pycom07g21700

Superoxide dismutase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
Physical Location & Seq
Forward (+)
23310575 .. 23312916
2342 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g21700.6

Sequence Viewer

Length: 957 bp
ATGTTAGCACCGGTTGCAGTTGCAGCGGCAGTAACAACAGCGCTAGCCACGCCTAGTTCGCTAACCTGCGCACTGGGTCCGTCATGGCAAGGACTCCATGGAAGTCTGGGACCAGCTCGAAGATTGCAATGGCCAAAGAAACAGAGACAATGCAGAAGGAAAGTCGGCGCCATTGATATTAGGGCACAATTCGAGCTGAAGCCTCCTCCATATCTACTGGATGCATTGGAGCCACATATGAGCAAGGAGACGTTAGAATACCACTGGGGGAAGCACCATAGAGGTTATGTGGATAACCTAAACAAGATGATAGCGGGAACTGAACTAGATGAATTGTCGTTGGAGGATATCATACTTGCTACATACAACAAGGGGGATCTTCTCCCCCCTTTCAACCAGGCAGCGCAGACCTGGAACCATGACTTCTTCTGGGAATCCATGAAACCAGGTGGCGGGGGAAAACCTTCCGGGGAACTTCTAGAACTAATTAATAGAGACTTTGGTTCTTTTGAGAGATTGATTGACGACTTAAGGTCAGCTGCAAGTACACAGTTTGGCTCTGGCTGGGCTTGGCTTGCATATAAAGCGAATAGACTTGATGTTGGAAACGCAGTAAATCCTAAGCGATCTGATGAAGACAAGAAGCTTGTAGTGGTGAAGAGTCCTAATGCCGTTAACCCCCTTATTTGGGATTATTCCCCGCTCCTTACTATCGATGTTTGGGAGCATGCTTACTACCTCGATTTTCAGAACCGGCGAGCAGATTACATATCAGTCTTCCTGGAGAAACTCGTATCATGGGAAGCAGTCAGTTCTAGGCTTGAAATAGCAAAGGCTCGAGCTACTGAAAGAGAGGAAGAAGAAGAGAGGAAGAAAAGAGAGGAGGAGAAGACATCAGACAGCGAAGTTCCAGAGATTTATGTGGACAACAAGAGCGATGACTCAGAGACCGAATGA

Protein Analysis

319

Amino Acids

36.03

Weight (kDa)

5.36

Isoelectric Point (pI)

