I AATT 2 cut(s) 186, 221
StyD4I CCNGG 1 cut(s) 326
TaaI ACNGT 2 cut(s) 88, 208
TaiI ACGT 1 cut(s) 155
TaqI TCGA 2 cut(s) 90, 155
TasI AATT 2 cut(s) 186, 221
TatI WGTACW 1 cut(s) 274
Tru1I TTAA 1 cut(s) 99
Tru9I TTAA 1 cut(s) 99
TscAI CASTG 2 cut(s) 213, 221
TspDTI ATGAA 1 cut(s) 174
TspRI CASTG 2 cut(s) 213, 221
Vha464I CTTAAG 1 cut(s) 98
XapI RAATTY 1 cut(s) 186
XceI RCATGY 1 cut(s) 269
ZraI GACGTC 1 cut(s) 153
Zsp2I ATGCAT 1 cut(s) 267
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.