Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0004674

Physical Location & Seq

Genomic Coordinates Forward (+)

19996048 .. 19998070

Gene Structure 2023 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g26501.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGGTAACATTAGCAGTACCAGTAGCAACAACAGCACTTTTCTCTGCGCCAAATTCGCTAACTTGCTTACTGGGCCCACCATGGAAAGGCCTCAGTGGAAGTCTGGCATCACCTTCAACCTTGCAAAGGTCAAAGAAACAGAGACAATGCAAAAGGAAAGCTGGTCCAAGTAGTATATGTGCCAAATTTGAGCTGAAGCCTCCTCCATACCCACTGGATGCGCTGGAGCCGTATATGAGCAAGGAGACTCTGGAATATCACTGGGGGAAGCACCATAGGGGTTATGTGGATAACCTAAACAAGCAAATCGAAGGAACTGAGCTAGATGAATTGTCGTTGGAAGATGTTATACTTGCCACACACAATAAGGGAGATTTGCTTCCACCTTTCAACAATGCAGCACAGATCTGGAACCATGACTTCTTCTGGGAGTCAATGAAACCAGGTGGTGGAGGAAGGCCATCCGGGGAACTTCTAGAACTAATTAATAGAGATTTTGGTTCTTTTGAGAAATTCATTGATGATATAAGGCTGGCTGCGGCTACACAGTTTGGTTCTGGTTGGGCTTGGCTTGCATATAAAGCGAACAGACTTGATGTTGAAAATGCAGTCAATCCTAATCCATTGGATGAAGACAAAAGGCTTGTAGTGGTGAAGAGTCCTAATGCAATGAACCCCCTTATATGGGATTATTCTCCGCTCCTTACCATCGATGTTTGGGAGCATGCTTACTACCTCGATGTTCAGAATAAACGAGCTGATTACATAACAACCTTTTTGGAGAAACTTGTTTCATGGGAAGCAGTCAGTTATAGACTTGAAAGTGCAAAGGCTCGAGCAGTTGAAAGAGAGGAAGAAGAAGAAAGAAGGAAAAGAGAAGAAGAGGAGAAATCATCAGATGGCGAAGTTGAAGAGATTTATGTGGACAACAAGAGTGATGACTCGGAGGCTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0000303 GO:0000305 GO:0003674 GO:0003824 GO:0004784 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006801 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009295 GO:0009314 GO:0009411 GO:0009416 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009636 GO:0009987 GO:0010035 GO:0016209 GO:0016491 GO:0016721 GO:0019430 GO:0033554 GO:0034599 GO:0034614 GO:0042221 GO:0042644 GO:0042646 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0071450 GO:0071451 GO:0072593 GO:0097237 GO:0098754 GO:0098869 GO:1901700 GO:1901701 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04013 ko04068 ko04146 ko04211 ko04212 ko04213 ko05016 map04013 map04068 map04146 map04211 map04212 map04213 map05016

Pfam Domains

Protein Families

Sod_Fe_C Sod_Fe_N

Protein Analysis

319

Amino Acids

36.06

Weight (kDa)

5.0

Isoelectric Point (pI)