47.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 70
Acc36I ACCTGC 1 cut(s) 74
AccB1I GGYRCC 1 cut(s) 167
AccBSI CCGCTC 1 cut(s) 703
AciI CCGC 4 cut(s) 26, 314, 453, 701
AclWI GGATC 1 cut(s) 384
AcoI YGGCCR 1 cut(s) 131
AcuI CTGAAG 1 cut(s) 218
AcyI GRCGYC 1 cut(s) 168
AfaI GTAC 1 cut(s) 547
AfeI AGCGCT 1 cut(s) 42
AfiI CCNNNNNNNGG 3 cut(s) 452, 687, 688
AflII CTTAAG 1 cut(s) 529
AgeI ACCGGT 1 cut(s) 10
AgsI TTSAA 2 cut(s) 394, 824
AhdI GACNNNNNGTC 1 cut(s) 532
AjnI CCWGG 4 cut(s) 396, 410, 445, 780
AluBI AGCT 5 cut(s) 116, 196, 539, 646, 842
AluI AGCT 5 cut(s) 116, 196, 539, 646, 842
Alw26I GTCTC 4 cut(s) 139, 242, 489, 941
AlwI GGATC 1 cut(s) 384
Ama87I CYCGRG 1 cut(s) 837
Aor51HI AGCGCT 1 cut(s) 42
AoxI GGCC 1 cut(s) 131
ApeKI GCWGC 3 cut(s) 23, 401, 539
AseI ATTAAT 1 cut(s) 489
AsiGI ACCGGT 1 cut(s) 10
Asp700I GAANNNNTTC 1 cut(s) 463
AspLEI GCGC 4 cut(s) 43, 71, 170, 406
AspS9I GGNCC 2 cut(s) 77, 110
AsuC2I CCSGG 1 cut(s) 469
AsuHPI GGTGA 1 cut(s) 667
AsuNHI GCTAGC 1 cut(s) 43
AvaI CYCGRG 1 cut(s) 837
AvaII GGWCC 2 cut(s) 77, 110
BaeGI GKGCMC 1 cut(s) 187
BalI TGGCCA 1 cut(s) 133
BanI GGYRCC 1 cut(s) 167
BbsI GAAGAC 3 cut(s) 642, 769, 896
BbvI GCAGC 3 cut(s) 35, 413, 526
BceAI ACGGC 1 cut(s) 656
BciT130I CCWGG 4 cut(s) 398, 412, 447, 782
BcnI CCSGG 1 cut(s) 469
BcoDI GTCTC 4 cut(s) 139, 242, 489, 941
BfaI CTAG 5 cut(s) 44, 54, 326, 479, 816
BfoI RGCGCY 2 cut(s) 44, 171
BfrI CTTAAG 1 cut(s) 529
BfuAI ACCTGC 1 cut(s) 74
BisI GCNGC 4 cut(s) 24, 27, 402, 540
BlsI GCNGC 4 cut(s) 25, 28, 403, 541
Bme1390I CCNGG 5 cut(s) 398, 412, 447, 469, 782
Bme18I GGWCC 2 cut(s) 77, 110
BmeRI GACNNNNNGTC 1 cut(s) 532
BmeT110I CYCGRG 1 cut(s) 837
BmgT120I GGNCC 2 cut(s) 77, 110
BmiI GGNNCC 5 cut(s) 78, 111, 169, 231, 416
BmrFI CCNGG 5 cut(s) 398, 412, 447, 469, 782
BmrI ACTGGG 2 cut(s) 83, 274
BmsI GCATC 1 cut(s) 211
BmtI GCTAGC 1 cut(s) 47
BmuI ACTGGG 2 cut(s) 83, 274
BpiI GAAGAC 3 cut(s) 642, 769, 896
BpmI CTGGAG 1 cut(s) 803
Bpu10I CCTNAGC 1 cut(s) 621
BpuMI CCSGG 1 cut(s) 469
Bsa29I ATCGAT 1 cut(s) 714
BsaHI GRCGYC 1 cut(s) 168
BsaI GGTCTC 1 cut(s) 941
BsaJI CCNNGG 2 cut(s) 97, 468
BsaWI WCCGGW 1 cut(s) 10
Bsc4I CCNNNNNNNGG 3 cut(s) 452, 687, 688
Bse118I RCCGGY 2 cut(s) 10, 753
Bse1I ACTGG 3 cut(s) 78, 222, 269
Bse3DI GCAATG 1 cut(s) 134
BseBI CCWGG 4 cut(s) 398, 412, 447, 782
BseCI ATCGAT 1 cut(s) 714
BseDI CCNNGG 2 cut(s) 97, 468
BseGI GGATG 1 cut(s) 226
BseLI CCNNNNNNNGG 3 cut(s) 452, 687, 688
BseMI GCAATG 1 cut(s) 134
BseMII CTCAG 1 cut(s) 957
BseNI ACTGG 3 cut(s) 78, 222, 269
BseRI GAGGAG 3 cut(s) 195, 896, 899
BseSI GKGCMC 1 cut(s) 187
BseXI GCAGC 3 cut(s) 35, 413, 526
BseYI CCCAGC 1 cut(s) 564
