Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0004674

Physical Location & Seq

Genomic Coordinates Forward (+)

27416623 .. 27419824

Gene Structure 3202 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G269400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGGTAGCACCAGTAGCAGTTGCAGTAGCGGCAACAACAGCGCTAGCCAAGCCTAGTTCGCTAACGTGCGCACTGGTTCCATCATGGCAAGGGCTTCGTGGAAGTCTGGGACCAGCTCGAAGCTTGCAATGGCCAAAGAAACAGCAGAGACAATGCAGAAGGAAAGCCGGTGGCACTAGTGTTACTGCCCAATTTGAGCTAAAGCCTCCTCCATATCCACTGGATGCACTGGAGCCGCACATGAGCAAGGAGACCTTAGAATATCACTGGGGGAAGCACCATAGGGGTTATGTGGATAACCTAAACAAGTTAATAGCAGGAACTGAACTAGATGAATTGTCATTGGAAGATATCATACTTGCTACATACAACAAGGGGGATCTTCTCCCGCCTTTCAACCATGCAGCACAGATCTGGAACCATGACTTCTTCTGGGAATCAATGAAACCAGGTGGTGGAGGAAAGCCATCAGGTGAACTTCTAGAATTAATTAATAGAGATTTTGGTTCTTTTGAGAGATTCATTGAAGAGTTAAGGTCAGCTGCGGCTACACAGTTTGGTTCTGGTTGGGCATGGCTTGCATATAAAGCAAATAGACTTGATGTTGGAAATGCAGTAAATCCTAAACCATCAGATGAAGACAAGAGGCTTGTAGTTGTGAAGAGTCCTAATGCTGTAAACCCCCTTATTTGGGATTATTCTCCGCTCCTTACTATTGATGTTTGGGAGCATGCTTACTACCTTGATTTTCAGAACCGACGGGCTGATTACATATCAATCTTTCTGGAGAAACTTGTATCGTGGGAAGCAGTCAGTTCTAGGCTTGAAATCGCAAAGGCTCGAGCTGCTGAAAGAGAGGAAGCAGAAGAAAGGAAGAAAAGAGAGGAAGAGGAGAAAACATCAGATGGCGAAGTTGAAGAGATTTATGTGGACAACAAGAGTGATGACTCAGAGACTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0000303 GO:0000305 GO:0003674 GO:0003824 GO:0004784 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006801 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009295 GO:0009314 GO:0009411 GO:0009416 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009636 GO:0009987 GO:0010035 GO:0016209 GO:0016491 GO:0016721 GO:0019430 GO:0033554 GO:0034599 GO:0034614 GO:0042221 GO:0042644 GO:0042646 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0071450 GO:0071451 GO:0072593 GO:0097237 GO:0098754 GO:0098869 GO:1901700 GO:1901701 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04013 ko04068 ko04146 ko04211 ko04212 ko04213 ko05016 map04013 map04068 map04146 map04211 map04212 map04213 map05016

Pfam Domains

Protein Families

Sod_Fe_C Sod_Fe_N

Protein Analysis

321

Amino Acids

36.07

Weight (kDa)

5.29

Isoelectric Point (pI)

