Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0004674

Physical Location & Seq

Genomic Coordinates Reverse (-)

6505097 .. 6507058

Gene Structure 1962 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000026848

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGGTAATACCAGCAGCAACAACAACACCACCTTTCGCTGCGCCAAATTCGGTATCTTGCGCACTGGGCCCACCATGGAAAGGCCTCACTGGAAGTCTGGGATCACCTTCAAGCTTGCAATGGCTAAAGAAACAGAGACAATGCAAAAGGAAAGCTGGAACAAGTAGTATCTGTGCTAATTTTGTACTAAAGCCTCCTCCATATCCACTGGATGCGCTGGAGCCGCATATGAGCAAGGAGACTCTGGAGTATCACTGGGGGAAGCACCATAGGGGTTATGTGGATAACCTAAACAAGCAAATTGAAGGAACTGAGCTAGATGAATTGTCATTGGAAGATATTATACTTGCTACACACAACAACGGAGATTTGCTTCCACCTTTCAACAATGCAGCACAGATCTGGAACCATGACTTTTTCTGGGAGTCCATGAAACCAGGTGGTGGAGGAAGGCCATCCGGGGAACTTCTAGAACTAATTAATAGAGATTTTGGTTCTTTTGAGAGATTCGTTGATGATATAAGGTTGGCTGCGGCTACACAGTTTGGTTCTGGTTGGGCTTGGCTTGCATATAAAGCAAATAGACTTGATGTTGAAAATGCAGTAAATCCTAATCCAACGGACGAAGACAAAAGGCTTGTAGTGGTGAAGAGTCCTAATGCAGTAAACCCCCTTATATGGGATTATTCTCCGCTCCTTACCATCGATGTTTGGGAGCATGCTTACTACCTCGATGTTCAGAACCGGCGAGCTGATTACATATCAATCTTTTTGGAGAAACTTGTTTCATGGGAAGCAGTCAGTTCTAGACTTGAAATTGCAAAGGCTCGAGCGGTTGAAAGAGAGGAAGAAGAAGAAAAGAGGAAAAGAGAAGAAGAGGAGAAATCATCAGATGGCGAAGTTGCAGAGATTTATGTGGACAACAAGAGCGATGACTCGGAGGCTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0000303 GO:0000305 GO:0003674 GO:0003824 GO:0004784 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006801 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009295 GO:0009314 GO:0009411 GO:0009416 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009636 GO:0009987 GO:0010035 GO:0016209 GO:0016491 GO:0016721 GO:0019430 GO:0033554 GO:0034599 GO:0034614 GO:0042221 GO:0042644 GO:0042646 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0071450 GO:0071451 GO:0072593 GO:0097237 GO:0098754 GO:0098869 GO:1901700 GO:1901701 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04013 ko04068 ko04146 ko04211 ko04212 ko04213 ko05016 map04013 map04068 map04146 map04211 map04212 map04213 map05016

Pfam Domains

Protein Families

Sod_Fe_C Sod_Fe_N

Protein Analysis

317

Amino Acids

35.62

Weight (kDa)

4.97

Isoelectric Point (pI)