52.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sod_Fe_N	PF00081	62 - 147	5.6e-25	Iron/manganese superoxide dismutases, alpha-hairpin domain
Sod_Fe_C	PF02777	154 - 205	8.5e-11	Iron/manganese superoxide dismutases, C-terminal domain
Sod_Fe_C	PF02777	210 - 249	5.9e-10	Iron/manganese superoxide dismutases, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004674)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00651 AT4G25100 AT4G25100 AT4G25100 AT4G25100 AT4G25100 AT5G51100 AT5G51100 AT5G51100 AT5G51100 AT5G51100 AT5G51100
fragaria_vesca	FvH4_7g26501 FvH4_7g26501
malus_domestica	MD01G1173700.v1.1 MD07G1240700.v1.1
prunus_persica	Prupe.2G269400_v2.0.a1 Prupe.2G269400_v2.0.a1
pyrus_communis	pycom01g18560 pycom07g21700
rosa_chinensis	RchiOBHm_Chr1g0373101
rosa_laevigata	RLG00000026848
rosa_multiflora	Rmu_sc0002004.1_g000002
rosa_roxburghii	Rroxscaffold_4G00284450
rosa_rugosa	Rorug01G0376300 Rorug04G0079400
rosa_samantha	Rh1AG384700 Rh1BG348600 Rh1CG362000 Rh1DG379500
rosa_wichuraiana	Rw1G033930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	449
AccBSI	CCGCTC	1 cut(s)	700
AciI	CCGC	2 cut(s)	539, 698
AcsI	RAATTY	3 cut(s)	52, 185, 512
AcuI	CTGAAG	1 cut(s)	215
AfaI	GTAC	1 cut(s)	18
AfiI	CCNNNNNNNGG	5 cut(s)	86, 126, 449, 684, 685
AgsI	TTSAA	6 cut(s)	117, 391, 602, 821, 845, 911
AjnI	CCWGG	1 cut(s)	442
AluBI	AGCT	4 cut(s)	161, 193, 322, 758
AluI	AGCT	4 cut(s)	161, 193, 322, 758
Alw26I	GTCTC	2 cut(s)	136, 239
Ama87I	CYCGRG	1 cut(s)	834
AoxI	GGCC	3 cut(s)	73, 88, 458
ApaI	GGGCCC	1 cut(s)	77
ApeKI	GCWGC	2 cut(s)	398, 536
ApoI	RAATTY	3 cut(s)	52, 185, 512
AseI	ATTAAT	1 cut(s)	486
AspLEI	GCGC	2 cut(s)	49, 223
AspS9I	GGNCC	3 cut(s)	73, 74, 164
AsuC2I	CCSGG	1 cut(s)	466
AsuHPI	GGTGA	2 cut(s)	102, 664
AvaI	CYCGRG	1 cut(s)	834
AvaII	GGWCC	1 cut(s)	164
BaeGI	GKGCMC	1 cut(s)	77
BanII	GRGCYC	1 cut(s)	77
BarI	GAAGNNNNNNTAC	2 cut(s)	333, 365
BbsI	GAAGAC	1 cut(s)	639
BbvI	GCAGC	2 cut(s)	410, 523
BccI	CCATC	3 cut(s)	469, 716, 893
BceAI	ACGGC	1 cut(s)	214
BciT130I	CCWGG	1 cut(s)	444
BcnI	CCSGG	1 cut(s)	466
BcoDI	GTCTC	2 cut(s)	136, 239
BfaI	CTAG	2 cut(s)	323, 476
BglII	AGATCT	1 cut(s)	405
BisI	GCNGC	3 cut(s)	399, 537, 540
BlsI	GCNGC	3 cut(s)	400, 538, 541
