Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0004674

Physical Location & Seq

Genomic Coordinates Forward (+)

27524108 .. 27526572

Gene Structure 2465 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1173700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGGTAACACCAATCGGAGTTGCAGCAGCAGCAACAGCACCGCAAGCTACGACTGGTCCGCTAACGTGCACACTGGGTCCGTCCTGTCAAGGGCTCAGTGGAAGTCTGGGACCAGCTCGCAGTTTGCAATGGCCAAAGAAACAGAGAAAATGCAGAAGGAAAGTCGGTGCCATCGATATTAGGGCACAATTTGAGCTGAAGCCTCCTCCATATCCACTGGATGCGTTGGAGCCGCATATGGGCAAGGAGACGTTAGAGTATCACTGGGGGAAGCACCATAGGGGTTATGTGGACAACCTAAACAAGTTGATAGCAGGAACCGAACTAGATGAATTGTCATTGGAAGATGTCATACTTGCTACATACAACAAGGGGGATCTGCTCCCACCTTTCAACCAAGCAGCGCAGATCTGGAACCATGACTTCTTCTGGGAATCCATGAAACCAGGTGGCGGGGGAAAACCATCCGGGGAACTTCTAGAACTAATTAATAGAGACTTTGGTTCTTTTGAGAGATTGATTGACGACTTAAGGTCAGCTGCAACTACACAGTTGGGTTCTGGCTGGGCTTGGCTTGCATATAAAGCGAATAGACTTGATGTTGGAAACGCAGTAAATCCTAAGCCATCCGATGAAGACAAGAAGCTTGTAGTGGTGAAGAGTCCTAATGCCGTTAACCCGCTTATTTGGGATTATTCTCCGCTCCTTACTATCGATGTTTGGGAGCATGCTTACTACCTCGATTTTCAGAACCGGCGAGCAGATTACTTATCAATCTTCTTGGAGAAACTCGTATCGTGGGAAGCAGTCAGTTCTAGGCTTGAAATAGCAAAGGCTCGAGCTACTGAAAGAGAGGAAGAAGAGGAAAGGAAGAAGAGAGAGGAGGAGGAGAAAACATCAGACGGCGAAGTTCCAGAGATTTATGTGGACAACAAGAGCGATGACTCAGAGACCGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0000303 GO:0000305 GO:0003674 GO:0003824 GO:0004784 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006801 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009295 GO:0009314 GO:0009411 GO:0009416 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009636 GO:0009987 GO:0010035 GO:0016209 GO:0016491 GO:0016721 GO:0019430 GO:0033554 GO:0034599 GO:0034614 GO:0042221 GO:0042644 GO:0042646 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0071450 GO:0071451 GO:0072593 GO:0097237 GO:0098754 GO:0098869 GO:1901700 GO:1901701 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04013 ko04068 ko04146 ko04211 ko04212 ko04213 ko05016 map04013 map04068 map04146 map04211 map04212 map04213 map05016

Pfam Domains

Protein Families

Sod_Fe_C Sod_Fe_N

Protein Analysis

320

Amino Acids

35.81

Weight (kDa)

5.15

Isoelectric Point (pI)

