Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0004674

Physical Location & Seq

Genomic Coordinates Forward (+)

61868821 .. 61872139

Gene Structure 3319 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G033930.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGTTCAATTATGTTGTTACTCCCTCCTTTCTACGTGGCTCTCTTCTTGTCCAAAAACTGAATTGGGAGAGAATTGAATCGAAAGCTGGTTCAAGTAGTATCTGTGCCAAATTTGAGCTGAAGCCTCCTCCATATCCACTGGATGCGCTGGAGCCGCATATGAGCAAGGAGACTCTGGAGTATCACTGGGGGAAGCACCATAGGGGTTATGTGGATAACCTAAACAAGCAAATCGAAGGAACTGAGCTAGATGAATTGTCGTTGGAAGATATTATACTTGCTACACACAACAACGGAGATTTGCTTCCACCTTTCAACAATGCTGCACAGAGATTTTGTTCTTTTGAGAGATTCATTGATGATATAAGGTTGGCTGCGGCTACACAGTTTGGTTCTGGTTGGGCTTGGCTTGCATATAAAGCAAATAGACTTGATGTTGAAAATGCAGTAAATCCTAATCCAACGGACGAAGACAAAAGGCTTGTAGTGGTGAAGAGTCCTAATGCTGTAAACCCCCTTATATGGCATTATTCTCCGCTCCTTACCATCGATGTTTGGGAGCATGCTTACTACCTCGATGTTCAGAACCGGCGAGCTGATTACATATCATTCTTTTTGGAGAAACTTGTTTCATGGGAAGCAGTCAGTTCTAGACTTGAAATTGCAAAGGCTCGAGCTGTTGAAAGAGAGGAAGAAGAAGAAAGGAGGAAAAGAGAAGAAGAGGAGAAATCATCAGATGGCGAAGTTGCAGAGATTTATGTGGACAACAAGAGCGATGACTCGGAGGCTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0000303 GO:0000305 GO:0003674 GO:0003824 GO:0004784 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006801 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009295 GO:0009314 GO:0009411 GO:0009416 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009636 GO:0009987 GO:0010035 GO:0016209 GO:0016491 GO:0016721 GO:0019430 GO:0033554 GO:0034599 GO:0034614 GO:0042221 GO:0042644 GO:0042646 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0071450 GO:0071451 GO:0072593 GO:0097237 GO:0098754 GO:0098869 GO:1901700 GO:1901701 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04013 ko04068 ko04146 ko04211 ko04212 ko04213 ko05016 map04013 map04068 map04146 map04211 map04212 map04213 map05016

Pfam Domains

Protein Families

Sod_Fe_C Sod_Fe_N

Protein Analysis

264

Amino Acids

30.47

Weight (kDa)

4.9

Isoelectric Point (pI)