48.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sod_Fe_N	PF00081	61 - 144	1.7e-24	Iron/manganese superoxide dismutases, alpha-hairpin domain
Sod_Fe_C	PF02777	152 - 203	2.2e-10	Iron/manganese superoxide dismutases, C-terminal domain
Sod_Fe_C	PF02777	208 - 270	7.4e-18	Iron/manganese superoxide dismutases, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004674)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00651 AT4G25100 AT4G25100 AT4G25100 AT4G25100 AT4G25100 AT5G51100 AT5G51100 AT5G51100 AT5G51100 AT5G51100 AT5G51100
fragaria_vesca	FvH4_7g26501 FvH4_7g26501
malus_domestica	MD01G1173700.v1.1 MD07G1240700.v1.1
prunus_persica	Prupe.2G269400_v2.0.a1 Prupe.2G269400_v2.0.a1
pyrus_communis	pycom01g18560 pycom07g21700
rosa_chinensis	RchiOBHm_Chr1g0373101
rosa_laevigata	RLG00000026848
rosa_multiflora	Rmu_sc0002004.1_g000002
rosa_roxburghii	Rroxscaffold_4G00284450
rosa_rugosa	Rorug01G0376300 Rorug04G0079400
rosa_samantha	Rh1AG384700 Rh1BG348600 Rh1CG362000 Rh1DG379500
rosa_wichuraiana	Rw1G033930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	61
AccB7I	CCANNNNNTGG	1 cut(s)	443
AccBSI	CCGCTC	2 cut(s)	694, 833
AciI	CCGC	4 cut(s)	224, 533, 692, 833
AclWI	GGATC	1 cut(s)	109
AcsI	RAATTY	1 cut(s)	46
AfaI	GTAC	1 cut(s)	186
AfiI	CCNNNNNNNGG	4 cut(s)	80, 443, 678, 679
AgsI	TTSAA	6 cut(s)	111, 305, 385, 596, 815, 839
AjnI	CCWGG	1 cut(s)	436
AluBI	AGCT	4 cut(s)	114, 155, 316, 752
AluI	AGCT	4 cut(s)	114, 155, 316, 752
Alw26I	GTCTC	2 cut(s)	130, 233
AlwI	GGATC	1 cut(s)	109
Ama87I	CYCGRG	1 cut(s)	828
AoxI	GGCC	3 cut(s)	67, 82, 452
ApaI	GGGCCC	1 cut(s)	71
ApeKI	GCWGC	4 cut(s)	14, 38, 392, 530
ApoI	RAATTY	1 cut(s)	46
AseI	ATTAAT	1 cut(s)	480
AspLEI	GCGC	3 cut(s)	43, 62, 217
AspS9I	GGNCC	2 cut(s)	67, 68
AsuC2I	CCSGG	1 cut(s)	460
AsuHPI	GGTGA	2 cut(s)	96, 658
AvaI	CYCGRG	1 cut(s)	828
BaeGI	GKGCMC	1 cut(s)	71
BanII	GRGCYC	1 cut(s)	71
BarI	GAAGNNNNNNTAC	2 cut(s)	327, 359
BbsI	GAAGAC	1 cut(s)	633
BbvI	GCAGC	4 cut(s)	25, 26, 404, 517
BccI	CCATC	3 cut(s)	463, 710, 887
BciT130I	CCWGG	1 cut(s)	438
BcnI	CCSGG	1 cut(s)	460
BcoDI	GTCTC	2 cut(s)	130, 233
BfaI	CTAG	3 cut(s)	317, 470, 807
BglII	AGATCT	1 cut(s)	399
BisI	GCNGC	6 cut(s)	15, 39, 224, 393, 531, 534
BlsI	GCNGC	6 cut(s)	16, 40, 225, 394, 532, 535
Bme1390I	CCNGG	2 cut(s)	438, 460
BmeT110I	CYCGRG	1 cut(s)	828
BmgT120I	GGNCC	2 cut(s)	67, 68