42.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sod_Fe_N	PF00081	63 - 147	1.1e-23	Iron/manganese superoxide dismutases, alpha-hairpin domain
Sod_Fe_C	PF02777	155 - 273	9.6e-29	Iron/manganese superoxide dismutases, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004674)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00651 AT4G25100 AT4G25100 AT4G25100 AT4G25100 AT4G25100 AT5G51100 AT5G51100 AT5G51100 AT5G51100 AT5G51100 AT5G51100
fragaria_vesca	FvH4_7g26501 FvH4_7g26501
malus_domestica	MD01G1173700.v1.1 MD07G1240700.v1.1
prunus_persica	Prupe.2G269400_v2.0.a1 Prupe.2G269400_v2.0.a1
pyrus_communis	pycom01g18560 pycom07g21700
rosa_chinensis	RchiOBHm_Chr1g0373101
rosa_laevigata	RLG00000026848
rosa_multiflora	Rmu_sc0002004.1_g000002
rosa_roxburghii	Rroxscaffold_4G00284450
rosa_rugosa	Rorug01G0376300 Rorug04G0079400
rosa_samantha	Rh1AG384700 Rh1BG348600 Rh1CG362000 Rh1DG379500
rosa_wichuraiana	Rw1G033930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	167
AccBSI	CCGCTC	1 cut(s)	703
AciI	CCGC	6 cut(s)	41, 59, 233, 453, 680, 701
AclWI	GGATC	1 cut(s)	384
AcoI	YGGCCR	1 cut(s)	131
AcuI	CTGAAG	1 cut(s)	218
AfiI	CCNNNNNNNGG	3 cut(s)	90, 239, 452
AflII	CTTAAG	1 cut(s)	529
AgsI	TTSAA	2 cut(s)	394, 824
AhdI	GACNNNNNGTC	1 cut(s)	532
AjnI	CCWGG	1 cut(s)	445
AluBI	AGCT	6 cut(s)	47, 116, 196, 539, 646, 842
AluI	AGCT	6 cut(s)	47, 116, 196, 539, 646, 842
Alw21I	GWGCWC	1 cut(s)	71
Alw26I	GTCTC	3 cut(s)	242, 489, 944
Alw44I	GTGCAC	1 cut(s)	67
AlwI	GGATC	1 cut(s)	384
Ama87I	CYCGRG	1 cut(s)	837
AoxI	GGCC	1 cut(s)	131
ApaLI	GTGCAC	1 cut(s)	67
ApeKI	GCWGC	5 cut(s)	23, 26, 29, 401, 539
AseI	ATTAAT	1 cut(s)	489
AspLEI	GCGC	1 cut(s)	406
AspS9I	GGNCC	3 cut(s)	56, 77, 110
AsuC2I	CCSGG	1 cut(s)	469
AsuHPI	GGTGA	1 cut(s)	667
AvaI	CYCGRG	1 cut(s)	837
AvaII	GGWCC	3 cut(s)	56, 77, 110
BaeGI	GKGCMC	2 cut(s)	71, 187
BalI	TGGCCA	1 cut(s)	133
BanI	GGYRCC	1 cut(s)	167
BanII	GRGCYC	1 cut(s)	96
BarI	GAAGNNNNNNTAC	2 cut(s)	336, 368
BbsI	GAAGAC	1 cut(s)	642
Bbv12I	GWGCWC	1 cut(s)	71
BbvI	GCAGC	5 cut(s)	35, 38, 41, 413, 526
BccI	CCATC	3 cut(s)	179, 472, 634
BceAI	ACGGC	2 cut(s)	656, 919
BciT130I	CCWGG	1 cut(s)	447
BcnI	CCSGG	1 cut(s)	469
BcoDI	GTCTC	3 cut(s)	242, 489, 944
BfaI	CTAG	3 cut(s)	326, 479, 816
BfrI	CTTAAG	1 cut(s)	529
BglII	AGATCT	1 cut(s)	408
BisI	GCNGC	6 cut(s)	24, 27, 30, 233, 402, 540
BlsI	GCNGC	6 cut(s)	25, 28, 31, 234, 403, 541
Bme1390I	CCNGG	2 cut(s)	447, 469
Bme18I	GGWCC	3 cut(s)	56, 77, 110
BmeRI	GACNNNNNGTC	1 cut(s)	532
BmeT110I	CYCGRG	1 cut(s)	837
BmgT120I	GGNCC	3 cut(s)	56, 77, 110