Bme1390I	CCNGG	2 cut(s)	444, 466
Bme18I	GGWCC	1 cut(s)	164
BmeT110I	CYCGRG	1 cut(s)	834
BmgT120I	GGNCC	3 cut(s)	73, 74, 164
BmiI	GGNNCC	3 cut(s)	75, 228, 413
BmrFI	CCNGG	2 cut(s)	444, 466
BmrI	ACTGGG	2 cut(s)	80, 271
BmsI	GCATC	2 cut(s)	116, 208
BmuI	ACTGGG	2 cut(s)	80, 271
BpiI	GAAGAC	1 cut(s)	639
BpmI	CTGGAG	1 cut(s)	245
BpuMI	CCSGG	1 cut(s)	466
Bsa29I	ATCGAT	1 cut(s)	711
BsaJI	CCNNGG	2 cut(s)	80, 465
Bsc4I	CCNNNNNNNGG	5 cut(s)	86, 126, 449, 684, 685
Bse1I	ACTGG	4 cut(s)	20, 75, 219, 266
Bse3DI	GCAATG	1 cut(s)	675
BseBI	CCWGG	1 cut(s)	444
BseCI	ATCGAT	1 cut(s)	711
BseDI	CCNNGG	2 cut(s)	80, 465
BseGI	GGATG	3 cut(s)	223, 461, 634
BseLI	CCNNNNNNNGG	5 cut(s)	86, 126, 449, 684, 685
BseMI	GCAATG	1 cut(s)	675
BseMII	CTCAG	2 cut(s)	106, 309
BseNI	ACTGG	4 cut(s)	20, 75, 219, 266
BseRI	GAGGAG	2 cut(s)	192, 899
BseSI	GKGCMC	1 cut(s)	77
BseXI	GCAGC	2 cut(s)	410, 523
BshFI	GGCC	3 cut(s)	75, 90, 460
BshVI	ATCGAT	1 cut(s)	711
BsiHKCI	CYCGRG	1 cut(s)	834
BsiSI	CCGG	1 cut(s)	465
BslI	CCNNNNNNNGG	5 cut(s)	86, 126, 449, 684, 685
BsmAI	GTCTC	2 cut(s)	136, 239
BsnI	GGCC	3 cut(s)	75, 90, 460
BsoBI	CYCGRG	1 cut(s)	834
Bsp120I	GGGCCC	1 cut(s)	73
Bsp1286I	GDGCHC	1 cut(s)	77
Bsp143I	GATC	1 cut(s)	405
Bsp19I	CCATGG	1 cut(s)	80
BspACI	CCGC	2 cut(s)	539, 698
BspANI	GGCC	3 cut(s)	75, 90, 460
BspCNI	CTCAG	2 cut(s)	105, 310
BspDI	ATCGAT	1 cut(s)	711
BspLI	GGNNCC	3 cut(s)	75, 228, 413
BsrBI	CCGCTC	1 cut(s)	700
BsrDI	GCAATG	1 cut(s)	675
BsrI	ACTGG	4 cut(s)	20, 75, 219, 266
BssECI	CCNNGG	2 cut(s)	80, 465
BssMI	GATC	1 cut(s)	405
BssT1I	CCWWGG	1 cut(s)	80
Bst2UI	CCWGG	1 cut(s)	444
Bst4CI	ACNGT	1 cut(s)	549
Bst6I	CTCTTC	3 cut(s)	650, 876, 906
BstC8I	GCNNGC	3 cut(s)	534, 573, 726
BstDEI	CTNAG	2 cut(s)	92, 318
BstDSI	CCRYGG	1 cut(s)	80
BstENI	CCTNNNNNAGG	1 cut(s)	124
BstF5I	GGATG	3 cut(s)	223, 461, 634
BstHHI	GCGC	2 cut(s)	49, 223
BstKTI	GATC	1 cut(s)	408
BstMAI	GTCTC	2 cut(s)	136, 239
BstMBI	GATC	1 cut(s)	405
BstMWI	GCNNNNNNNGC	5 cut(s)	32, 55, 72, 572, 581
BstNI	CCWGG	1 cut(s)	444
BstNSI	RCATGY	1 cut(s)	728
BstSCI	CCNGG	2 cut(s)	442, 464
BstSLI	GKGCMC	1 cut(s)	77
BstV1I	GCAGC	2 cut(s)	410, 523
BstV2I	GAAGAC	1 cut(s)	639
BstX2I	RGATCY	1 cut(s)	405
BstYI	RGATCY	1 cut(s)	405
Bsu15I	ATCGAT	1 cut(s)	711