BmiI	GGNNCC	3 cut(s)	69, 222, 407
BmrFI	CCNGG	2 cut(s)	438, 460
BmrI	ACTGGG	2 cut(s)	74, 265
BmsI	GCATC	1 cut(s)	202
BmuI	ACTGGG	2 cut(s)	74, 265
BpiI	GAAGAC	1 cut(s)	633
BpmI	CTGGAG	2 cut(s)	239, 266
BpuMI	CCSGG	1 cut(s)	460
Bsa29I	ATCGAT	1 cut(s)	705
BsaJI	CCNNGG	2 cut(s)	74, 459
Bsc4I	CCNNNNNNNGG	4 cut(s)	80, 443, 678, 679
Bse118I	RCCGGY	1 cut(s)	744
Bse1I	ACTGG	4 cut(s)	69, 94, 213, 260
Bse3DI	GCAATG	1 cut(s)	125
BseBI	CCWGG	1 cut(s)	438
BseCI	ATCGAT	1 cut(s)	705
BseDI	CCNNGG	2 cut(s)	74, 459
BseGI	GGATG	2 cut(s)	217, 455
BseLI	CCNNNNNNNGG	4 cut(s)	80, 443, 678, 679
BseMI	GCAATG	1 cut(s)	125
BseMII	CTCAG	1 cut(s)	303
BseNI	ACTGG	4 cut(s)	69, 94, 213, 260
BseRI	GAGGAG	2 cut(s)	186, 893
BseSI	GKGCMC	1 cut(s)	71
BseXI	GCAGC	4 cut(s)	25, 26, 404, 517
BshFI	GGCC	3 cut(s)	69, 84, 454
BshVI	ATCGAT	1 cut(s)	705
BsiHKCI	CYCGRG	1 cut(s)	828
BsiSI	CCGG	2 cut(s)	459, 745
BslI	CCNNNNNNNGG	4 cut(s)	80, 443, 678, 679
BsmAI	GTCTC	2 cut(s)	130, 233
BsnI	GGCC	3 cut(s)	69, 84, 454
BsoBI	CYCGRG	1 cut(s)	828
Bsp120I	GGGCCC	1 cut(s)	67
Bsp1286I	GDGCHC	1 cut(s)	71
Bsp143I	GATC	2 cut(s)	101, 399
Bsp19I	CCATGG	1 cut(s)	74
BspACI	CCGC	4 cut(s)	224, 533, 692, 833
BspANI	GGCC	3 cut(s)	69, 84, 454
BspCNI	CTCAG	1 cut(s)	304
BspDI	ATCGAT	1 cut(s)	705
BspLI	GGNNCC	3 cut(s)	69, 222, 407
BspPI	GGATC	1 cut(s)	109
BsrBI	CCGCTC	2 cut(s)	694, 833
BsrDI	GCAATG	1 cut(s)	125
BsrFI	RCCGGY	1 cut(s)	744
BsrI	ACTGG	4 cut(s)	69, 94, 213, 260
BssAI	RCCGGY	1 cut(s)	744
BssECI	CCNNGG	2 cut(s)	74, 459
BssMI	GATC	2 cut(s)	101, 399
BssT1I	CCWWGG	1 cut(s)	74
Bst2UI	CCWGG	1 cut(s)	438
Bst4CI	ACNGT	1 cut(s)	543
Bst6I	CTCTTC	2 cut(s)	644, 870
BstC8I	GCNNGC	4 cut(s)	116, 567, 720, 750
BstDEI	CTNAG	1 cut(s)	312
BstDSI	CCRYGG	1 cut(s)	74
BstF5I	GGATG	2 cut(s)	217, 455
BstHHI	GCGC	3 cut(s)	43, 62, 217
BstKTI	GATC	2 cut(s)	104, 402
BstMAI	GTCTC	2 cut(s)	130, 233
BstMBI	GATC	2 cut(s)	101, 399
BstMWI	GCNNNNNNNGC	4 cut(s)	66, 223, 566, 575
BstNI	CCWGG	1 cut(s)	438
BstNSI	RCATGY	1 cut(s)	722
BstSCI	CCNGG	2 cut(s)	436, 458
BstSLI	GKGCMC	1 cut(s)	71
BstV1I	GCAGC	4 cut(s)	25, 26, 404, 517
BstV2I	GAAGAC	1 cut(s)	633
BstX2I	RGATCY	1 cut(s)	399
BstYI	RGATCY	1 cut(s)	399
Bsu15I	ATCGAT	1 cut(s)	705
BsuRI	GGCC	3 cut(s)	69, 84, 454
BsuTUI	ATCGAT	1 cut(s)	705
BtgI	CCRYGG	1 cut(s)	74
BtgZI	GCGATG	1 cut(s)	945