47.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004674)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00651 AT4G25100 AT4G25100 AT4G25100 AT4G25100 AT4G25100 AT5G51100 AT5G51100 AT5G51100 AT5G51100 AT5G51100 AT5G51100
fragaria_vesca	FvH4_7g26501 FvH4_7g26501
malus_domestica	MD01G1173700.v1.1 MD07G1240700.v1.1
prunus_persica	Prupe.2G269400_v2.0.a1 Prupe.2G269400_v2.0.a1
pyrus_communis	pycom01g18560 pycom07g21700
rosa_chinensis	RchiOBHm_Chr1g0373101
rosa_laevigata	RLG00000026848
rosa_multiflora	Rmu_sc0002004.1_g000002
rosa_roxburghii	Rroxscaffold_4G00284450
rosa_rugosa	Rorug01G0376300 Rorug04G0079400
rosa_samantha	Rh1AG384700 Rh1BG348600 Rh1CG362000 Rh1DG379500
rosa_wichuraiana	Rw1G033930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	70
AccB7I	CCANNNNNTGG	1 cut(s)	455
AccBSI	CCGCTC	1 cut(s)	706
AciI	CCGC	5 cut(s)	29, 236, 389, 545, 704
AclWI	GGATC	1 cut(s)	387
AcoI	YGGCCR	1 cut(s)	131
AfeI	AGCGCT	1 cut(s)	42
AfiI	CCNNNNNNNGG	3 cut(s)	455, 690, 691
AgsI	TTSAA	4 cut(s)	397, 527, 827, 917
AhlI	ACTAGT	1 cut(s)	176
AjnI	CCWGG	1 cut(s)	448
AluBI	AGCT	5 cut(s)	116, 123, 199, 542, 845
AluI	AGCT	5 cut(s)	116, 123, 199, 542, 845
Alw26I	GTCTC	3 cut(s)	142, 245, 947
AlwI	GGATC	1 cut(s)	387
AlwNI	CAGNNNCTG	2 cut(s)	323, 956
Ama87I	CYCGRG	1 cut(s)	840
Aor51HI	AGCGCT	1 cut(s)	42
AoxI	GGCC	1 cut(s)	131
ApeKI	GCWGC	3 cut(s)	404, 542, 845
AseI	ATTAAT	2 cut(s)	488, 492
AspLEI	GCGC	2 cut(s)	43, 71
AspS9I	GGNCC	1 cut(s)	110
AsuHPI	GGTGA	1 cut(s)	485
AsuNHI	GCTAGC	1 cut(s)	43
AvaI	CYCGRG	1 cut(s)	840
AvaII	GGWCC	1 cut(s)	110
BalI	TGGCCA	1 cut(s)	133
BarI	GAAGNNNNNNTAC	2 cut(s)	339, 371
BbsI	GAAGAC	1 cut(s)	645
BbvI	GCAGC	3 cut(s)	416, 529, 832
BccI	CCATC	4 cut(s)	88, 475, 637, 899
BcgI	CGANNNNNNTGC	2 cut(s)	77, 111
BciT130I	CCWGG	1 cut(s)	450
BcoDI	GTCTC	3 cut(s)	142, 245, 947
BcuI	ACTAGT	1 cut(s)	176
BfaI	CTAG	6 cut(s)	44, 54, 177, 329, 482, 819
BfoI	RGCGCY	1 cut(s)	44
BglII	AGATCT	1 cut(s)	411
BisI	GCNGC	6 cut(s)	30, 236, 405, 543, 546, 846
BlsI	GCNGC	6 cut(s)	31, 237, 406, 544, 547, 847
Bme1390I	CCNGG	1 cut(s)	450
Bme18I	GGWCC	1 cut(s)	110
BmeT110I	CYCGRG	1 cut(s)	840
BmgT120I	GGNCC	1 cut(s)	110
BmiI	GGNNCC	4 cut(s)	78, 111, 234, 419
BmrFI	CCNGG	1 cut(s)	450
BmrI	ACTGGG	1 cut(s)	277