BsuRI	GGCC	3 cut(s)	75, 90, 460
BsuTUI	ATCGAT	1 cut(s)	711
BtgI	CCRYGG	1 cut(s)	80
BtsCI	GGATG	3 cut(s)	223, 461, 634
BtsIMutI	CAGTG	3 cut(s)	100, 212, 259
Cac8I	GCNNGC	3 cut(s)	534, 573, 726
CfoI	GCGC	2 cut(s)	49, 223
Cfr13I	GGNCC	3 cut(s)	73, 74, 164
ClaI	ATCGAT	1 cut(s)	711
CsiI	ACCWGGT	1 cut(s)	442
Csp6I	GTAC	1 cut(s)	17
CviAII	CATG	4 cut(s)	81, 416, 725, 795
CviQI	GTAC	1 cut(s)	17
DdeI	CTNAG	2 cut(s)	92, 318
DpnI	GATC	1 cut(s)	407
DpnII	GATC	1 cut(s)	405
Eam1104I	CTCTTC	3 cut(s)	650, 876, 906
EarI	CTCTTC	3 cut(s)	650, 876, 906
Eco130I	CCWWGG	1 cut(s)	80
Eco147I	AGGCCT	1 cut(s)	90
Eco24I	GRGCYC	1 cut(s)	77
Eco47I	GGWCC	1 cut(s)	164
Eco57I	CTGAAG	1 cut(s)	215
Eco88I	CYCGRG	1 cut(s)	834
EcoNI	CCTNNNNNAGG	1 cut(s)	124
EcoRII	CCWGG	1 cut(s)	442
EcoT14I	CCWWGG	1 cut(s)	80
EcoT38I	GRGCYC	1 cut(s)	77
ErhI	CCWWGG	1 cut(s)	80
FaeI	CATG	4 cut(s)	84, 419, 728, 798
FatI	CATG	4 cut(s)	80, 415, 724, 794
Fnu4HI	GCNGC	3 cut(s)	399, 537, 540
FokI	GGATG	3 cut(s)	230, 448, 641
FriOI	GRGCYC	1 cut(s)	77
Fsp4HI	GCNGC	3 cut(s)	399, 537, 540
FspBI	CTAG	2 cut(s)	323, 476
GlaI	GCGC	2 cut(s)	48, 222
GluI	GCNGC	3 cut(s)	399, 537, 540
GsuI	CTGGAG	1 cut(s)	245
HaeIII	GGCC	3 cut(s)	75, 90, 460
HapII	CCGG	1 cut(s)	465
HhaI	GCGC	2 cut(s)	49, 223
Hin1II	CATG	4 cut(s)	84, 419, 728, 798
Hin6I	GCGC	2 cut(s)	47, 221
HinP1I	GCGC	2 cut(s)	47, 221
HinfI	GANTC	4 cut(s)	247, 431, 658, 941
HpaII	CCGG	1 cut(s)	465
HphI	GGTGA	2 cut(s)	102, 664
Hpy166II	GTNNAC	1 cut(s)	925
Hpy188I	TCNGA	3 cut(s)	747, 898, 946
Hpy188III	TCNNGA	3 cut(s)	251, 409, 476
Hpy8I	GTNNAC	1 cut(s)	925
HpyAV	CCTTC	4 cut(s)	123, 305, 450, 861
HpyCH4III	ACNGT	1 cut(s)	549
HpyCH4V	TGCA	7 cut(s)	124, 150, 398, 575, 608, 668, 827
HpyF10VI	GCNNNNNNNGC	5 cut(s)	32, 55, 72, 572, 581
HpyF3I	CTNAG	2 cut(s)	92, 318
Hsp92II	CATG	4 cut(s)	84, 419, 728, 798
HspAI	GCGC	2 cut(s)	47, 221
Kzo9I	GATC	1 cut(s)	405
LmnI	GCTCC	3 cut(s)	226, 705, 721
Lsp1109I	GCAGC	2 cut(s)	410, 523
LweI	GCATC	2 cut(s)	116, 208
MabI	ACCWGGT	1 cut(s)	442
MaeI	CTAG	2 cut(s)	323, 476
MaeIII	GTNAC	1 cut(s)	4
MalI	GATC	1 cut(s)	407
MbiI	CCGCTC	1 cut(s)	700
MboI	GATC	1 cut(s)	405
MflI	RGATCY	1 cut(s)	405
MhlI	GDGCHC	1 cut(s)	77
MluCI	AATT	5 cut(s)	52, 185, 329, 483, 512