BmiI	GGNNCC	6 cut(s)	78, 111, 169, 231, 319, 416
BmrFI	CCNGG	2 cut(s)	447, 469
BmrI	ACTGGG	2 cut(s)	83, 274
BmsI	GCATC	1 cut(s)	211
BmuI	ACTGGG	2 cut(s)	83, 274
BpiI	GAAGAC	1 cut(s)	642
Bpu10I	CCTNAGC	1 cut(s)	621
BpuMI	CCSGG	1 cut(s)	469
Bsa29I	ATCGAT	2 cut(s)	174, 714
BsaI	GGTCTC	1 cut(s)	944
BsaJI	CCNNGG	1 cut(s)	468
Bsc4I	CCNNNNNNNGG	3 cut(s)	90, 239, 452
Bse118I	RCCGGY	1 cut(s)	753
Bse1I	ACTGG	4 cut(s)	58, 78, 222, 269
Bse3DI	GCAATG	1 cut(s)	134
BseBI	CCWGG	1 cut(s)	447
BseCI	ATCGAT	2 cut(s)	174, 714
BseDI	CCNNGG	1 cut(s)	468
BseGI	GGATG	3 cut(s)	226, 464, 626
BseLI	CCNNNNNNNGG	3 cut(s)	90, 239, 452
BseMI	GCAATG	1 cut(s)	134
BseMII	CTCAG	2 cut(s)	109, 960
BseNI	ACTGG	4 cut(s)	58, 78, 222, 269
BseRI	GAGGAG	4 cut(s)	195, 896, 899, 902
BseSI	GKGCMC	2 cut(s)	71, 187
BseXI	GCAGC	5 cut(s)	35, 38, 41, 413, 526
BseYI	CCCAGC	1 cut(s)	564
BshFI	GGCC	1 cut(s)	133
BshNI	GGYRCC	1 cut(s)	167
BshVI	ATCGAT	2 cut(s)	174, 714
BsiHKAI	GWGCWC	1 cut(s)	71
BsiHKCI	CYCGRG	1 cut(s)	837
BsiSI	CCGG	2 cut(s)	468, 754
BslFI	GGGAC	1 cut(s)	123
BslI	CCNNNNNNNGG	3 cut(s)	90, 239, 452
BsmAI	GTCTC	3 cut(s)	242, 489, 944
BsmBI	CGTCTC	1 cut(s)	242
BsmFI	GGGAC	1 cut(s)	123
BsnI	GGCC	1 cut(s)	133
Bso31I	GGTCTC	1 cut(s)	944
BsoBI	CYCGRG	1 cut(s)	837
Bsp1286I	GDGCHC	3 cut(s)	71, 96, 187
Bsp143I	GATC	2 cut(s)	376, 408
BspACI	CCGC	6 cut(s)	41, 59, 233, 453, 680, 701
BspANI	GGCC	1 cut(s)	133
BspCNI	CTCAG	2 cut(s)	108, 959
BspDI	ATCGAT	2 cut(s)	174, 714
BspLI	GGNNCC	6 cut(s)	78, 111, 169, 231, 319, 416
BspPI	GGATC	1 cut(s)	384
BspT107I	GGYRCC	1 cut(s)	167
BspTI	CTTAAG	1 cut(s)	529
BspTNI	GGTCTC	1 cut(s)	944
BsrBI	CCGCTC	1 cut(s)	703
BsrDI	GCAATG	1 cut(s)	134
BsrFI	RCCGGY	1 cut(s)	753
BsrI	ACTGG	4 cut(s)	58, 78, 222, 269
BssAI	RCCGGY	1 cut(s)	753
BssECI	CCNNGG	1 cut(s)	468
BssMI	GATC	2 cut(s)	376, 408
Bst2UI	CCWGG	1 cut(s)	447
Bst4CI	ACNGT	1 cut(s)	552
Bst6I	CTCTTC	3 cut(s)	653, 855, 869
BstAFI	CTTAAG	1 cut(s)	529
BstC8I	GCNNGC	5 cut(s)	45, 118, 576, 729, 759
BstDEI	CTNAG	3 cut(s)	95, 621, 946
BstF5I	GGATG	3 cut(s)	226, 464, 626
BstHHI	GCGC	1 cut(s)	406
BstKTI	GATC	2 cut(s)	379, 411
BstMAI	GTCTC	3 cut(s)	242, 489, 944
BstMBI	GATC	2 cut(s)	376, 408
BstMWI	GCNNNNNNNGC	5 cut(s)	29, 35, 44, 575, 584
BstNI	CCWGG	1 cut(s)	447
BstNSI	RCATGY	1 cut(s)	731
BstSCI	CCNGG	2 cut(s)	445, 467
BstSLI	GKGCMC	2 cut(s)	71, 187
BstV1I	GCAGC	5 cut(s)	35, 38, 41, 413, 526
BstV2I	GAAGAC	1 cut(s)	642
BstX2I	RGATCY	2 cut(s)	376, 408
BstYI	RGATCY	2 cut(s)	376, 408
Bsu15I	ATCGAT	2 cut(s)	174, 714
BsuRI	GGCC	1 cut(s)	133