49.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sod_Fe_N	PF00081	37 - 96	9e-19	Iron/manganese superoxide dismutases, alpha-hairpin domain
Sod_Fe_C	PF02777	109 - 218	1.5e-24	Iron/manganese superoxide dismutases, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004674)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00651 AT4G25100 AT4G25100 AT4G25100 AT4G25100 AT4G25100 AT5G51100 AT5G51100 AT5G51100 AT5G51100 AT5G51100 AT5G51100
fragaria_vesca	FvH4_7g26501 FvH4_7g26501
malus_domestica	MD01G1173700.v1.1 MD07G1240700.v1.1
prunus_persica	Prupe.2G269400_v2.0.a1 Prupe.2G269400_v2.0.a1
pyrus_communis	pycom01g18560 pycom07g21700
rosa_chinensis	RchiOBHm_Chr1g0373101
rosa_laevigata	RLG00000026848
rosa_multiflora	Rmu_sc0002004.1_g000002
rosa_roxburghii	Rroxscaffold_4G00284450
rosa_rugosa	Rorug01G0376300 Rorug04G0079400
rosa_samantha	Rh1AG384700 Rh1BG348600 Rh1CG362000 Rh1DG379500
rosa_wichuraiana	Rw1G033930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	538
AciI	CCGC	3 cut(s)	155, 377, 536
AcsI	RAATTY	1 cut(s)	110
AcuI	CTGAAG	1 cut(s)	140
AfiI	CCNNNNNNNGG	1 cut(s)	522
AgsI	TTSAA	7 cut(s)	7, 77, 93, 316, 440, 659, 683
AluBI	AGCT	5 cut(s)	86, 118, 247, 596, 677
AluI	AGCT	5 cut(s)	86, 118, 247, 596, 677
Alw26I	GTCTC	1 cut(s)	164
Ama87I	CYCGRG	1 cut(s)	672
ApeKI	GCWGC	2 cut(s)	323, 374
ApoI	RAATTY	1 cut(s)	110
AspLEI	GCGC	1 cut(s)	148
AsuHPI	GGTGA	1 cut(s)	502
AvaI	CYCGRG	1 cut(s)	672
BarI	GAAGNNNNNNTAC	2 cut(s)	258, 290
BbsI	GAAGAC	1 cut(s)	477
BbvI	GCAGC	2 cut(s)	310, 361
BccI	CCATC	2 cut(s)	554, 731
BcoDI	GTCTC	1 cut(s)	164
BfaI	CTAG	2 cut(s)	248, 651
BisI	GCNGC	4 cut(s)	155, 324, 375, 378
BlsI	GCNGC	4 cut(s)	156, 325, 376, 379
BmeT110I	CYCGRG	1 cut(s)	672
BmiI	GGNNCC	1 cut(s)	153
BmrI	ACTGGG	1 cut(s)	196
BmsI	GCATC	1 cut(s)	133
BmuI	ACTGGG	1 cut(s)	196
BpiI	GAAGAC	1 cut(s)	477
BpmI	CTGGAG	2 cut(s)	170, 197
Bsa29I	ATCGAT	1 cut(s)	549
BsaAI	YACGTR	1 cut(s)	35
Bsc4I	CCNNNNNNNGG	1 cut(s)	522
Bse118I	RCCGGY	1 cut(s)	588
Bse1I	ACTGG	2 cut(s)	144, 191
BseCI	ATCGAT	1 cut(s)	549
BseGI	GGATG	1 cut(s)	148
BseLI	CCNNNNNNNGG	1 cut(s)	522
BseMII	CTCAG	1 cut(s)	234
BseNI	ACTGG	2 cut(s)	144, 191
BseRI	GAGGAG	2 cut(s)	117, 737
BseXI	GCAGC	2 cut(s)	310, 361
BsgI	GTGCAG	1 cut(s)	309
BshVI	ATCGAT	1 cut(s)	549
BsiHKCI	CYCGRG	1 cut(s)	672
BsiSI	CCGG	1 cut(s)	589
BslI	CCNNNNNNNGG	1 cut(s)	522
BsmAI	GTCTC	1 cut(s)	164
BsoBI	CYCGRG	1 cut(s)	672
BspACI	CCGC	3 cut(s)	155, 377, 536
BspCNI	CTCAG	1 cut(s)	235
BspDI	ATCGAT	1 cut(s)	549
BspLI	GGNNCC	1 cut(s)	153
BsrBI	CCGCTC	1 cut(s)	538
BsrFI	RCCGGY	1 cut(s)	588
BsrI	ACTGG	2 cut(s)	144, 191
BssAI	RCCGGY	1 cut(s)	588
Bst4CI	ACNGT	1 cut(s)	387
Bst6I	CTCTTC	3 cut(s)	48, 488, 714
BstBAI	YACGTR	1 cut(s)	35
BstC8I	GCNNGC	3 cut(s)	411, 564, 594
BstDEI	CTNAG	1 cut(s)	243
BstF5I	GGATG	1 cut(s)	148
BstHHI	GCGC	1 cut(s)	148
BstMAI	GTCTC	1 cut(s)	164
BstMWI	GCNNNNNNNGC	3 cut(s)	154, 410, 419
BstNSI	RCATGY	1 cut(s)	566
BstV1I	GCAGC	2 cut(s)	310, 361
BstV2I	GAAGAC	1 cut(s)	477
Bsu15I	ATCGAT	1 cut(s)	549
BsuTUI	ATCGAT	1 cut(s)	549
BtgZI	GCGATG	1 cut(s)	789
BtsCI	GGATG	1 cut(s)	148