BshFI GGCC 1 cut(s) 133
BshNI GGYRCC 1 cut(s) 167
BshTI ACCGGT 1 cut(s) 10
BshVI ATCGAT 1 cut(s) 714
BsiHKCI CYCGRG 1 cut(s) 837
BsiSI CCGG 3 cut(s) 11, 468, 754
BslFI GGGAC 1 cut(s) 123
BslI CCNNNNNNNGG 3 cut(s) 452, 687, 688
BsmAI GTCTC 4 cut(s) 139, 242, 489, 941
BsmBI CGTCTC 1 cut(s) 242
BsmFI GGGAC 1 cut(s) 123
BsnI GGCC 1 cut(s) 133
Bso31I GGTCTC 1 cut(s) 941
BsoBI CYCGRG 1 cut(s) 837
Bsp1286I GDGCHC 1 cut(s) 187
Bsp143I GATC 2 cut(s) 376, 626
Bsp19I CCATGG 1 cut(s) 97
BspACI CCGC 4 cut(s) 26, 314, 453, 701
BspANI GGCC 1 cut(s) 133
BspCNI CTCAG 1 cut(s) 956
BspDI ATCGAT 1 cut(s) 714
BspLI GGNNCC 5 cut(s) 78, 111, 169, 231, 416
BspMI ACCTGC 1 cut(s) 74
BspOI GCTAGC 1 cut(s) 47
BspPI GGATC 1 cut(s) 384
BspT107I GGYRCC 1 cut(s) 167
BspTI CTTAAG 1 cut(s) 529
BspTNI GGTCTC 1 cut(s) 941
BsrBI CCGCTC 1 cut(s) 703
BsrDI GCAATG 1 cut(s) 134
BsrFI RCCGGY 2 cut(s) 10, 753
BsrI ACTGG 3 cut(s) 78, 222, 269
BssAI RCCGGY 2 cut(s) 10, 753
BssECI CCNNGG 2 cut(s) 97, 468
BssMI GATC 2 cut(s) 376, 626
BssNI GRCGYC 1 cut(s) 168
BssT1I CCWWGG 1 cut(s) 97
Bst2UI CCWGG 4 cut(s) 398, 412, 447, 782
Bst4CI ACNGT 1 cut(s) 552
Bst6I CTCTTC 2 cut(s) 653, 858
BstACI GRCGYC 1 cut(s) 168
BstAFI CTTAAG 1 cut(s) 529
BstAPI GCANNNNNTGC 1 cut(s) 14
BstC8I GCNNGC 4 cut(s) 45, 576, 729, 759
BstDEI CTNAG 2 cut(s) 621, 943
BstDSI CCRYGG 1 cut(s) 97
BstF5I GGATG 1 cut(s) 226
BstH2I RGCGCY 2 cut(s) 44, 171
BstHHI GCGC 4 cut(s) 43, 71, 170, 406
BstKTI GATC 2 cut(s) 379, 629
BstMAI GTCTC 4 cut(s) 139, 242, 489, 941
BstMBI GATC 2 cut(s) 376, 626
BstMWI GCNNNNNNNGC 6 cut(s) 14, 23, 49, 58, 575, 584
BstNI CCWGG 4 cut(s) 398, 412, 447, 782
BstNSI RCATGY 1 cut(s) 731
BstSCI CCNGG 5 cut(s) 396, 410, 445, 467, 780
BstSLI GKGCMC 1 cut(s) 187
BstV1I GCAGC 3 cut(s) 35, 413, 526
BstV2I GAAGAC 3 cut(s) 642, 769, 896
BstX2I RGATCY 1 cut(s) 376
BstYI RGATCY 1 cut(s) 376
Bsu15I ATCGAT 1 cut(s) 714
BsuRI GGCC 1 cut(s) 133
BsuTUI ATCGAT 1 cut(s) 714
BtgI CCRYGG 1 cut(s) 97
BtgZI GCGATG 1 cut(s) 951
BtsCI GGATG 1 cut(s) 226
BtsIMutI CAGTG 2 cut(s) 71, 262
BveI ACCTGC 1 cut(s) 74
Cac8I GCNNGC 4 cut(s) 45, 576, 729, 759
CfoI GCGC 4 cut(s) 43, 71, 170, 406
Cfr10I RCCGGY 2 cut(s) 10, 753
Cfr13I GGNCC 2 cut(s) 77, 110
ClaI ATCGAT 1 cut(s) 714
CsiI ACCWGGT 1 cut(s) 445
Csp6I GTAC 1 cut(s) 546
CspAI ACCGGT 1 cut(s) 10
CviAII CATG 6 cut(s) 84, 98, 419, 439, 728, 798
CviQI GTAC 1 cut(s) 546
DdeI CTNAG 2 cut(s) 621, 943
DinI GGCGCC 1 cut(s) 169
DpnI GATC 2 cut(s) 378, 628
DpnII GATC 2 cut(s) 376, 626
DriI GACNNNNNGTC 1 cut(s) 532
EaeI YGGCCR 1 cut(s) 131
Eam1104I CTCTTC 2 cut(s) 653, 858
Eam1105I GACNNNNNGTC 1 cut(s) 532
EarI CTCTTC 2 cut(s) 653, 858
