Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004674

Physical Location & Seq

Genomic Coordinates Reverse (-)

20773235 .. 20775739

Gene Structure 2505 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G51100.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGATGAATGTTGCAGTGACAGCCACTCCCTCGTCTCTCTTGTACTCTCCTCTGCTTCTTCCTTCTCAAGGGCCAAACCGGCGAATGCAATGGAAAAGAAACGGAAAGAGACGGTTAGGGACAAAGGTGGCTGTTTCCGGTGTTATCACAGCTGGATTTGAGCTGAAGCCACCTCCATATCCTCTTGATGCTCTGGAACCGCATATGAGCCGGGAAACCTTGGATTATCACTGGGGCAAACATCACAAAACTTATGTAGAGAACCTGAACAAGCAAATCTTAGGCACGGATCTAGATGCATTATCCTTGGAAGAAGTTGTGCTTCTTTCATACAACAAAGGCAATATGCTTCCTGCTTTCAACAACGCTGCACAGGCTTGGAACCACGAGTTCTTCTGGGAGTCTATCCAACCTGGAGGTGGAGGAAAGCCAACTGGAGAGCTCCTCAGATTAATAGAAAGAGATTTTGGGTCTTTCGAAGAGTTTTTGGAAAGGTTCAAGTCGGCTGCAGCTTCGAATTTTGGTTCGGGTTGGACATGGCTTGCATATAAGGCGAATAGACTTGACGTTGCAAATGCCGTTAATCCTCTCCCAAAGGAGGAAGACAAGAAACTTGTTATAGTGAAGACGCCCAATGCAGTAAATCCGCTCGTATGGGATTATTCTCCACTTCTCACCATTGATACCTGGGAGCACGCTTACTATCTGGATTTTGAGAACCGAAGAGCTGAATACATAAATACATTCATGGAAAAGCTTGTGTCATGGGAAACTGTAAGCACAAGGTTGGAATCCGCAATTGCTCGAGCAGTGCAAAGAGAACAAGAAGGAACAGAGACAGAAGATGAAGAGAATCCAGATGATGAAGTACCAGAGGTCTATTTAGATAGTGACATCGATGTATCTGAGGTTGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0000303 GO:0000305 GO:0003674 GO:0003824 GO:0004784 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006801 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009295 GO:0009314 GO:0009411 GO:0009416 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009636 GO:0009987 GO:0010035 GO:0016209 GO:0016491 GO:0016721 GO:0019430 GO:0033554 GO:0034599 GO:0034614 GO:0042221 GO:0042644 GO:0042646 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0071450 GO:0071451 GO:0072593 GO:0097237 GO:0098754 GO:0098869 GO:1901700 GO:1901701 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04013 ko04068 ko04146 ko04211 ko04212 ko04213 ko05016 map04013 map04068 map04146 map04211 map04212 map04213 map05016

Pfam Domains

Protein Families

Sod_Fe_C Sod_Fe_N

Protein Analysis

305

Amino Acids

34.66

Weight (kDa)

4.89

Isoelectric Point (pI)

