Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0004674

Physical Location & Seq

Genomic Coordinates Forward (+)

48164278 .. 48165976

Gene Structure 1699 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG348600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGGTAATACCAGCAGTACTAGCAACATCAACAACAACAACACCTTTCGCTGCGCCCAATTCGCTAACTTGCGCACTGGGCCCACCGTGGAAAGGCCTCACTGGAAGTCTGGGATCACCTTCAAGCTTGCTATGGCTAAAGAAACAGAGACAATGCAAAAGGAAAGGTGGTTCAAGTAGTATCTGTGCCAAATTTGAGCTGAAGCCTCCTCCATATCCACTGGATGCGCTGGAGCCGCATATGAGCAAGGAGACTCTGGAGTATCACTGGGGGAAGCACCATAGGGGTTATGTGGATAACCTAAACAACCAAATCGAAGGAACCGAGCTAGATGAATTGTCGTTGGAAGATATTATACTTGCTACACACAACAACGGAGATTTGCTTCCACCTTTCAACAATGCTGCACAGATCTGGAACCATGACTTCTTCTGGGAGTCCATGAAACCAGGTGGTGGAGGAAGGCCATCCGGGGAACTTCTAGAACTAATTAATAGAGATTTTGGTTCTTTTGAGAGATTCATTGATGATATAAGGTTGGCTGCGGCTACACAGTTTGGTTCTGGTTGGGCTTGGCTTGCATATAAAGCAAATAGACTTGATGTTGAAAATGCAGTAAATCCTAATCCAACTGACGAAGACAAAAGGCTTGTAGTGGTGAAGAGTCCTAATGCAGTAAACCCCCTTATATGGGATTATTCTCCGCTCCTTACCATCGATGTTTGGGAGGTATTTGTAATTTATCTTGTATATTCATGTCTGAAAATAGTTATATACTATATATGGGTTTTATGGGAAAACCATTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0000303 GO:0000305 GO:0003674 GO:0003824 GO:0004784 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006801 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009295 GO:0009314 GO:0009411 GO:0009416 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009636 GO:0009987 GO:0010035 GO:0016209 GO:0016491 GO:0016721 GO:0019430 GO:0033554 GO:0034599 GO:0034614 GO:0042221 GO:0042644 GO:0042646 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0071450 GO:0071451 GO:0072593 GO:0097237 GO:0098754 GO:0098869 GO:1901700 GO:1901701 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04013 ko04068 ko04146 ko04211 ko04212 ko04213 ko05016 map04013 map04068 map04146 map04211 map04212 map04213 map05016

Pfam Domains

Protein Families

Sod_Fe_C Sod_Fe_N

Protein Analysis

269

Amino Acids

30.27

Weight (kDa)

5.5

Isoelectric Point (pI)