BmsI	GCATC	1 cut(s)	214
BmtI	GCTAGC	1 cut(s)	47
BmuI	ACTGGG	1 cut(s)	277
BpiI	GAAGAC	1 cut(s)	645
BpmI	CTGGAG	2 cut(s)	251, 806
BsaI	GGTCTC	1 cut(s)	245
Bsc4I	CCNNNNNNNGG	3 cut(s)	455, 690, 691
Bse118I	RCCGGY	1 cut(s)	167
Bse1I	ACTGG	5 cut(s)	11, 78, 225, 234, 272
Bse3DI	GCAATG	1 cut(s)	134
BseBI	CCWGG	1 cut(s)	450
BseGI	GGATG	1 cut(s)	229
BseLI	CCNNNNNNNGG	3 cut(s)	455, 690, 691
BseMI	GCAATG	1 cut(s)	134
BseMII	CTCAG	1 cut(s)	963
BseNI	ACTGG	5 cut(s)	11, 78, 225, 234, 272
BseRI	GAGGAG	2 cut(s)	198, 905
BseXI	GCAGC	3 cut(s)	416, 529, 832
BshFI	GGCC	1 cut(s)	133
BsiHKCI	CYCGRG	1 cut(s)	840
BsiSI	CCGG	1 cut(s)	168
BslFI	GGGAC	1 cut(s)	123
BslI	CCNNNNNNNGG	3 cut(s)	455, 690, 691
BsmAI	GTCTC	3 cut(s)	142, 245, 947
BsmFI	GGGAC	1 cut(s)	123
BsnI	GGCC	1 cut(s)	133
Bso31I	GGTCTC	1 cut(s)	245
BsoBI	CYCGRG	1 cut(s)	840
Bsp143I	GATC	2 cut(s)	379, 411
BspACI	CCGC	5 cut(s)	29, 236, 389, 545, 704
BspANI	GGCC	1 cut(s)	133
BspCNI	CTCAG	1 cut(s)	962
BspLI	GGNNCC	4 cut(s)	78, 111, 234, 419
BspOI	GCTAGC	1 cut(s)	47
BspPI	GGATC	1 cut(s)	387
BspTNI	GGTCTC	1 cut(s)	245
BsrBI	CCGCTC	1 cut(s)	706
BsrDI	GCAATG	1 cut(s)	134
BsrFI	RCCGGY	1 cut(s)	167
BsrI	ACTGG	5 cut(s)	11, 78, 225, 234, 272
BssAI	RCCGGY	1 cut(s)	167
BssMI	GATC	2 cut(s)	379, 411
Bst2UI	CCWGG	1 cut(s)	450
Bst4CI	ACNGT	1 cut(s)	555
Bst6I	CTCTTC	4 cut(s)	522, 656, 882, 912
BstAPI	GCANNNNNTGC	1 cut(s)	578
BstC8I	GCNNGC	4 cut(s)	45, 125, 579, 732
BstDEI	CTNAG	2 cut(s)	256, 949
BstF5I	GGATG	1 cut(s)	229
BstH2I	RGCGCY	1 cut(s)	44
BstHHI	GCGC	2 cut(s)	43, 71
BstKTI	GATC	2 cut(s)	382, 414
BstMAI	GTCTC	3 cut(s)	142, 245, 947
BstMBI	GATC	2 cut(s)	379, 411
BstMWI	GCNNNNNNNGC	8 cut(s)	14, 29, 38, 49, 58, 578, 587, 845
BstNI	CCWGG	1 cut(s)	450
BstNSI	RCATGY	1 cut(s)	734
BstSCI	CCNGG	1 cut(s)	448
BstV1I	GCAGC	3 cut(s)	416, 529, 832
BstV2I	GAAGAC	1 cut(s)	645
BstX2I	RGATCY	2 cut(s)	379, 411
BstYI	RGATCY	2 cut(s)	379, 411
BsuRI	GGCC	1 cut(s)	133
BtsCI	GGATG	1 cut(s)	229
BtsIMutI	CAGTG	4 cut(s)	71, 218, 227, 265
Cac8I	GCNNGC	4 cut(s)	45, 125, 579, 732
CaiI	CAGNNNCTG	2 cut(s)	323, 956
CfoI	GCGC	2 cut(s)	43, 71
Cfr10I	RCCGGY	1 cut(s)	167
Cfr13I	GGNCC	1 cut(s)	110
CsiI	ACCWGGT	1 cut(s)	448
CviAII	CATG	6 cut(s)	84, 241, 401, 422, 573, 731
DdeI	CTNAG	2 cut(s)	256, 949
DpnI	GATC	2 cut(s)	381, 413
