Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004674

Physical Location & Seq

Genomic Coordinates Reverse (-)

12884300 .. 12887011

Gene Structure 2712 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G25100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGGCTGCTTCAAGTGCTGTCACCGCAAACTACGTCCTCAAGCCACCTCCATTCGCACTGGATGCTTTGGAGCCGCATATGAGCAAACAAACTCTGGAGTTTCACTGGGGAAAACATCACAGAGCTTACGTGGACAACCTCAAGAAACAGGTTCTTGGAACCGAGCTTGAAGGCAAGCCCTTAGAGCACATTATCCACAGCACTTACAACAATGGTGATCTCCTCCCTGCTTTCAACAACGCTGCTCAGGCGTGGAACCACGAGTTCTTCTGGGAGTCAATGAAACCAGGTGGTGGAGGAAAACCATCAGGAGAGCTTCTTGCTTTGCTTGAAAGAGATTTCACTTCTTATGAGAAGTTCTATGAAGAGTTCAATGCTGCTGCAGCCACTCAGTTTGGAGCTGGCTGGGCCTGGCTTGCTTATTCAAATGAAAAACTCAAAGTAGTGAAAACTCCCAATGCTGTGAATCCCCTTGTGCTCGGCTCTTTCCCATTGCTTACCATTGATGTCTGGGAGCATGCTTACTACCTTGACTTCCAGAACCGAAGACCAGATTACATAAAGACATTCATGACCAATCTTGTGTCTTGGGAAGCTGTAAGTGCCAGACTTGAGGCCGCCAAGGCTGCTTCTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0000303 GO:0000305 GO:0001101 GO:0003674 GO:0003824 GO:0004784 GO:0005488 GO:0005507 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005886 GO:0006801 GO:0006950 GO:0006979 GO:0007623 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009636 GO:0009642 GO:0009941 GO:0009987 GO:0010035 GO:0010038 GO:0010193 GO:0016020 GO:0016209 GO:0016491 GO:0016721 GO:0019430 GO:0019904 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0033554 GO:0034599 GO:0034614 GO:0042170 GO:0042221 GO:0042493 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046677 GO:0046686 GO:0046688 GO:0046872 GO:0046914 GO:0048511 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0071450 GO:0071451 GO:0071944 GO:0072593 GO:0097237 GO:0098754 GO:0098869 GO:1901700 GO:1901701 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04013 ko04068 ko04146 ko04211 ko04212 ko04213 ko05016 map04013 map04068 map04146 map04211 map04212 map04213 map05016

Pfam Domains

Protein Families

Sod_Fe_C Sod_Fe_N

Protein Analysis

212

Amino Acids

23.79

Weight (kDa)

6.06

Isoelectric Point (pI)