BtsCI	GGATG	2 cut(s)	217, 455
BtsIMutI	CAGTG	4 cut(s)	62, 87, 206, 253
Cac8I	GCNNGC	4 cut(s)	116, 567, 720, 750
CfoI	GCGC	3 cut(s)	43, 62, 217
Cfr10I	RCCGGY	1 cut(s)	744
Cfr13I	GGNCC	2 cut(s)	67, 68
ClaI	ATCGAT	1 cut(s)	705
CsiI	ACCWGGT	1 cut(s)	436
Csp6I	GTAC	1 cut(s)	185
CviAII	CATG	5 cut(s)	75, 410, 430, 719, 789
CviQI	GTAC	1 cut(s)	185
DdeI	CTNAG	1 cut(s)	312
DpnI	GATC	2 cut(s)	103, 401
DpnII	GATC	2 cut(s)	101, 399
Eam1104I	CTCTTC	2 cut(s)	644, 870
EarI	CTCTTC	2 cut(s)	644, 870
Eco130I	CCWWGG	1 cut(s)	74
Eco147I	AGGCCT	1 cut(s)	84
Eco24I	GRGCYC	1 cut(s)	71
Eco88I	CYCGRG	1 cut(s)	828
EcoRII	CCWGG	1 cut(s)	436
EcoT14I	CCWWGG	1 cut(s)	74
EcoT38I	GRGCYC	1 cut(s)	71
ErhI	CCWWGG	1 cut(s)	74
FaeI	CATG	5 cut(s)	78, 413, 433, 722, 792
FatI	CATG	5 cut(s)	74, 409, 429, 718, 788
FauNDI	CATATG	1 cut(s)	228
Fnu4HI	GCNGC	6 cut(s)	15, 39, 224, 393, 531, 534
FokI	GGATG	2 cut(s)	224, 442
FriOI	GRGCYC	1 cut(s)	71
Fsp4HI	GCNGC	6 cut(s)	15, 39, 224, 393, 531, 534
FspBI	CTAG	3 cut(s)	317, 470, 807
FspI	TGCGCA	1 cut(s)	61
GlaI	GCGC	3 cut(s)	42, 61, 216
GluI	GCNGC	6 cut(s)	15, 39, 224, 393, 531, 534
GsuI	CTGGAG	2 cut(s)	239, 266
HaeIII	GGCC	3 cut(s)	69, 84, 454
HapII	CCGG	2 cut(s)	459, 745
HhaI	GCGC	3 cut(s)	43, 62, 217
Hin1II	CATG	5 cut(s)	78, 413, 433, 722, 792
Hin6I	GCGC	3 cut(s)	41, 60, 215
HinP1I	GCGC	3 cut(s)	41, 60, 215
HindIII	AAGCTT	1 cut(s)	112
HinfI	GANTC	5 cut(s)	241, 425, 507, 652, 935
HpaII	CCGG	2 cut(s)	459, 745
HphI	GGTGA	2 cut(s)	96, 658
Hpy166II	GTNNAC	2 cut(s)	667, 919
Hpy188I	TCNGA	3 cut(s)	741, 892, 940
Hpy188III	TCNNGA	4 cut(s)	245, 403, 470, 807
Hpy8I	GTNNAC	2 cut(s)	667, 919
HpyAV	CCTTC	3 cut(s)	117, 299, 444
HpyCH4III	ACNGT	1 cut(s)	543
HpyCH4V	TGCA	8 cut(s)	118, 144, 392, 569, 602, 662, 821, 905
HpyF10VI	GCNNNNNNNGC	4 cut(s)	66, 223, 566, 575
HpyF3I	CTNAG	1 cut(s)	312
Hsp92II	CATG	5 cut(s)	78, 413, 433, 722, 792
HspAI	GCGC	3 cut(s)	41, 60, 215
Kzo9I	GATC	2 cut(s)	101, 399
LmnI	GCTCC	3 cut(s)	220, 699, 715
Lsp1109I	GCAGC	4 cut(s)	25, 26, 404, 517
LweI	GCATC	1 cut(s)	202
MabI	ACCWGGT	1 cut(s)	436
MaeI	CTAG	3 cut(s)	317, 470, 807
MalI	GATC	2 cut(s)	103, 401
MbiI	CCGCTC	2 cut(s)	694, 833
MboI	GATC	2 cut(s)	101, 399
MboII	GAAGA	8 cut(s)	347, 638, 661, 860, 863, 866, 884, 887
MflI	RGATCY	1 cut(s)	399
MhlI	GDGCHC	1 cut(s)	71
MluCI	AATT	6 cut(s)	46, 178, 300, 323, 477, 816