40.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sod_Fe_N	PF00081	2 - 68	4.6e-15	Iron/manganese superoxide dismutases, alpha-hairpin domain
Sod_Fe_C	PF02777	76 - 126	2e-11	Iron/manganese superoxide dismutases, C-terminal domain
Sod_Fe_C	PF02777	132 - 194	9.8e-20	Iron/manganese superoxide dismutases, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004674)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00651 AT4G25100 AT4G25100 AT4G25100 AT4G25100 AT4G25100 AT5G51100 AT5G51100 AT5G51100 AT5G51100 AT5G51100 AT5G51100
fragaria_vesca	FvH4_7g26501 FvH4_7g26501
malus_domestica	MD01G1173700.v1.1 MD07G1240700.v1.1
prunus_persica	Prupe.2G269400_v2.0.a1 Prupe.2G269400_v2.0.a1
pyrus_communis	pycom01g18560 pycom07g21700
rosa_chinensis	RchiOBHm_Chr1g0373101
rosa_laevigata	RLG00000026848
rosa_multiflora	Rmu_sc0002004.1_g000002
rosa_roxburghii	Rroxscaffold_4G00284450
rosa_rugosa	Rorug01G0376300 Rorug04G0079400
rosa_samantha	Rh1AG384700 Rh1BG348600 Rh1CG362000 Rh1DG379500
rosa_wichuraiana	Rw1G033930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	649
AciI	CCGC	3 cut(s)	200, 647, 795
AclWI	GGATC	1 cut(s)	297
AcsI	RAATTY	1 cut(s)	517
AcuI	CTGAAG	1 cut(s)	185
AcyI	GRCGYC	1 cut(s)	629
AfaI	GTAC	2 cut(s)	44, 870
AfiI	CCNNNNNNNGG	3 cut(s)	68, 419, 598
AgsI	TTSAA	2 cut(s)	361, 499
AjnI	CCWGG	2 cut(s)	412, 686
AjuI	GAANNNNNNNTTGG	2 cut(s)	450, 482
AluBI	AGCT	6 cut(s)	152, 163, 442, 512, 728, 757
AluI	AGCT	6 cut(s)	152, 163, 442, 512, 728, 757
Alw21I	GWGCWC	2 cut(s)	444, 696
Alw26I	GTCTC	3 cut(s)	39, 103, 830
AlwI	GGATC	1 cut(s)	297
Ama87I	CYCGRG	1 cut(s)	804
AoxI	GGCC	1 cut(s)	71
ApeKI	GCWGC	3 cut(s)	368, 506, 509
ApoI	RAATTY	1 cut(s)	517
AseI	ATTAAT	1 cut(s)	452
AspS9I	GGNCC	1 cut(s)	71
AsuC2I	CCSGG	1 cut(s)	212
AsuHPI	GGTGA	1 cut(s)	667
AsuII	TTCGAA	2 cut(s)	477, 515
AvaI	CYCGRG	1 cut(s)	804
BanII	GRGCYC	1 cut(s)	444
BauI	CACGAG	1 cut(s)	386
BbsI	GAAGAC	2 cut(s)	609, 632
Bbv12I	GWGCWC	2 cut(s)	444, 696
BbvI	GCAGC	3 cut(s)	355, 493, 521
BceAI	ACGGC	1 cut(s)	563
BciT130I	CCWGG	2 cut(s)	414, 688
BcnI	CCSGG	1 cut(s)	212
BcoDI	GTCTC	3 cut(s)	39, 103, 830
BfaI	CTAG	1 cut(s)	293
BfmI	CTRYAG	1 cut(s)	507
BglI	GCCNNNNNGGC	1 cut(s)	79
BisI	GCNGC	3 cut(s)	369, 507, 510
BlsI	GCNGC	3 cut(s)	370, 508, 511
Bme1390I	CCNGG	3 cut(s)	212, 414, 688
BmeT110I	CYCGRG	1 cut(s)	804
BmgT120I	GGNCC	1 cut(s)	71
BmiI	GGNNCC	2 cut(s)	198, 383
BmrFI	CCNGG	3 cut(s)	212, 414, 688
BmrI	ACTGGG	1 cut(s)	241
BmsI	GCATC	2 cut(s)	178, 286