MlyI	GAGTC	4 cut(s)	241, 440, 667, 935
MmeI	TCCRAC	1 cut(s)	318
MnlI	CCTC	8 cut(s)	101, 210, 213, 446, 746, 844, 877, 940
MseI	TTAA	1 cut(s)	486
MspI	CCGG	1 cut(s)	465
MspR9I	CCNGG	2 cut(s)	444, 466
MvaI	CCWGG	1 cut(s)	444
MwoI	GCNNNNNNNGC	5 cut(s)	32, 55, 72, 572, 581
NciI	CCSGG	1 cut(s)	466
NcoI	CCATGG	1 cut(s)	80
NdeII	GATC	1 cut(s)	405
NlaIII	CATG	4 cut(s)	84, 419, 728, 798
NlaIV	GGNNCC	3 cut(s)	75, 228, 413
NspI	RCATGY	1 cut(s)	728
PaeI	GCATGC	1 cut(s)	728
PaeR7I	CTCGAG	1 cut(s)	834
PceI	AGGCCT	1 cut(s)	90
PflMI	CCANNNNNTGG	1 cut(s)	449
PkrI	GCNGC	3 cut(s)	400, 538, 541
PleI	GAGTC	4 cut(s)	241, 439, 666, 935
PpsI	GAGTC	4 cut(s)	241, 439, 666, 935
PshBI	ATTAAT	1 cut(s)	486
Psp6I	CCWGG	1 cut(s)	442
PspGI	CCWGG	1 cut(s)	442
PspN4I	GGNNCC	3 cut(s)	75, 228, 413
PspOMI	GGGCCC	1 cut(s)	73
PspPI	GGNCC	3 cut(s)	73, 74, 164
PspXI	VCTCGAGB	1 cut(s)	834
PsuI	RGATCY	1 cut(s)	405
RsaI	GTAC	1 cut(s)	18
RsaNI	GTAC	1 cut(s)	17
SaqAI	TTAA	1 cut(s)	486
SatI	GCNGC	3 cut(s)	399, 537, 540
Sau3AI	GATC	1 cut(s)	405
Sau96I	GGNCC	3 cut(s)	73, 74, 164
SchI	GAGTC	4 cut(s)	241, 440, 667, 935
ScrFI	CCNGG	2 cut(s)	444, 466
SduI	GDGCHC	1 cut(s)	77
SexAI	ACCWGGT	1 cut(s)	442
SfaNI	GCATC	2 cut(s)	116, 208
Sfr274I	CTCGAG	1 cut(s)	834
SinI	GGWCC	1 cut(s)	164
SlaI	CTCGAG	1 cut(s)	834
SmlI	CTYRAG	1 cut(s)	834
SmoI	CTYRAG	1 cut(s)	834
SphI	GCATGC	1 cut(s)	728
Sse9I	AATT	5 cut(s)	52, 185, 329, 483, 512
SseBI	AGGCCT	1 cut(s)	90
SsiI	CCGC	2 cut(s)	539, 698
SspMI	CTAG	2 cut(s)	323, 476
StuI	AGGCCT	1 cut(s)	90
StyD4I	CCNGG	2 cut(s)	442, 464
StyI	CCWWGG	1 cut(s)	80
TaaI	ACNGT	1 cut(s)	549
TaqI	TCGA	4 cut(s)	309, 711, 738, 835
TasI	AATT	5 cut(s)	52, 185, 329, 483, 512
TauI	GCSGC	1 cut(s)	542
Tru1I	TTAA	1 cut(s)	486
Tru9I	TTAA	1 cut(s)	486
TscAI	CASTG	3 cut(s)	100, 219, 266
TseI	GCWGC	2 cut(s)	398, 536
TspDTI	ATGAA	6 cut(s)	342, 452, 505, 645, 686, 783
TspRI	CASTG	3 cut(s)	100, 219, 266
Van91I	CCANNNNNTGG	1 cut(s)	449
VpaK11BI	GGWCC	1 cut(s)	164
VspI	ATTAAT	1 cut(s)	486
XagI	CCTNNNNNAGG	1 cut(s)	124
XapI	RAATTY	3 cut(s)	52, 185, 512
XbaI	TCTAGA	1 cut(s)	475
XceI	RCATGY	1 cut(s)	728
XhoI	CTCGAG	1 cut(s)	834
XspI	CTAG	2 cut(s)	323, 476

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.