MlyI	GAGTC	4 cut(s)	235, 434, 661, 929
MmeI	TCCRAC	1 cut(s)	641
MnlI	CCTC	9 cut(s)	95, 204, 207, 440, 740, 838, 855, 871, 934
MseI	TTAA	1 cut(s)	480
MspI	CCGG	2 cut(s)	459, 745
MspR9I	CCNGG	2 cut(s)	438, 460
MvaI	CCWGG	1 cut(s)	438
MwoI	GCNNNNNNNGC	4 cut(s)	66, 223, 566, 575
NciI	CCSGG	1 cut(s)	460
NcoI	CCATGG	1 cut(s)	74
NdeI	CATATG	1 cut(s)	228
NdeII	GATC	2 cut(s)	101, 399
NlaIII	CATG	5 cut(s)	78, 413, 433, 722, 792
NlaIV	GGNNCC	3 cut(s)	69, 222, 407
NsbI	TGCGCA	1 cut(s)	61
NspI	RCATGY	1 cut(s)	722
PaeI	GCATGC	1 cut(s)	722
PaeR7I	CTCGAG	1 cut(s)	828
PceI	AGGCCT	1 cut(s)	84
PfeI	GAWTC	1 cut(s)	507
PflMI	CCANNNNNTGG	1 cut(s)	443
PkrI	GCNGC	6 cut(s)	16, 40, 225, 394, 532, 535
PleI	GAGTC	4 cut(s)	235, 433, 660, 929
PpsI	GAGTC	4 cut(s)	235, 433, 660, 929
PshBI	ATTAAT	1 cut(s)	480
Psp6I	CCWGG	1 cut(s)	436
PspGI	CCWGG	1 cut(s)	436
PspN4I	GGNNCC	3 cut(s)	69, 222, 407
PspOMI	GGGCCC	1 cut(s)	67
PspPI	GGNCC	2 cut(s)	67, 68
PspXI	VCTCGAGB	1 cut(s)	828
PsuI	RGATCY	1 cut(s)	399
RsaI	GTAC	1 cut(s)	186
RsaNI	GTAC	1 cut(s)	185
SaqAI	TTAA	1 cut(s)	480
SatI	GCNGC	6 cut(s)	15, 39, 224, 393, 531, 534
Sau3AI	GATC	2 cut(s)	101, 399
Sau96I	GGNCC	2 cut(s)	67, 68
SchI	GAGTC	4 cut(s)	235, 434, 661, 929
ScrFI	CCNGG	2 cut(s)	438, 460
SduI	GDGCHC	1 cut(s)	71
SexAI	ACCWGGT	1 cut(s)	436
SfaNI	GCATC	1 cut(s)	202
Sfr274I	CTCGAG	1 cut(s)	828
SlaI	CTCGAG	1 cut(s)	828
SmlI	CTYRAG	1 cut(s)	828
SmoI	CTYRAG	1 cut(s)	828
SphI	GCATGC	1 cut(s)	722
Sse9I	AATT	6 cut(s)	46, 178, 300, 323, 477, 816
SseBI	AGGCCT	1 cut(s)	84
SsiI	CCGC	4 cut(s)	224, 533, 692, 833
SspMI	CTAG	3 cut(s)	317, 470, 807
StuI	AGGCCT	1 cut(s)	84
StyD4I	CCNGG	2 cut(s)	436, 458
StyI	CCWWGG	1 cut(s)	74
TaaI	ACNGT	1 cut(s)	543
TaqI	TCGA	3 cut(s)	705, 732, 829
TasI	AATT	6 cut(s)	46, 178, 300, 323, 477, 816
TatI	WGTACW	1 cut(s)	184
TauI	GCSGC	2 cut(s)	226, 536
TfiI	GAWTC	1 cut(s)	507
Tru1I	TTAA	1 cut(s)	480
Tru9I	TTAA	1 cut(s)	480
TscAI	CASTG	4 cut(s)	69, 94, 213, 260
TseI	GCWGC	4 cut(s)	14, 38, 392, 530
TspDTI	ATGAA	3 cut(s)	336, 446, 777
TspGWI	ACGGA	2 cut(s)	378, 635
TspRI	CASTG	4 cut(s)	69, 94, 213, 260
Van91I	CCANNNNNTGG	1 cut(s)	443
VspI	ATTAAT	1 cut(s)	480
XapI	RAATTY	1 cut(s)	46
XbaI	TCTAGA	2 cut(s)	469, 806
XceI	RCATGY	1 cut(s)	722
XhoI	CTCGAG	1 cut(s)	828
XspI	CTAG	3 cut(s)	317, 470, 807

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.