BmuI	ACTGGG	1 cut(s)	241
BpiI	GAAGAC	2 cut(s)	609, 632
BplI	GAGNNNNNCTC	2 cut(s)	429, 461
BpmI	CTGGAG	2 cut(s)	435, 456
Bpu14I	TTCGAA	2 cut(s)	477, 515
BpuEI	CTTGAG	1 cut(s)	51
BpuMI	CCSGG	1 cut(s)	212
Bsa29I	ATCGAT	1 cut(s)	897
BsaHI	GRCGYC	1 cut(s)	629
BsaJI	CCNNGG	3 cut(s)	219, 306, 687
BsaWI	WCCGGW	1 cut(s)	137
BsaXI	ACNNNNNCTCC	2 cut(s)	10, 40
Bsc4I	CCNNNNNNNGG	3 cut(s)	68, 419, 598
Bse118I	RCCGGY	1 cut(s)	78
Bse1I	ACTGG	2 cut(s)	236, 439
Bse3DI	GCAATG	1 cut(s)	95
BseBI	CCWGG	2 cut(s)	414, 688
BseCI	ATCGAT	1 cut(s)	897
BseDI	CCNNGG	3 cut(s)	219, 306, 687
BseLI	CCNNNNNNNGG	3 cut(s)	68, 419, 598
BseMI	GCAATG	1 cut(s)	95
BseMII	CTCAG	2 cut(s)	460, 897
BseNI	ACTGG	2 cut(s)	236, 439
BseRI	GAGGAG	2 cut(s)	39, 434
BseXI	GCAGC	3 cut(s)	355, 493, 521
BsgI	GTGCAG	1 cut(s)	354
BshFI	GGCC	1 cut(s)	73
BshVI	ATCGAT	1 cut(s)	897
BsiHKAI	GWGCWC	2 cut(s)	444, 696
BsiHKCI	CYCGRG	1 cut(s)	804
BsiSI	CCGG	3 cut(s)	79, 138, 211
BslFI	GGGAC	1 cut(s)	133
BslI	CCNNNNNNNGG	3 cut(s)	68, 419, 598
BsmAI	GTCTC	3 cut(s)	39, 103, 830
BsmBI	CGTCTC	2 cut(s)	39, 103
BsmFI	GGGAC	1 cut(s)	133
BsmI	GAATGC	1 cut(s)	90
BsnI	GGCC	1 cut(s)	73
BsoBI	CYCGRG	1 cut(s)	804
Bsp119I	TTCGAA	2 cut(s)	477, 515
Bsp1286I	GDGCHC	2 cut(s)	444, 696
Bsp143I	GATC	1 cut(s)	289
BspACI	CCGC	3 cut(s)	200, 647, 795
BspANI	GGCC	1 cut(s)	73
BspCNI	CTCAG	2 cut(s)	459, 898
BspDI	ATCGAT	1 cut(s)	897
BspLI	GGNNCC	2 cut(s)	198, 383
BspMAI	CTGCAG	1 cut(s)	511
BspPI	GGATC	1 cut(s)	297
BspQI	GCTCTTC	1 cut(s)	718
BspT104I	TTCGAA	2 cut(s)	477, 515
BsrBI	CCGCTC	1 cut(s)	649
BsrDI	GCAATG	1 cut(s)	95
BsrFI	RCCGGY	1 cut(s)	78
BsrI	ACTGG	2 cut(s)	236, 439
BssAI	RCCGGY	1 cut(s)	78
BssECI	CCNNGG	3 cut(s)	219, 306, 687
BssMI	GATC	1 cut(s)	289
BssNI	GRCGYC	1 cut(s)	629
BssSI	CACGAG	1 cut(s)	386
BssT1I	CCWWGG	2 cut(s)	219, 306
Bst2BI	CACGAG	1 cut(s)	386
Bst2UI	CCWGG	2 cut(s)	414, 688
Bst4CI	ACNGT	2 cut(s)	114, 775
Bst6I	CTCTTC	3 cut(s)	474, 718, 843
BstACI	GRCGYC	1 cut(s)	629
BstBI	TTCGAA	2 cut(s)	477, 515
BstC8I	GCNNGC	2 cut(s)	543, 696
BstDEI	CTNAG	3 cut(s)	280, 446, 906
BstENI	CCTNNNNNAGG	1 cut(s)	66
BstKTI	GATC	1 cut(s)	292
BstMAI	GTCTC	3 cut(s)	39, 103, 830
BstMBI	GATC	1 cut(s)	289
BstMWI	GCNNNNNNNGC	4 cut(s)	20, 79, 374, 551
BstNI	CCWGG	2 cut(s)	414, 688
BstSCI	CCNGG	3 cut(s)	210, 412, 686
BstSFI	CTRYAG	1 cut(s)	507
BstV1I	GCAGC	3 cut(s)	355, 493, 521
BstV2I	GAAGAC	2 cut(s)	609, 632
BstX2I	RGATCY	1 cut(s)	289
BstYI	RGATCY	1 cut(s)	289
Bsu15I	ATCGAT	1 cut(s)	897
BsuRI	GGCC	1 cut(s)	73