24.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sod_Fe_N	PF00081	11 - 95	1.4e-22	Iron/manganese superoxide dismutases, alpha-hairpin domain
Sod_Fe_C	PF02777	102 - 203	8.4e-36	Iron/manganese superoxide dismutases, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004674)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00651 AT4G25100 AT4G25100 AT4G25100 AT4G25100 AT4G25100 AT5G51100 AT5G51100 AT5G51100 AT5G51100 AT5G51100 AT5G51100
fragaria_vesca	FvH4_7g26501 FvH4_7g26501
malus_domestica	MD01G1173700.v1.1 MD07G1240700.v1.1
prunus_persica	Prupe.2G269400_v2.0.a1 Prupe.2G269400_v2.0.a1
pyrus_communis	pycom01g18560 pycom07g21700
rosa_chinensis	RchiOBHm_Chr1g0373101
rosa_laevigata	RLG00000026848
rosa_multiflora	Rmu_sc0002004.1_g000002
rosa_roxburghii	Rroxscaffold_4G00284450
rosa_rugosa	Rorug01G0376300 Rorug04G0079400
rosa_samantha	Rh1AG384700 Rh1BG348600 Rh1CG362000 Rh1DG379500
rosa_wichuraiana	Rw1G033930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	293
AciI	CCGC	3 cut(s)	24, 74, 618
AfiI	CCNNNNNNNGG	1 cut(s)	293
AgsI	TTSAA	6 cut(s)	12, 170, 235, 332, 373, 426
AjnI	CCWGG	2 cut(s)	286, 410
AluBI	AGCT	5 cut(s)	125, 166, 316, 401, 596
AluI	AGCT	5 cut(s)	125, 166, 316, 401, 596
Alw21I	GWGCWC	2 cut(s)	189, 480
AoxI	GGCC	2 cut(s)	408, 615
ApeKI	GCWGC	6 cut(s)	5, 242, 377, 380, 383, 626
AspS9I	GGNCC	1 cut(s)	408
AsuHPI	GGTGA	2 cut(s)	13, 227
BauI	CACGAG	1 cut(s)	260
BbsI	GAAGAC	1 cut(s)	553
Bbv12I	GWGCWC	2 cut(s)	189, 480
BbvI	GCAGC	5 cut(s)	229, 364, 367, 395, 613
BccI	CCATC	1 cut(s)	313
BciT130I	CCWGG	2 cut(s)	288, 412
BfmI	CTRYAG	1 cut(s)	381
BglI	GCCNNNNNGGC	1 cut(s)	623
BisI	GCNGC	8 cut(s)	6, 74, 243, 378, 381, 384, 618, 627
BlsI	GCNGC	8 cut(s)	7, 75, 244, 379, 382, 385, 619, 628
Bme1390I	CCNGG	2 cut(s)	288, 412
BmgT120I	GGNCC	1 cut(s)	408
BmiI	GGNNCC	3 cut(s)	72, 160, 257
BmrFI	CCNGG	2 cut(s)	288, 412
BmrI	ACTGGG	1 cut(s)	115
BmsI	GCATC	1 cut(s)	52
BmuI	ACTGGG	1 cut(s)	115
BpiI	GAAGAC	1 cut(s)	553
BpmI	CTGGAG	1 cut(s)	116
Bpu10I	CCTNAGC	1 cut(s)	246
BpuEI	CTTGAG	3 cut(s)	23, 125, 632
BsaAI	YACGTR	1 cut(s)	130
BsaJI	CCNNGG	1 cut(s)	621
Bsc4I	CCNNNNNNNGG	1 cut(s)	293
Bse1I	ACTGG	2 cut(s)	63, 110
Bse3DI	GCAATG	1 cut(s)	491
BseBI	CCWGG	2 cut(s)	288, 412
BseDI	CCNNGG	1 cut(s)	621
BseGI	GGATG	1 cut(s)	67