BsuTUI	ATCGAT	2 cut(s)	174, 714
BtgZI	GCGATG	1 cut(s)	954
BtsCI	GGATG	3 cut(s)	226, 464, 626
BtsIMutI	CAGTG	4 cut(s)	71, 103, 215, 262
Cac8I	GCNNGC	5 cut(s)	45, 118, 576, 729, 759
CfoI	GCGC	1 cut(s)	406
Cfr10I	RCCGGY	1 cut(s)	753
Cfr13I	GGNCC	3 cut(s)	56, 77, 110
ClaI	ATCGAT	2 cut(s)	174, 714
CsiI	ACCWGGT	1 cut(s)	445
CviAII	CATG	3 cut(s)	419, 439, 728
DdeI	CTNAG	3 cut(s)	95, 621, 946
DpnI	GATC	2 cut(s)	378, 410
DpnII	GATC	2 cut(s)	376, 408
DriI	GACNNNNNGTC	1 cut(s)	532
EaeI	YGGCCR	1 cut(s)	131
Eam1104I	CTCTTC	3 cut(s)	653, 855, 869
Eam1105I	GACNNNNNGTC	1 cut(s)	532
EarI	CTCTTC	3 cut(s)	653, 855, 869
Eco24I	GRGCYC	1 cut(s)	96
Eco31I	GGTCTC	1 cut(s)	944
Eco47I	GGWCC	3 cut(s)	56, 77, 110
Eco57I	CTGAAG	1 cut(s)	218
Eco88I	CYCGRG	1 cut(s)	837
EcoRII	CCWGG	1 cut(s)	445
EcoT38I	GRGCYC	1 cut(s)	96
Esp3I	CGTCTC	1 cut(s)	242
FaeI	CATG	3 cut(s)	422, 442, 731
FaqI	GGGAC	1 cut(s)	123
FatI	CATG	3 cut(s)	418, 438, 727
FauI	CCCGC	2 cut(s)	446, 687
FauNDI	CATATG	1 cut(s)	237
Fnu4HI	GCNGC	6 cut(s)	24, 27, 30, 233, 402, 540
FokI	GGATG	3 cut(s)	233, 451, 613
FriOI	GRGCYC	1 cut(s)	96
Fsp4HI	GCNGC	6 cut(s)	24, 27, 30, 233, 402, 540
FspBI	CTAG	3 cut(s)	326, 479, 816
GlaI	GCGC	1 cut(s)	405
GluI	GCNGC	6 cut(s)	24, 27, 30, 233, 402, 540
GsaI	CCCAGC	1 cut(s)	568
HaeIII	GGCC	1 cut(s)	133
HapII	CCGG	2 cut(s)	468, 754
HhaI	GCGC	1 cut(s)	406
Hin1II	CATG	3 cut(s)	422, 442, 731
Hin6I	GCGC	1 cut(s)	404
HinP1I	GCGC	1 cut(s)	404
HincII	GTYRAC	1 cut(s)	676
HindII	GTYRAC	1 cut(s)	676
HindIII	AAGCTT	1 cut(s)	644
HinfI	GANTC	3 cut(s)	434, 661, 944
HpaI	GTTAAC	1 cut(s)	676
HpaII	CCGG	2 cut(s)	468, 754
HphI	GGTGA	1 cut(s)	667
Hpy166II	GTNNAC	4 cut(s)	69, 292, 676, 928
Hpy188I	TCNGA	5 cut(s)	17, 631, 750, 901, 949
Hpy188III	TCNNGA	3 cut(s)	412, 479, 914
Hpy8I	GTNNAC	4 cut(s)	69, 292, 676, 928
HpyAV	CCTTC	1 cut(s)	150
HpyCH4III	ACNGT	1 cut(s)	552
HpyCH4IV	ACGT	2 cut(s)	65, 251
HpyCH4V	TGCA	6 cut(s)	23, 69, 127, 153, 542, 578
HpyF10VI	GCNNNNNNNGC	5 cut(s)	29, 35, 44, 575, 584
HpyF3I	CTNAG	3 cut(s)	95, 621, 946
HpySE526I	ACGT	2 cut(s)	65, 251
Hsp92II	CATG	3 cut(s)	422, 442, 731
HspAI	GCGC	1 cut(s)	404
KspAI	GTTAAC	1 cut(s)	676
Kzo9I	GATC	2 cut(s)	376, 408
LmnI	GCTCC	4 cut(s)	229, 387, 708, 724
Lsp1109I	GCAGC	5 cut(s)	35, 38, 41, 413, 526
LweI	GCATC	1 cut(s)	211
MabI	ACCWGGT	1 cut(s)	445
MaeI	CTAG	3 cut(s)	326, 479, 816
MaeII	ACGT	2 cut(s)	65, 251
MaeIII	GTNAC	1 cut(s)	4
MalI	GATC	2 cut(s)	378, 410
MbiI	CCGCTC	1 cut(s)	703
MboI	GATC	2 cut(s)	376, 408
MboII	GAAGA	9 cut(s)	356, 418, 647, 670, 769, 869, 872, 883, 886