Eco130I CCWWGG 1 cut(s) 97
Eco31I GGTCTC 1 cut(s) 941
Eco32I GATATC 1 cut(s) 349
Eco47I GGWCC 2 cut(s) 77, 110
Eco47III AGCGCT 1 cut(s) 42
Eco57I CTGAAG 1 cut(s) 218
Eco88I CYCGRG 1 cut(s) 837
EcoRII CCWGG 4 cut(s) 396, 410, 445, 780
EcoRV GATATC 1 cut(s) 349
EcoT14I CCWWGG 1 cut(s) 97
EcoT22I ATGCAT 1 cut(s) 226
EgeI GGCGCC 1 cut(s) 169
EheI GGCGCC 1 cut(s) 169
ErhI CCWWGG 1 cut(s) 97
Esp3I CGTCTC 1 cut(s) 242
FaeI CATG 6 cut(s) 87, 101, 422, 442, 731, 801
FaqI GGGAC 1 cut(s) 123
FatI CATG 6 cut(s) 83, 97, 418, 438, 727, 797
FauI CCCGC 3 cut(s) 307, 446, 708
FauNDI CATATG 1 cut(s) 237
Fnu4HI GCNGC 4 cut(s) 24, 27, 402, 540
FokI GGATG 1 cut(s) 233
Fsp4HI GCNGC 4 cut(s) 24, 27, 402, 540
FspBI CTAG 5 cut(s) 44, 54, 326, 479, 816
FspI TGCGCA 1 cut(s) 70
GlaI GCGC 4 cut(s) 42, 70, 169, 405
GluI GCNGC 4 cut(s) 24, 27, 402, 540
GsaI CCCAGC 1 cut(s) 568
GsuI CTGGAG 1 cut(s) 803
HaeII RGCGCY 2 cut(s) 44, 171
HaeIII GGCC 1 cut(s) 133
HapII CCGG 3 cut(s) 11, 468, 754
HhaI GCGC 4 cut(s) 43, 71, 170, 406
Hin1I GRCGYC 1 cut(s) 168
Hin1II CATG 6 cut(s) 87, 101, 422, 442, 731, 801
Hin6I GCGC 4 cut(s) 41, 69, 168, 404
HinP1I GCGC 4 cut(s) 41, 69, 168, 404
HincII GTYRAC 1 cut(s) 676
HindII GTYRAC 1 cut(s) 676
HindIII AAGCTT 1 cut(s) 644
HinfI GANTC 4 cut(s) 93, 434, 661, 941
HpaI GTTAAC 1 cut(s) 676
HpaII CCGG 3 cut(s) 11, 468, 754
HphI GGTGA 1 cut(s) 667
Hpy166II GTNNAC 3 cut(s) 548, 676, 925
Hpy188I TCNGA 4 cut(s) 631, 750, 898, 946
Hpy188III TCNNGA 2 cut(s) 479, 911
Hpy8I GTNNAC 3 cut(s) 548, 676, 925
HpyAV CCTTC 2 cut(s) 150, 474
HpyCH4III ACNGT 1 cut(s) 552
HpyCH4IV ACGT 1 cut(s) 251
HpyCH4V TGCA 7 cut(s) 17, 23, 127, 153, 224, 542, 578
HpyF10VI GCNNNNNNNGC 6 cut(s) 14, 23, 49, 58, 575, 584
HpyF3I CTNAG 2 cut(s) 621, 943
HpySE526I ACGT 1 cut(s) 251
Hsp92I GRCGYC 1 cut(s) 168
Hsp92II CATG 6 cut(s) 87, 101, 422, 442, 731, 801
HspAI GCGC 4 cut(s) 41, 69, 168, 404
KasI GGCGCC 1 cut(s) 167
KspAI GTTAAC 1 cut(s) 676
Kzo9I GATC 2 cut(s) 376, 626
LmnI GCTCC 3 cut(s) 229, 708, 724
Lsp1109I GCAGC 3 cut(s) 35, 413, 526
LweI GCATC 1 cut(s) 211
MabI ACCWGGT 1 cut(s) 445
MaeI CTAG 5 cut(s) 44, 54, 326, 479, 816
MaeII ACGT 1 cut(s) 251
MaeIII GTNAC 1 cut(s) 31
MalI GATC 2 cut(s) 378, 628
MbiI CCGCTC 1 cut(s) 703
MboI GATC 2 cut(s) 376, 626
MflI RGATCY 1 cut(s) 376
MhlI GDGCHC 1 cut(s) 187
MlsI TGGCCA 1 cut(s) 133
MluCI AATT 3 cut(s) 188, 332, 486
MluNI TGGCCA 1 cut(s) 133
Mly113I GGCGCC 1 cut(s) 168
MlyI GAGTC 3 cut(s) 87, 670, 935
MmeI TCCRAC 2 cut(s) 321, 583
MnlI CCTC 9 cut(s) 213, 216, 275, 337, 749, 847, 861, 874, 877
Mox20I TGGCCA 1 cut(s) 133
Mph1103I ATGCAT 1 cut(s) 226
MroXI GAANNNNTTC 1 cut(s) 463
MscI TGGCCA 1 cut(s) 133