BsuTUI	ATCGAT	1 cut(s)	897
BtsI	GCAGTG	2 cut(s)	21, 816
BtsIMutI	CAGTG	3 cut(s)	21, 229, 816
Cac8I	GCNNGC	2 cut(s)	543, 696
Cfr10I	RCCGGY	1 cut(s)	78
Cfr13I	GGNCC	1 cut(s)	71
ClaI	ATCGAT	1 cut(s)	897
CseI	GACGC	1 cut(s)	637
Csp6I	GTAC	2 cut(s)	43, 869
CviAII	CATG	3 cut(s)	537, 748, 765
CviQI	GTAC	2 cut(s)	43, 869
DdeI	CTNAG	3 cut(s)	280, 446, 906
DpnI	GATC	1 cut(s)	291
DpnII	GATC	1 cut(s)	289
Eam1104I	CTCTTC	3 cut(s)	474, 718, 843
EarI	CTCTTC	3 cut(s)	474, 718, 843
Ecl136II	GAGCTC	1 cut(s)	442
Eco130I	CCWWGG	2 cut(s)	219, 306
Eco24I	GRGCYC	1 cut(s)	444
Eco53kI	GAGCTC	1 cut(s)	442
Eco57I	CTGAAG	1 cut(s)	185
Eco88I	CYCGRG	1 cut(s)	804
EcoICRI	GAGCTC	1 cut(s)	442
EcoNI	CCTNNNNNAGG	1 cut(s)	66
EcoRII	CCWGG	2 cut(s)	412, 686
EcoT14I	CCWWGG	2 cut(s)	219, 306
EcoT22I	ATGCAT	1 cut(s)	301
EcoT38I	GRGCYC	1 cut(s)	444
ErhI	CCWWGG	2 cut(s)	219, 306
Esp3I	CGTCTC	2 cut(s)	39, 103
FaeI	CATG	3 cut(s)	540, 751, 768
FalI	AAGNNNNNCTT	4 cut(s)	263, 295, 306, 338
FaqI	GGGAC	1 cut(s)	133
FatI	CATG	3 cut(s)	536, 747, 764
FauNDI	CATATG	1 cut(s)	204
Fnu4HI	GCNGC	3 cut(s)	369, 507, 510
FriOI	GRGCYC	1 cut(s)	444
Fsp4HI	GCNGC	3 cut(s)	369, 507, 510
FspBI	CTAG	1 cut(s)	293
GluI	GCNGC	3 cut(s)	369, 507, 510
GsuI	CTGGAG	2 cut(s)	435, 456
HaeIII	GGCC	1 cut(s)	73
HapII	CCGG	3 cut(s)	79, 138, 211
HgaI	GACGC	1 cut(s)	637
Hin1I	GRCGYC	1 cut(s)	629
Hin1II	CATG	3 cut(s)	540, 751, 768
HincII	GTYRAC	1 cut(s)	913
HindII	GTYRAC	1 cut(s)	913
HindIII	AAGCTT	1 cut(s)	755
HinfI	GANTC	3 cut(s)	401, 791, 853
HpaII	CCGG	3 cut(s)	79, 138, 211
HphI	GGTGA	1 cut(s)	667
Hpy166II	GTNNAC	1 cut(s)	913
Hpy188I	TCNGA	2 cut(s)	449, 907
Hpy188III	TCNNGA	5 cut(s)	185, 194, 293, 707, 857
Hpy8I	GTNNAC	1 cut(s)	913
HpyAV	CCTTC	2 cut(s)	72, 821
HpyCH4III	ACNGT	2 cut(s)	114, 775
HpyCH4IV	ACGT	1 cut(s)	567
HpyCH4V	TGCA	9 cut(s)	14, 88, 299, 371, 509, 545, 572, 638, 814
HpyF10VI	GCNNNNNNNGC	4 cut(s)	20, 79, 374, 551
HpyF3I	CTNAG	3 cut(s)	280, 446, 906
HpySE526I	ACGT	1 cut(s)	567
Hsp92I	GRCGYC	1 cut(s)	629
Hsp92II	CATG	3 cut(s)	540, 751, 768
Kzo9I	GATC	1 cut(s)	289
LguI	GCTCTTC	1 cut(s)	718
LmnI	GCTCC	2 cut(s)	447, 691
Lsp1109I	GCAGC	3 cut(s)	355, 493, 521
LweI	GCATC	2 cut(s)	178, 286
MaeI	CTAG	1 cut(s)	293
MaeII	ACGT	1 cut(s)	567
MaeIII	GTNAC	2 cut(s)	16, 890
MalI	GATC	1 cut(s)	291
MbiI	CCGCTC	1 cut(s)	649
MboI	GATC	1 cut(s)	289
MboII	GAAGA	9 cut(s)	50, 323, 385, 491, 614, 637, 735, 854, 860
MfeI	CAATTG	1 cut(s)	798
MflI	RGATCY	1 cut(s)	289
MhlI	GDGCHC	2 cut(s)	444, 696