36.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sod_Fe_N	PF00081	64 - 149	3e-25	Iron/manganese superoxide dismutases, alpha-hairpin domain
Sod_Fe_C	PF02777	156 - 243	1.1e-14	Iron/manganese superoxide dismutases, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004674)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00651 AT4G25100 AT4G25100 AT4G25100 AT4G25100 AT4G25100 AT5G51100 AT5G51100 AT5G51100 AT5G51100 AT5G51100 AT5G51100
fragaria_vesca	FvH4_7g26501 FvH4_7g26501
malus_domestica	MD01G1173700.v1.1 MD07G1240700.v1.1
prunus_persica	Prupe.2G269400_v2.0.a1 Prupe.2G269400_v2.0.a1
pyrus_communis	pycom01g18560 pycom07g21700
rosa_chinensis	RchiOBHm_Chr1g0373101
rosa_laevigata	RLG00000026848
rosa_multiflora	Rmu_sc0002004.1_g000002
rosa_roxburghii	Rroxscaffold_4G00284450
rosa_rugosa	Rorug01G0376300 Rorug04G0079400
rosa_samantha	Rh1AG384700 Rh1BG348600 Rh1CG362000 Rh1DG379500
rosa_wichuraiana	Rw1G033930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	73
AccB7I	CCANNNNNTGG	1 cut(s)	455
AccBSI	CCGCTC	1 cut(s)	706
AciI	CCGC	3 cut(s)	236, 545, 704
AclWI	GGATC	1 cut(s)	121
AcsI	RAATTY	1 cut(s)	191
AcuI	CTGAAG	1 cut(s)	221
AfaI	GTAC	1 cut(s)	18
AfiI	CCNNNNNNNGG	4 cut(s)	92, 455, 690, 691
AgsI	TTSAA	4 cut(s)	123, 174, 397, 608
AjnI	CCWGG	1 cut(s)	448
AloI	GAACNNNNNNTCC	2 cut(s)	154, 186
AluBI	AGCT	3 cut(s)	126, 199, 328
AluI	AGCT	3 cut(s)	126, 199, 328
Alw26I	GTCTC	2 cut(s)	142, 245
AlwI	GGATC	1 cut(s)	121
AoxI	GGCC	3 cut(s)	79, 94, 464
ApaI	GGGCCC	1 cut(s)	83
ApeKI	GCWGC	3 cut(s)	50, 404, 542
ApoI	RAATTY	1 cut(s)	191
AseI	ATTAAT	1 cut(s)	492
AspLEI	GCGC	3 cut(s)	55, 74, 229
AspS9I	GGNCC	2 cut(s)	79, 80
AsuC2I	CCSGG	1 cut(s)	472
AsuHPI	GGTGA	2 cut(s)	108, 670
BaeGI	GKGCMC	1 cut(s)	83
BanII	GRGCYC	1 cut(s)	83
BarI	GAAGNNNNNNTAC	2 cut(s)	339, 371
BbsI	GAAGAC	1 cut(s)	645
BbvI	GCAGC	3 cut(s)	37, 391, 529
BccI	CCATC	2 cut(s)	475, 722
BciT130I	CCWGG	1 cut(s)	450
BcnI	CCSGG	1 cut(s)	472
BcoDI	GTCTC	2 cut(s)	142, 245
BfaI	CTAG	3 cut(s)	20, 329, 482
BglII	AGATCT	1 cut(s)	411
BisI	GCNGC	5 cut(s)	51, 236, 405, 543, 546
BlsI	GCNGC	5 cut(s)	52, 237, 406, 544, 547
BmcAI	AGTACT	1 cut(s)	18
Bme1390I	CCNGG	2 cut(s)	450, 472
BmgT120I	GGNCC	2 cut(s)	79, 80
BmiI	GGNNCC	4 cut(s)	81, 234, 322, 419
BmrFI	CCNGG	2 cut(s)	450, 472
BmrI	ACTGGG	2 cut(s)	86, 277
BmsI	GCATC	1 cut(s)	214
BmuI	ACTGGG	2 cut(s)	86, 277
BpiI	GAAGAC	1 cut(s)	645
BpmI	CTGGAG	2 cut(s)	251, 278
BpuMI	CCSGG	1 cut(s)	472
Bsa29I	ATCGAT	1 cut(s)	717
BsaJI	CCNNGG	2 cut(s)	86, 471
Bsc4I	CCNNNNNNNGG	4 cut(s)	92, 455, 690, 691
Bse1I	ACTGG	4 cut(s)	81, 106, 225, 272
Bse3DI	GCAATG	1 cut(s)	802
BseBI	CCWGG	1 cut(s)	450
BseCI	ATCGAT	1 cut(s)	717
BseDI	CCNNGG	2 cut(s)	86, 471
BseGI	GGATG	2 cut(s)	229, 467