BseLI	CCNNNNNNNGG	1 cut(s)	293
BseMI	GCAATG	1 cut(s)	491
BseMII	CTCAG	2 cut(s)	260, 404
BseNI	ACTGG	2 cut(s)	63, 110
BseRI	GAGGAG	1 cut(s)	212
BseXI	GCAGC	5 cut(s)	229, 364, 367, 395, 613
BseYI	CCCAGC	1 cut(s)	405
BshFI	GGCC	2 cut(s)	410, 617
BsiHKAI	GWGCWC	2 cut(s)	189, 480
BslI	CCNNNNNNNGG	1 cut(s)	293
BsnI	GGCC	2 cut(s)	410, 617
Bsp1286I	GDGCHC	2 cut(s)	189, 480
Bsp143I	GATC	1 cut(s)	217
BspACI	CCGC	3 cut(s)	24, 74, 618
BspANI	GGCC	2 cut(s)	410, 617
BspCNI	CTCAG	2 cut(s)	259, 403
BspHI	TCATGA	1 cut(s)	570
BspLI	GGNNCC	3 cut(s)	72, 160, 257
BspMAI	CTGCAG	1 cut(s)	385
BsrDI	GCAATG	1 cut(s)	491
BsrI	ACTGG	2 cut(s)	63, 110
BssECI	CCNNGG	1 cut(s)	621
BssMI	GATC	1 cut(s)	217
BssSI	CACGAG	1 cut(s)	260
BssT1I	CCWWGG	1 cut(s)	621
Bst2BI	CACGAG	1 cut(s)	260
Bst2UI	CCWGG	2 cut(s)	288, 412
Bst6I	CTCTTC	1 cut(s)	360
BstAPI	GCANNNNNTGC	1 cut(s)	62
BstBAI	YACGTR	1 cut(s)	130
BstC8I	GCNNGC	4 cut(s)	176, 403, 417, 519
BstDEI	CTNAG	3 cut(s)	181, 246, 390
BstF5I	GGATG	1 cut(s)	67
BstKTI	GATC	1 cut(s)	220
BstMBI	GATC	1 cut(s)	217
BstNI	CCWGG	2 cut(s)	288, 412
BstNSI	RCATGY	1 cut(s)	521
BstSCI	CCNGG	2 cut(s)	286, 410
BstSFI	CTRYAG	1 cut(s)	381
BstV1I	GCAGC	5 cut(s)	229, 364, 367, 395, 613
BstV2I	GAAGAC	1 cut(s)	553
BsuRI	GGCC	2 cut(s)	410, 617
BtsCI	GGATG	1 cut(s)	67
BtsIMutI	CAGTG	2 cut(s)	56, 103
Cac8I	GCNNGC	4 cut(s)	176, 403, 417, 519
CciI	TCATGA	1 cut(s)	570
Cfr13I	GGNCC	1 cut(s)	408
CsiI	ACCWGGT	1 cut(s)	286
CspCI	CAANNNNNGTGG	2 cut(s)	376, 411
CviAII	CATG	2 cut(s)	518, 571
DdeI	CTNAG	3 cut(s)	181, 246, 390
DpnI	GATC	1 cut(s)	219
DpnII	GATC	1 cut(s)	217
Eam1104I	CTCTTC	1 cut(s)	360
EarI	CTCTTC	1 cut(s)	360
Eco130I	CCWWGG	1 cut(s)	621
EcoRII	CCWGG	2 cut(s)	286, 410
EcoT14I	CCWWGG	1 cut(s)	621
ErhI	CCWWGG	1 cut(s)	621
FaeI	CATG	2 cut(s)	521, 574
FaiI	YATR	7 cut(s)	78, 80, 351, 363, 519, 560, 572
FatI	CATG	2 cut(s)	517, 570
FauNDI	CATATG	1 cut(s)	78
Fnu4HI	GCNGC	8 cut(s)	6, 74, 243, 378, 381, 384, 618, 627
FokI	GGATG	1 cut(s)	74
Fsp4HI	GCNGC	8 cut(s)	6, 74, 243, 378, 381, 384, 618, 627
GluI	GCNGC	8 cut(s)	6, 74, 243, 378, 381, 384, 618, 627
GsaI	CCCAGC	1 cut(s)	409
GsuI	CTGGAG	1 cut(s)	116
HaeIII	GGCC	2 cut(s)	410, 617
Hin1II	CATG	2 cut(s)	521, 574
HinfI	GANTC	2 cut(s)	275, 466
HphI	GGTGA	2 cut(s)	13, 227