MluCI	AATT	2 cut(s)	517, 798
MlyI	GAGTC	1 cut(s)	410
MmeI	TCCRAC	3 cut(s)	433, 512, 768
Mph1103I	ATGCAT	1 cut(s)	301
MseI	TTAA	2 cut(s)	452, 582
MspA1I	CMGCKG	1 cut(s)	152
MspI	CCGG	3 cut(s)	79, 138, 211
MspR9I	CCNGG	3 cut(s)	212, 414, 688
MunI	CAATTG	1 cut(s)	798
Mva1269I	GAATGC	1 cut(s)	90
MvaI	CCWGG	2 cut(s)	414, 688
MwoI	GCNNNNNNNGC	4 cut(s)	20, 79, 374, 551
NciI	CCSGG	1 cut(s)	212
NdeI	CATATG	1 cut(s)	204
NdeII	GATC	1 cut(s)	289
NlaIII	CATG	3 cut(s)	540, 751, 768
NlaIV	GGNNCC	2 cut(s)	198, 383
NmuCI	GTSAC	2 cut(s)	16, 890
NsiI	ATGCAT	1 cut(s)	301
NspV	TTCGAA	2 cut(s)	477, 515
PaeR7I	CTCGAG	1 cut(s)	804
PciSI	GCTCTTC	1 cut(s)	718
PctI	GAATGC	1 cut(s)	90
PfeI	GAWTC	2 cut(s)	791, 853
PkrI	GCNGC	3 cut(s)	370, 508, 511
PleI	GAGTC	1 cut(s)	409
PpsI	GAGTC	1 cut(s)	409
PshBI	ATTAAT	1 cut(s)	452
Psp124BI	GAGCTC	1 cut(s)	444
Psp6I	CCWGG	2 cut(s)	412, 686
PspGI	CCWGG	2 cut(s)	412, 686
PspN4I	GGNNCC	2 cut(s)	198, 383
PspPI	GGNCC	1 cut(s)	71
PspXI	VCTCGAGB	1 cut(s)	804
PstI	CTGCAG	1 cut(s)	511
PsuI	RGATCY	1 cut(s)	289
PvuII	CAGCTG	1 cut(s)	152
RsaI	GTAC	2 cut(s)	44, 870
RsaNI	GTAC	2 cut(s)	43, 869
SacI	GAGCTC	1 cut(s)	444
SapI	GCTCTTC	1 cut(s)	718
SaqAI	TTAA	2 cut(s)	452, 582
SatI	GCNGC	3 cut(s)	369, 507, 510
Sau3AI	GATC	1 cut(s)	289
Sau96I	GGNCC	1 cut(s)	71
SchI	GAGTC	1 cut(s)	410
ScrFI	CCNGG	3 cut(s)	212, 414, 688
SduI	GDGCHC	2 cut(s)	444, 696
SfaNI	GCATC	2 cut(s)	178, 286
SfcI	CTRYAG	1 cut(s)	507
Sfr274I	CTCGAG	1 cut(s)	804
SfuI	TTCGAA	2 cut(s)	477, 515
SlaI	CTCGAG	1 cut(s)	804
SmlI	CTYRAG	2 cut(s)	66, 804
SmoI	CTYRAG	2 cut(s)	66, 804
Sse9I	AATT	2 cut(s)	517, 798
SsiI	CCGC	3 cut(s)	200, 647, 795
SspMI	CTAG	1 cut(s)	293
SstI	GAGCTC	1 cut(s)	444
StyD4I	CCNGG	3 cut(s)	210, 412, 686
StyI	CCWWGG	2 cut(s)	219, 306
TaaI	ACNGT	2 cut(s)	114, 775
TaiI	ACGT	1 cut(s)	570
TaqI	TCGA	4 cut(s)	477, 515, 805, 897
TasI	AATT	2 cut(s)	517, 798
TatI	WGTACW	1 cut(s)	42
TfiI	GAWTC	2 cut(s)	791, 853
Tru1I	TTAA	2 cut(s)	452, 582
Tru9I	TTAA	2 cut(s)	452, 582
TscAI	CASTG	3 cut(s)	21, 236, 816
TseFI	GTSAC	2 cut(s)	16, 890
TseI	GCWGC	3 cut(s)	368, 506, 509
Tsp45I	GTSAC	2 cut(s)	16, 890
TspDTI	ATGAA	5 cut(s)	20, 318, 736, 861, 879
TspGWI	ACGGA	2 cut(s)	117, 302
TspRI	CASTG	3 cut(s)	21, 236, 816
VspI	ATTAAT	1 cut(s)	452
XagI	CCTNNNNNAGG	1 cut(s)	66
XapI	RAATTY	1 cut(s)	517
XbaI	TCTAGA	1 cut(s)	292
XcmI	CCANNNNNNNNNTGG	1 cut(s)	416
XhoI	CTCGAG	1 cut(s)	804
XspI	CTAG	1 cut(s)	293
Zsp2I	ATGCAT	1 cut(s)	301

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.