BseLI	CCNNNNNNNGG	4 cut(s)	92, 455, 690, 691
BseMI	GCAATG	1 cut(s)	802
BseNI	ACTGG	4 cut(s)	81, 106, 225, 272
BseRI	GAGGAG	1 cut(s)	198
BseSI	GKGCMC	1 cut(s)	83
BseXI	GCAGC	3 cut(s)	37, 391, 529
BsgI	GTGCAG	1 cut(s)	390
BshFI	GGCC	3 cut(s)	81, 96, 466
BshVI	ATCGAT	1 cut(s)	717
BsiSI	CCGG	1 cut(s)	471
BslI	CCNNNNNNNGG	4 cut(s)	92, 455, 690, 691
BsmAI	GTCTC	2 cut(s)	142, 245
BsnI	GGCC	3 cut(s)	81, 96, 466
Bsp120I	GGGCCC	1 cut(s)	79
Bsp1286I	GDGCHC	1 cut(s)	83
Bsp143I	GATC	2 cut(s)	113, 411
BspACI	CCGC	3 cut(s)	236, 545, 704
BspANI	GGCC	3 cut(s)	81, 96, 466
BspDI	ATCGAT	1 cut(s)	717
BspLI	GGNNCC	4 cut(s)	81, 234, 322, 419
BspPI	GGATC	1 cut(s)	121
BsrBI	CCGCTC	1 cut(s)	706
BsrDI	GCAATG	1 cut(s)	802
BsrI	ACTGG	4 cut(s)	81, 106, 225, 272
BssECI	CCNNGG	2 cut(s)	86, 471
BssMI	GATC	2 cut(s)	113, 411
Bst2UI	CCWGG	1 cut(s)	450
Bst4CI	ACNGT	2 cut(s)	87, 555
Bst6I	CTCTTC	1 cut(s)	656
BstC8I	GCNNGC	2 cut(s)	128, 579
BstDSI	CCRYGG	1 cut(s)	86
BstF5I	GGATG	2 cut(s)	229, 467
BstHHI	GCGC	3 cut(s)	55, 74, 229
BstKTI	GATC	2 cut(s)	116, 414
BstMAI	GTCTC	2 cut(s)	142, 245
BstMBI	GATC	2 cut(s)	113, 411
BstMWI	GCNNNNNNNGC	6 cut(s)	20, 61, 78, 235, 578, 587
BstNI	CCWGG	1 cut(s)	450
BstSCI	CCNGG	2 cut(s)	448, 470
BstSLI	GKGCMC	1 cut(s)	83
BstV1I	GCAGC	3 cut(s)	37, 391, 529
BstV2I	GAAGAC	1 cut(s)	645
BstX2I	RGATCY	1 cut(s)	411
BstYI	RGATCY	1 cut(s)	411
Bsu15I	ATCGAT	1 cut(s)	717
BsuRI	GGCC	3 cut(s)	81, 96, 466
BsuTUI	ATCGAT	1 cut(s)	717
BtgI	CCRYGG	1 cut(s)	86
BtsCI	GGATG	2 cut(s)	229, 467
BtsIMutI	CAGTG	4 cut(s)	74, 99, 218, 265
Cac8I	GCNNGC	2 cut(s)	128, 579
CfoI	GCGC	3 cut(s)	55, 74, 229
Cfr13I	GGNCC	2 cut(s)	79, 80
ClaI	ATCGAT	1 cut(s)	717
CsiI	ACCWGGT	1 cut(s)	448
Csp6I	GTAC	1 cut(s)	17
CviAII	CATG	3 cut(s)	422, 442, 756
CviQI	GTAC	1 cut(s)	17
DpnI	GATC	2 cut(s)	115, 413
DpnII	GATC	2 cut(s)	113, 411
Eam1104I	CTCTTC	1 cut(s)	656
EarI	CTCTTC	1 cut(s)	656
Eco147I	AGGCCT	1 cut(s)	96
Eco24I	GRGCYC	1 cut(s)	83
Eco57I	CTGAAG	1 cut(s)	221
EcoRII	CCWGG	1 cut(s)	448
EcoT38I	GRGCYC	1 cut(s)	83
FaeI	CATG	3 cut(s)	425, 445, 759
FatI	CATG	3 cut(s)	421, 441, 755
FauNDI	CATATG	1 cut(s)	240
Fnu4HI	GCNGC	5 cut(s)	51, 236, 405, 543, 546
FokI	GGATG	2 cut(s)	236, 454
FriOI	GRGCYC	1 cut(s)	83
Fsp4HI	GCNGC	5 cut(s)	51, 236, 405, 543, 546
FspBI	CTAG	3 cut(s)	20, 329, 482
FspI	TGCGCA	1 cut(s)	73
GlaI	GCGC	3 cut(s)	54, 73, 228
GluI	GCNGC	5 cut(s)	51, 236, 405, 543, 546
GsuI	CTGGAG	2 cut(s)	251, 278
HaeIII	GGCC	3 cut(s)	81, 96, 466
HapII	CCGG	1 cut(s)	471
HhaI	GCGC	3 cut(s)	55, 74, 229
Hin1II	CATG	3 cut(s)	425, 445, 759
Hin6I	GCGC	3 cut(s)	53, 72, 227
HinP1I	GCGC	3 cut(s)	53, 72, 227
HindIII	AAGCTT	1 cut(s)	124
HinfI	GANTC	4 cut(s)	253, 437, 519, 664
HpaII	CCGG	1 cut(s)	471
HphI	GGTGA	2 cut(s)	108, 670
Hpy166II	GTNNAC	1 cut(s)	679