MseI TTAA 3 cut(s) 489, 530, 675
Msp20I TGGCCA 1 cut(s) 133
MspA1I CMGCKG 2 cut(s) 26, 539
MspCI CTTAAG 1 cut(s) 529
MspI CCGG 3 cut(s) 11, 468, 754
MspR9I CCNGG 5 cut(s) 398, 412, 447, 469, 782
MvaI CCWGG 4 cut(s) 398, 412, 447, 782
MwoI GCNNNNNNNGC 6 cut(s) 14, 23, 49, 58, 575, 584
NarI GGCGCC 1 cut(s) 168
NciI CCSGG 1 cut(s) 469
NcoI CCATGG 1 cut(s) 97
NdeI CATATG 1 cut(s) 237
NdeII GATC 2 cut(s) 376, 626
NheI GCTAGC 1 cut(s) 43
NlaIII CATG 6 cut(s) 87, 101, 422, 442, 731, 801
NlaIV GGNNCC 5 cut(s) 78, 111, 169, 231, 416
NsbI TGCGCA 1 cut(s) 70
NsiI ATGCAT 1 cut(s) 226
NspI RCATGY 1 cut(s) 731
PaeI GCATGC 1 cut(s) 731
PaeR7I CTCGAG 1 cut(s) 837
PdmI GAANNNNTTC 1 cut(s) 463
PfeI GAWTC 1 cut(s) 434
PfoI TCCNGGA 1 cut(s) 780
PinAI ACCGGT 1 cut(s) 10
PkrI GCNGC 4 cut(s) 25, 28, 403, 541
PleI GAGTC 3 cut(s) 87, 669, 935
PluTI GGCGCC 1 cut(s) 171
PpsI GAGTC 3 cut(s) 87, 669, 935
PshBI ATTAAT 1 cut(s) 489
Psp6I CCWGG 4 cut(s) 396, 410, 445, 780
PspFI CCCAGC 1 cut(s) 564
PspGI CCWGG 4 cut(s) 396, 410, 445, 780
PspN4I GGNNCC 5 cut(s) 78, 111, 169, 231, 416
PspPI GGNCC 2 cut(s) 77, 110
PspXI VCTCGAGB 1 cut(s) 837
PsuI RGATCY 1 cut(s) 376
PvuII CAGCTG 1 cut(s) 539
RsaI GTAC 1 cut(s) 547
RsaNI GTAC 1 cut(s) 546
SaqAI TTAA 3 cut(s) 489, 530, 675
SatI GCNGC 4 cut(s) 24, 27, 402, 540
Sau3AI GATC 2 cut(s) 376, 626
Sau96I GGNCC 2 cut(s) 77, 110
SchI GAGTC 3 cut(s) 87, 670, 935
ScrFI CCNGG 5 cut(s) 398, 412, 447, 469, 782
SduI GDGCHC 1 cut(s) 187
SexAI ACCWGGT 1 cut(s) 445
SfaNI GCATC 1 cut(s) 211
SfoI GGCGCC 1 cut(s) 169
Sfr274I CTCGAG 1 cut(s) 837
SinI GGWCC 2 cut(s) 77, 110
SlaI CTCGAG 1 cut(s) 837
SmlI CTYRAG 2 cut(s) 529, 837
SmoI CTYRAG 2 cut(s) 529, 837
SphI GCATGC 1 cut(s) 731
Sse9I AATT 3 cut(s) 188, 332, 486
SsiI CCGC 4 cut(s) 26, 314, 453, 701
SspDI GGCGCC 1 cut(s) 167
SspMI CTAG 5 cut(s) 44, 54, 326, 479, 816
StyD4I CCNGG 5 cut(s) 396, 410, 445, 467, 780
StyI CCWWGG 1 cut(s) 97
TaaI ACNGT 1 cut(s) 552
TaiI ACGT 1 cut(s) 254
TaqI TCGA 5 cut(s) 118, 192, 714, 741, 838
TasI AATT 3 cut(s) 188, 332, 486
TatI WGTACW 1 cut(s) 545
TauI GCSGC 1 cut(s) 29
TfiI GAWTC 1 cut(s) 434
Tru1I TTAA 3 cut(s) 489, 530, 675
Tru9I TTAA 3 cut(s) 489, 530, 675
TscAI CASTG 2 cut(s) 78, 269
TseI GCWGC 3 cut(s) 23, 401, 539
TspDTI ATGAA 3 cut(s) 345, 455, 648
TspGWI ACGGA 1 cut(s) 69
TspRI CASTG 2 cut(s) 78, 269
Vha464I CTTAAG 1 cut(s) 529
VpaK11BI GGWCC 2 cut(s) 77, 110
VspI ATTAAT 1 cut(s) 489
XbaI TCTAGA 1 cut(s) 478
XceI RCATGY 1 cut(s) 731
XhoI CTCGAG 1 cut(s) 837
XmnI GAANNNNTTC 1 cut(s) 463
XspI CTAG 5 cut(s) 44, 54, 326, 479, 816
Zsp2I ATGCAT 1 cut(s) 226
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.