Hpy166II	GTNNAC	1 cut(s)	133
Hpy188III	TCNNGA	5 cut(s)	95, 142, 309, 538, 571
Hpy8I	GTNNAC	1 cut(s)	133
HpyAV	CCTTC	1 cut(s)	164
HpyCH4IV	ACGT	2 cut(s)	33, 129
HpyCH4V	TGCA	1 cut(s)	383
HpyF3I	CTNAG	3 cut(s)	181, 246, 390
HpySE526I	ACGT	2 cut(s)	33, 129
Hsp92II	CATG	2 cut(s)	521, 574
Kzo9I	GATC	1 cut(s)	217
LmnI	GCTCC	3 cut(s)	70, 398, 514
Lsp1109I	GCAGC	5 cut(s)	229, 364, 367, 395, 613
LweI	GCATC	1 cut(s)	52
MabI	ACCWGGT	1 cut(s)	286
MaeII	ACGT	2 cut(s)	33, 129
MaeIII	GTNAC	1 cut(s)	19
MalI	GATC	1 cut(s)	219
MboI	GATC	1 cut(s)	217
MboII	GAAGA	3 cut(s)	259, 377, 558
MhlI	GDGCHC	2 cut(s)	189, 480
MlyI	GAGTC	1 cut(s)	284
MnlI	CCTC	6 cut(s)	47, 57, 149, 233, 290, 607
MseI	TTAA	1 cut(s)	637
MspR9I	CCNGG	2 cut(s)	288, 412
MvaI	CCWGG	2 cut(s)	288, 412
NdeI	CATATG	1 cut(s)	78
NdeII	GATC	1 cut(s)	217
NlaIII	CATG	2 cut(s)	521, 574
NlaIV	GGNNCC	3 cut(s)	72, 160, 257
NmeAIII	GCCGAG	1 cut(s)	459
NmuCI	GTSAC	1 cut(s)	19
NspI	RCATGY	1 cut(s)	521
PaeI	GCATGC	1 cut(s)	521
PagI	TCATGA	1 cut(s)	570
PfeI	GAWTC	1 cut(s)	466
PflMI	CCANNNNNTGG	1 cut(s)	293
PkrI	GCNGC	8 cut(s)	7, 75, 244, 379, 382, 385, 619, 628
PleI	GAGTC	1 cut(s)	283
PpsI	GAGTC	1 cut(s)	283
Ppu21I	YACGTR	1 cut(s)	130
Psp6I	CCWGG	2 cut(s)	286, 410
PspFI	CCCAGC	1 cut(s)	405
PspGI	CCWGG	2 cut(s)	286, 410
PspN4I	GGNNCC	3 cut(s)	72, 160, 257
PspPI	GGNCC	1 cut(s)	408
PstI	CTGCAG	1 cut(s)	385
SaqAI	TTAA	1 cut(s)	637
SatI	GCNGC	8 cut(s)	6, 74, 243, 378, 381, 384, 618, 627
Sau3AI	GATC	1 cut(s)	217
Sau96I	GGNCC	1 cut(s)	408
SchI	GAGTC	1 cut(s)	284
ScrFI	CCNGG	2 cut(s)	288, 412
SduI	GDGCHC	2 cut(s)	189, 480
SexAI	ACCWGGT	1 cut(s)	286
SfaNI	GCATC	1 cut(s)	52
SfcI	CTRYAG	1 cut(s)	381
SmlI	CTYRAG	3 cut(s)	38, 140, 611
SmoI	CTYRAG	3 cut(s)	38, 140, 611
SphI	GCATGC	1 cut(s)	521
SsiI	CCGC	3 cut(s)	24, 74, 618
StyD4I	CCNGG	2 cut(s)	286, 410
StyI	CCWWGG	1 cut(s)	621
TaiI	ACGT	2 cut(s)	36, 132
TauI	GCSGC	2 cut(s)	76, 620
TfiI	GAWTC	1 cut(s)	466
Tru1I	TTAA	1 cut(s)	637
Tru9I	TTAA	1 cut(s)	637
TscAI	CASTG	2 cut(s)	63, 110
TseFI	GTSAC	1 cut(s)	19
TseI	GCWGC	6 cut(s)	5, 242, 377, 380, 383, 626
Tsp45I	GTSAC	1 cut(s)	19
TspDTI	ATGAA	4 cut(s)	296, 378, 444, 559
TspRI	CASTG	2 cut(s)	63, 110
Van91I	CCANNNNNTGG	1 cut(s)	293
XceI	RCATGY	1 cut(s)	521

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.