DpnII	GATC	2 cut(s)	379, 411
EaeI	YGGCCR	1 cut(s)	131
Eam1104I	CTCTTC	4 cut(s)	522, 656, 882, 912
EarI	CTCTTC	4 cut(s)	522, 656, 882, 912
Eco31I	GGTCTC	1 cut(s)	245
Eco32I	GATATC	1 cut(s)	352
Eco47I	GGWCC	1 cut(s)	110
Eco47III	AGCGCT	1 cut(s)	42
Eco88I	CYCGRG	1 cut(s)	840
EcoRII	CCWGG	1 cut(s)	448
EcoRV	GATATC	1 cut(s)	352
FaeI	CATG	6 cut(s)	87, 244, 404, 425, 576, 734
FalI	AAGNNNNNCTT	2 cut(s)	239, 271
FaqI	GGGAC	1 cut(s)	123
FatI	CATG	6 cut(s)	83, 240, 400, 421, 572, 730
FauI	CCCGC	1 cut(s)	396
Fnu4HI	GCNGC	6 cut(s)	30, 236, 405, 543, 546, 846
FokI	GGATG	1 cut(s)	236
Fsp4HI	GCNGC	6 cut(s)	30, 236, 405, 543, 546, 846
FspAI	RTGCGCAY	1 cut(s)	70
FspBI	CTAG	6 cut(s)	44, 54, 177, 329, 482, 819
FspI	TGCGCA	1 cut(s)	70
GlaI	GCGC	2 cut(s)	42, 70
GluI	GCNGC	6 cut(s)	30, 236, 405, 543, 546, 846
GsuI	CTGGAG	2 cut(s)	251, 806
HaeII	RGCGCY	1 cut(s)	44
HaeIII	GGCC	1 cut(s)	133
HapII	CCGG	1 cut(s)	168
HhaI	GCGC	2 cut(s)	43, 71
Hin1II	CATG	6 cut(s)	87, 244, 404, 425, 576, 734
Hin6I	GCGC	2 cut(s)	41, 69
HinP1I	GCGC	2 cut(s)	41, 69
HindIII	AAGCTT	1 cut(s)	121
HinfI	GANTC	4 cut(s)	437, 519, 664, 947
HpaII	CCGG	1 cut(s)	168
HphI	GGTGA	1 cut(s)	485
Hpy166II	GTNNAC	3 cut(s)	476, 679, 931
Hpy188I	TCNGA	4 cut(s)	634, 753, 904, 952
Hpy188III	TCNNGA	3 cut(s)	415, 482, 785
Hpy8I	GTNNAC	3 cut(s)	476, 679, 931
Hpy99I	CGWCG	1 cut(s)	762
HpyAV	CCTTC	1 cut(s)	153
HpyCH4III	ACNGT	1 cut(s)	555
HpyCH4IV	ACGT	1 cut(s)	65
HpyCH4V	TGCA	7 cut(s)	23, 127, 156, 227, 404, 581, 614
HpyF10VI	GCNNNNNNNGC	8 cut(s)	14, 29, 38, 49, 58, 578, 587, 845
HpyF3I	CTNAG	2 cut(s)	256, 949
HpySE526I	ACGT	1 cut(s)	65
Hsp92II	CATG	6 cut(s)	87, 244, 404, 425, 576, 734
HspAI	GCGC	2 cut(s)	41, 69
Kzo9I	GATC	2 cut(s)	379, 411
LmnI	GCTCC	3 cut(s)	232, 711, 727
Lsp1109I	GCAGC	3 cut(s)	416, 529, 832
LweI	GCATC	1 cut(s)	214
MabI	ACCWGGT	1 cut(s)	448
MaeI	CTAG	6 cut(s)	44, 54, 177, 329, 482, 819
MaeII	ACGT	1 cut(s)	65
MaeIII	GTNAC	1 cut(s)	181
MalI	GATC	2 cut(s)	381, 413
MbiI	CCGCTC	1 cut(s)	706
MboI	GATC	2 cut(s)	379, 411
MflI	RGATCY	2 cut(s)	379, 411
MlsI	TGGCCA	1 cut(s)	133
MluCI	AATT	4 cut(s)	191, 335, 485, 489
MluNI	TGGCCA	1 cut(s)	133
MlyI	GAGTC	2 cut(s)	673, 941
MmeI	TCCRAC	1 cut(s)	586
MnlI	CCTC	7 cut(s)	216, 219, 452, 639, 850, 877, 883