MflI	RGATCY	2 cut(s)	376, 408
MhlI	GDGCHC	3 cut(s)	71, 96, 187
MlsI	TGGCCA	1 cut(s)	133
MluCI	AATT	3 cut(s)	188, 332, 486
MluNI	TGGCCA	1 cut(s)	133
MlyI	GAGTC	2 cut(s)	670, 938
MmeI	TCCRAC	2 cut(s)	207, 583
MnlI	CCTC	8 cut(s)	213, 216, 749, 847, 856, 874, 877, 880
Mox20I	TGGCCA	1 cut(s)	133
MscI	TGGCCA	1 cut(s)	133
MseI	TTAA	3 cut(s)	489, 530, 675
Msp20I	TGGCCA	1 cut(s)	133
MspA1I	CMGCKG	1 cut(s)	539
MspCI	CTTAAG	1 cut(s)	529
MspI	CCGG	2 cut(s)	468, 754
MspR9I	CCNGG	2 cut(s)	447, 469
MvaI	CCWGG	1 cut(s)	447
MwoI	GCNNNNNNNGC	5 cut(s)	29, 35, 44, 575, 584
NciI	CCSGG	1 cut(s)	469
NdeI	CATATG	1 cut(s)	237
NdeII	GATC	2 cut(s)	376, 408
NlaIII	CATG	3 cut(s)	422, 442, 731
NlaIV	GGNNCC	6 cut(s)	78, 111, 169, 231, 319, 416
NspI	RCATGY	1 cut(s)	731
PaeI	GCATGC	1 cut(s)	731
PaeR7I	CTCGAG	1 cut(s)	837
PcsI	WCGNNNNNNNCGW	1 cut(s)	171
PfeI	GAWTC	1 cut(s)	434
PkrI	GCNGC	6 cut(s)	25, 28, 31, 234, 403, 541
PleI	GAGTC	2 cut(s)	669, 938
PpsI	GAGTC	2 cut(s)	669, 938
PshBI	ATTAAT	1 cut(s)	489
Psp6I	CCWGG	1 cut(s)	445
PspFI	CCCAGC	1 cut(s)	564
PspGI	CCWGG	1 cut(s)	445
PspN4I	GGNNCC	6 cut(s)	78, 111, 169, 231, 319, 416
PspPI	GGNCC	3 cut(s)	56, 77, 110
PspXI	VCTCGAGB	1 cut(s)	837
PsuI	RGATCY	2 cut(s)	376, 408
PvuII	CAGCTG	1 cut(s)	539
SaqAI	TTAA	3 cut(s)	489, 530, 675
SatI	GCNGC	6 cut(s)	24, 27, 30, 233, 402, 540
Sau3AI	GATC	2 cut(s)	376, 408
Sau96I	GGNCC	3 cut(s)	56, 77, 110
SchI	GAGTC	2 cut(s)	670, 938
ScrFI	CCNGG	2 cut(s)	447, 469
SduI	GDGCHC	3 cut(s)	71, 96, 187
SexAI	ACCWGGT	1 cut(s)	445
SfaNI	GCATC	1 cut(s)	211
Sfr274I	CTCGAG	1 cut(s)	837
SinI	GGWCC	3 cut(s)	56, 77, 110
SlaI	CTCGAG	1 cut(s)	837
SmlI	CTYRAG	2 cut(s)	529, 837
SmoI	CTYRAG	2 cut(s)	529, 837
SphI	GCATGC	1 cut(s)	731
Sse9I	AATT	3 cut(s)	188, 332, 486
SsiI	CCGC	6 cut(s)	41, 59, 233, 453, 680, 701
SspMI	CTAG	3 cut(s)	326, 479, 816
StyD4I	CCNGG	2 cut(s)	445, 467
TaaI	ACNGT	1 cut(s)	552
TaiI	ACGT	2 cut(s)	68, 254
TaqI	TCGA	4 cut(s)	174, 714, 741, 838
TasI	AATT	3 cut(s)	188, 332, 486
TauI	GCSGC	1 cut(s)	235
TfiI	GAWTC	1 cut(s)	434
Tru1I	TTAA	3 cut(s)	489, 530, 675
Tru9I	TTAA	3 cut(s)	489, 530, 675
TscAI	CASTG	4 cut(s)	78, 103, 222, 269
TseI	GCWGC	5 cut(s)	23, 26, 29, 401, 539
TspDTI	ATGAA	3 cut(s)	345, 455, 648
TspGWI	ACGGA	1 cut(s)	69
TspRI	CASTG	4 cut(s)	78, 103, 222, 269
Vha464I	CTTAAG	1 cut(s)	529
VneI	GTGCAC	1 cut(s)	67
VpaK11BI	GGWCC	3 cut(s)	56, 77, 110
VspI	ATTAAT	1 cut(s)	489
XbaI	TCTAGA	1 cut(s)	478
XceI	RCATGY	1 cut(s)	731
XhoI	CTCGAG	1 cut(s)	837
XspI	CTAG	3 cut(s)	326, 479, 816

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.