BtsIMutI	CAGTG	2 cut(s)	137, 184
Cac8I	GCNNGC	3 cut(s)	411, 564, 594
CfoI	GCGC	1 cut(s)	148
Cfr10I	RCCGGY	1 cut(s)	588
ClaI	ATCGAT	1 cut(s)	549
CviAII	CATG	2 cut(s)	563, 633
DdeI	CTNAG	1 cut(s)	243
Eam1104I	CTCTTC	3 cut(s)	48, 488, 714
EarI	CTCTTC	3 cut(s)	48, 488, 714
Eco57I	CTGAAG	1 cut(s)	140
Eco88I	CYCGRG	1 cut(s)	672
FaeI	CATG	2 cut(s)	566, 636
FatI	CATG	2 cut(s)	562, 632
FauNDI	CATATG	1 cut(s)	159
Fnu4HI	GCNGC	4 cut(s)	155, 324, 375, 378
FokI	GGATG	1 cut(s)	155
Fsp4HI	GCNGC	4 cut(s)	155, 324, 375, 378
FspBI	CTAG	2 cut(s)	248, 651
GlaI	GCGC	1 cut(s)	147
GluI	GCNGC	4 cut(s)	155, 324, 375, 378
GsuI	CTGGAG	2 cut(s)	170, 197
HapII	CCGG	1 cut(s)	589
HhaI	GCGC	1 cut(s)	148
Hin1II	CATG	2 cut(s)	566, 636
Hin6I	GCGC	1 cut(s)	146
HinP1I	GCGC	1 cut(s)	146
HinfI	GANTC	5 cut(s)	77, 172, 351, 496, 779
HpaII	CCGG	1 cut(s)	589
HphI	GGTGA	1 cut(s)	502
Hpy166II	GTNNAC	2 cut(s)	511, 763
Hpy188I	TCNGA	3 cut(s)	585, 736, 784
Hpy188III	TCNNGA	2 cut(s)	176, 651
Hpy8I	GTNNAC	2 cut(s)	511, 763
HpyAV	CCTTC	1 cut(s)	230
HpyCH4III	ACNGT	1 cut(s)	387
HpyCH4IV	ACGT	1 cut(s)	34
HpyCH4V	TGCA	5 cut(s)	326, 413, 446, 665, 749
HpyF10VI	GCNNNNNNNGC	3 cut(s)	154, 410, 419
HpyF3I	CTNAG	1 cut(s)	243
HpySE526I	ACGT	1 cut(s)	34
Hsp92II	CATG	2 cut(s)	566, 636
HspAI	GCGC	1 cut(s)	146
LmnI	GCTCC	3 cut(s)	151, 543, 559
LpnPI	CCDG	7 cut(s)	72, 125, 134, 161, 172, 381, 602
Lsp1109I	GCAGC	2 cut(s)	310, 361
LweI	GCATC	1 cut(s)	133
MaeI	CTAG	2 cut(s)	248, 651
MaeII	ACGT	1 cut(s)	34
MaeIII	GTNAC	1 cut(s)	16
MbiI	CCGCTC	1 cut(s)	538
MboII	GAAGA	9 cut(s)	35, 278, 482, 505, 704, 707, 710, 728, 731
MluCI	AATT	6 cut(s)	7, 61, 72, 110, 254, 660
MlyI	GAGTC	3 cut(s)	166, 505, 773
MmeI	TCCRAC	2 cut(s)	243, 485
MnlI	CCTC	8 cut(s)	34, 135, 138, 584, 682, 699, 715, 778
MspI	CCGG	1 cut(s)	589
MwoI	GCNNNNNNNGC	3 cut(s)	154, 410, 419
NdeI	CATATG	1 cut(s)	159
NlaIII	CATG	2 cut(s)	566, 636
NlaIV	GGNNCC	1 cut(s)	153
NspI	RCATGY	1 cut(s)	566
PaeI	GCATGC	1 cut(s)	566
PaeR7I	CTCGAG	1 cut(s)	672
PfeI	GAWTC	2 cut(s)	77, 351
PkrI	GCNGC	4 cut(s)	156, 325, 376, 379
PleI	GAGTC	3 cut(s)	166, 504, 773
PpsI	GAGTC	3 cut(s)	166, 504, 773
Ppu21I	YACGTR	1 cut(s)	35
PspN4I	GGNNCC	1 cut(s)	153
PspXI	VCTCGAGB	1 cut(s)	672
SatI	GCNGC	4 cut(s)	155, 324, 375, 378
SchI	GAGTC	3 cut(s)	166, 505, 773
SfaNI	GCATC	1 cut(s)	133
Sfr274I	CTCGAG	1 cut(s)	672
SlaI	CTCGAG	1 cut(s)	672
SmlI	CTYRAG	1 cut(s)	672
SmoI	CTYRAG	1 cut(s)	672
SphI	GCATGC	1 cut(s)	566
Sse9I	AATT	6 cut(s)	7, 61, 72, 110, 254, 660
SsiI	CCGC	3 cut(s)	155, 377, 536
SspMI	CTAG	2 cut(s)	248, 651
TaaI	ACNGT	1 cut(s)	387
TaiI	ACGT	1 cut(s)	37
TaqI	TCGA	5 cut(s)	80, 234, 549, 576, 673
TasI	AATT	6 cut(s)	7, 61, 72, 110, 254, 660
TauI	GCSGC	2 cut(s)	157, 380
TfiI	GAWTC	2 cut(s)	77, 351
TscAI	CASTG	2 cut(s)	144, 191
TseI	GCWGC	2 cut(s)	323, 374
TspDTI	ATGAA	3 cut(s)	267, 343, 621
TspGWI	ACGGA	2 cut(s)	309, 479
TspRI	CASTG	2 cut(s)	144, 191
XapI	RAATTY	1 cut(s)	110
XbaI	TCTAGA	1 cut(s)	650
XceI	RCATGY	1 cut(s)	566
XhoI	CTCGAG	1 cut(s)	672
XspI	CTAG	2 cut(s)	248, 651

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.