Mox20I	TGGCCA	1 cut(s)	133
MscI	TGGCCA	1 cut(s)	133
MseI	TTAA	4 cut(s)	311, 488, 492, 533
Msp20I	TGGCCA	1 cut(s)	133
MspA1I	CMGCKG	1 cut(s)	542
MspI	CCGG	1 cut(s)	168
MspR9I	CCNGG	1 cut(s)	450
MvaI	CCWGG	1 cut(s)	450
MwoI	GCNNNNNNNGC	8 cut(s)	14, 29, 38, 49, 58, 578, 587, 845
NdeII	GATC	2 cut(s)	379, 411
NheI	GCTAGC	1 cut(s)	43
NlaIII	CATG	6 cut(s)	87, 244, 404, 425, 576, 734
NlaIV	GGNNCC	4 cut(s)	78, 111, 234, 419
NsbI	TGCGCA	1 cut(s)	70
NspI	RCATGY	1 cut(s)	734
PacI	TTAATTAA	1 cut(s)	492
PaeI	GCATGC	1 cut(s)	734
PaeR7I	CTCGAG	1 cut(s)	840
PfeI	GAWTC	2 cut(s)	437, 519
PflMI	CCANNNNNTGG	1 cut(s)	455
PkrI	GCNGC	6 cut(s)	31, 237, 406, 544, 547, 847
PleI	GAGTC	2 cut(s)	672, 941
PpsI	GAGTC	2 cut(s)	672, 941
PshBI	ATTAAT	2 cut(s)	488, 492
Psp6I	CCWGG	1 cut(s)	448
PspGI	CCWGG	1 cut(s)	448
PspN4I	GGNNCC	4 cut(s)	78, 111, 234, 419
PspPI	GGNCC	1 cut(s)	110
PspXI	VCTCGAGB	1 cut(s)	840
PstNI	CAGNNNCTG	2 cut(s)	323, 956
PsuI	RGATCY	2 cut(s)	379, 411
PvuII	CAGCTG	1 cut(s)	542
SaqAI	TTAA	4 cut(s)	311, 488, 492, 533
SatI	GCNGC	6 cut(s)	30, 236, 405, 543, 546, 846
Sau3AI	GATC	2 cut(s)	379, 411
Sau96I	GGNCC	1 cut(s)	110
SchI	GAGTC	2 cut(s)	673, 941
ScrFI	CCNGG	1 cut(s)	450
SexAI	ACCWGGT	1 cut(s)	448
SfaNI	GCATC	1 cut(s)	214
Sfr274I	CTCGAG	1 cut(s)	840
SinI	GGWCC	1 cut(s)	110
SlaI	CTCGAG	1 cut(s)	840
SmlI	CTYRAG	1 cut(s)	840
SmoI	CTYRAG	1 cut(s)	840
SpeI	ACTAGT	1 cut(s)	176
SphI	GCATGC	1 cut(s)	734
Sse9I	AATT	4 cut(s)	191, 335, 485, 489
SsiI	CCGC	5 cut(s)	29, 236, 389, 545, 704
SspMI	CTAG	6 cut(s)	44, 54, 177, 329, 482, 819
StyD4I	CCNGG	1 cut(s)	448
TaaI	ACNGT	1 cut(s)	555
TaiI	ACGT	1 cut(s)	68
TaqI	TCGA	2 cut(s)	118, 841
TasI	AATT	4 cut(s)	191, 335, 485, 489
TauI	GCSGC	3 cut(s)	32, 238, 548
TfiI	GAWTC	2 cut(s)	437, 519
Tru1I	TTAA	4 cut(s)	311, 488, 492, 533
Tru9I	TTAA	4 cut(s)	311, 488, 492, 533
TscAI	CASTG	4 cut(s)	78, 225, 234, 272
TseI	GCWGC	3 cut(s)	404, 542, 845
TspDTI	ATGAA	4 cut(s)	348, 458, 511, 651
TspRI	CASTG	4 cut(s)	78, 225, 234, 272
Van91I	CCANNNNNTGG	1 cut(s)	455
VpaK11BI	GGWCC	1 cut(s)	110
VspI	ATTAAT	2 cut(s)	488, 492
XbaI	TCTAGA	1 cut(s)	481
XceI	RCATGY	1 cut(s)	734
XhoI	CTCGAG	1 cut(s)	840
XspI	CTAG	6 cut(s)	44, 54, 177, 329, 482, 819

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.