Hpy188I	TCNGA	1 cut(s)	762
Hpy188III	TCNNGA	3 cut(s)	257, 415, 482
Hpy8I	GTNNAC	1 cut(s)	679
HpyAV	CCTTC	3 cut(s)	129, 311, 456
HpyCH4III	ACNGT	2 cut(s)	87, 555
HpyCH4V	TGCA	5 cut(s)	156, 407, 581, 614, 674
HpyF10VI	GCNNNNNNNGC	6 cut(s)	20, 61, 78, 235, 578, 587
Hsp92II	CATG	3 cut(s)	425, 445, 759
HspAI	GCGC	3 cut(s)	53, 72, 227
Kzo9I	GATC	2 cut(s)	113, 411
LmnI	GCTCC	2 cut(s)	232, 711
Lsp1109I	GCAGC	3 cut(s)	37, 391, 529
LweI	GCATC	1 cut(s)	214
MabI	ACCWGGT	1 cut(s)	448
MaeI	CTAG	3 cut(s)	20, 329, 482
MalI	GATC	2 cut(s)	115, 413
MbiI	CCGCTC	1 cut(s)	706
MboI	GATC	2 cut(s)	113, 411
MboII	GAAGA	4 cut(s)	359, 421, 650, 673
MflI	RGATCY	1 cut(s)	411
MhlI	GDGCHC	1 cut(s)	83
MluCI	AATT	5 cut(s)	58, 191, 335, 489, 738
MlyI	GAGTC	3 cut(s)	247, 446, 673
MmeI	TCCRAC	2 cut(s)	324, 653
MnlI	CCTC	5 cut(s)	107, 216, 219, 452, 721
MseI	TTAA	1 cut(s)	492
MspI	CCGG	1 cut(s)	471
MspR9I	CCNGG	2 cut(s)	450, 472
MvaI	CCWGG	1 cut(s)	450
MwoI	GCNNNNNNNGC	6 cut(s)	20, 61, 78, 235, 578, 587
NciI	CCSGG	1 cut(s)	472
NdeI	CATATG	1 cut(s)	240
NdeII	GATC	2 cut(s)	113, 411
NlaIII	CATG	3 cut(s)	425, 445, 759
NlaIV	GGNNCC	4 cut(s)	81, 234, 322, 419
NsbI	TGCGCA	1 cut(s)	73
PceI	AGGCCT	1 cut(s)	96
PcsI	WCGNNNNNNNCGW	1 cut(s)	321
PfeI	GAWTC	1 cut(s)	519
PflMI	CCANNNNNTGG	1 cut(s)	455
PkrI	GCNGC	5 cut(s)	52, 237, 406, 544, 547
PleI	GAGTC	3 cut(s)	247, 445, 672
PpsI	GAGTC	3 cut(s)	247, 445, 672
PshBI	ATTAAT	1 cut(s)	492
Psp6I	CCWGG	1 cut(s)	448
PspGI	CCWGG	1 cut(s)	448
PspN4I	GGNNCC	4 cut(s)	81, 234, 322, 419
PspOMI	GGGCCC	1 cut(s)	79
PspPI	GGNCC	2 cut(s)	79, 80
PsuI	RGATCY	1 cut(s)	411
RsaI	GTAC	1 cut(s)	18
RsaNI	GTAC	1 cut(s)	17
SaqAI	TTAA	1 cut(s)	492
SatI	GCNGC	5 cut(s)	51, 236, 405, 543, 546
Sau3AI	GATC	2 cut(s)	113, 411
Sau96I	GGNCC	2 cut(s)	79, 80
ScaI	AGTACT	1 cut(s)	18
SchI	GAGTC	3 cut(s)	247, 446, 673
ScrFI	CCNGG	2 cut(s)	450, 472
SduI	GDGCHC	1 cut(s)	83
SexAI	ACCWGGT	1 cut(s)	448
SfaNI	GCATC	1 cut(s)	214
Sse9I	AATT	5 cut(s)	58, 191, 335, 489, 738
SseBI	AGGCCT	1 cut(s)	96
SsiI	CCGC	3 cut(s)	236, 545, 704
SspMI	CTAG	3 cut(s)	20, 329, 482
StuI	AGGCCT	1 cut(s)	96
StyD4I	CCNGG	2 cut(s)	448, 470
TaaI	ACNGT	2 cut(s)	87, 555
TaqI	TCGA	2 cut(s)	315, 717
TasI	AATT	5 cut(s)	58, 191, 335, 489, 738
TatI	WGTACW	1 cut(s)	16
TauI	GCSGC	2 cut(s)	238, 548
TfiI	GAWTC	1 cut(s)	519
Tru1I	TTAA	1 cut(s)	492
Tru9I	TTAA	1 cut(s)	492
TscAI	CASTG	4 cut(s)	81, 106, 225, 272
TseI	GCWGC	3 cut(s)	50, 404, 542
TspDTI	ATGAA	4 cut(s)	348, 458, 511, 744
TspGWI	ACGGA	1 cut(s)	390
TspRI	CASTG	4 cut(s)	81, 106, 225, 272
Van91I	CCANNNNNTGG	1 cut(s)	455
VspI	ATTAAT	1 cut(s)	492
XapI	RAATTY	1 cut(s)	191
XbaI	TCTAGA	1 cut(s)	481
XspI	CTAG	3 cut(s)	20, 329, 482
ZrmI	AGTACT	1 cut(s)	18

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.