MD07G1240700.v1.1

Superoxide dismutase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
Physical Location & Seq
Forward (+)
31204105 .. 31207040
2936 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1240700.v1.1.491

Sequence Viewer

Length: 960 bp
ATGGTAGCACCGGTTGCGGTTGCAGCGGCAGTAACAACAGCGCTAGGCACGCCTAGTTCGCTAACCAGCGCACTGGGTCCGTCATGGCAAGGGCTCCACGGAAGTCTGGGAACAGCTCGAAGATTGCAATGGCCAAAGAAACAGAGACAATACAGAAGGAAAGTCGGCGCCATTGGTATTAGGGCACAATTTGAGCTGAAGCCTCCTCCATATCCACTGGATGCATTGGAGCCGCATATGAGCAAGGAGACGTTAGAATATCACTGGGGGAAGCACCATAGAGGTTATGTGGATAACCTAAACAAGTTGATAGCGGGAACTGAACTAAATGAATTGTCGTTGGAGGATATCATACTTGCTACATACAACAAGGGGGATCTGCTCCCCCCTTTCAACCAGGCAGCGCAGATCTGGAACCATGACTTCTTCTGGGAATCTATGAAACCAGGTGGCGGGGGAAAACCATCCGGGGAACTTCTAGAACTAATTAATAGAGACTTTGGTTCTTTTGAGAGATTGATTGACGACTTAAGGTCAGCTGCAAGTACACAGTTTGGCTCTGGCTGGGCTTGGCTTGCATATAAAGCGAATAGACTTGATGTTGGAAACGCAGTAAATCCTAAGCCATCTGATGAAGACAAGAAGCTTGTAGTGGTGAAGAGTCCTAATGCCGTTAACCCCCTTATTTGGGATTATACTCCGCTCCTTACTATCGATGTTTGGGAGCATGCTTACTACCTCGATTTTCAGAACCGGCGAGTAGATTACATATCAATCTTCCTGGAGAAACTCGTATCATGGGAAGCGGTCAGTTCTAGGCTTGAAATGGCAAAGGCTCGAGCTACTGAAAGAGAGGAAGAAGAAGAGAAGAAGAAAAGAGAGGAGGAGGAGAAGACATTAGACGGCGAAGTTCCAGAGATTTATGTGGACAACAAGAGCGATGACTCAGAGACCGAATGA

Protein Analysis

320

Amino Acids

36.08

Weight (kDa)

5.36

Isoelectric Point (pI)

40.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sod_Fe_N PF00081 63 - 147 8.6e-25 Iron/manganese superoxide dismutases, alpha-hairpin domain
Sod_Fe_C PF02777 155 - 273 2.6e-29 Iron/manganese superoxide dismutases, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 167
AccBSI CCGCTC 1 cut(s) 703
AciI CCGC 7 cut(s) 17, 26, 233, 314, 453, 701, 806
AclWI GGATC 1 cut(s) 384
AcoI YGGCCR 1 cut(s) 131
AcuI CTGAAG 1 cut(s) 218
AcyI GRCGYC 1 cut(s) 168
AfaI GTAC 1 cut(s) 547
AfeI AGCGCT 1 cut(s) 42
AfiI CCNNNNNNNGG 3 cut(s) 452, 687, 688
AflII CTTAAG 1 cut(s) 529
AgeI ACCGGT 1 cut(s) 10
AgsI TTSAA 2 cut(s) 394, 824
AhdI GACNNNNNGTC 1 cut(s) 532
AjnI CCWGG 3 cut(s) 396, 445, 780
AluBI AGCT 5 cut(s) 116, 196, 539, 646, 842
AluI AGCT 5 cut(s) 116, 196, 539, 646, 842
Alw26I GTCTC 4 cut(s) 139, 242, 489, 944
AlwI GGATC 1 cut(s) 384
Ama87I CYCGRG 1 cut(s) 837
Aor51HI AGCGCT 1 cut(s) 42
AoxI GGCC 1 cut(s) 131
ApeKI GCWGC 3 cut(s) 23, 401, 539
AseI ATTAAT 1 cut(s) 489
AsiGI ACCGGT 1 cut(s) 10
AspLEI GCGC 4 cut(s) 43, 71, 170, 406
AspS9I GGNCC 1 cut(s) 77
AsuC2I CCSGG 1 cut(s) 469
AsuHPI GGTGA 1 cut(s) 667
AvaI CYCGRG 1 cut(s) 837
AvaII GGWCC 1 cut(s) 77
BaeGI GKGCMC 1 cut(s) 187
BalI TGGCCA 1 cut(s) 133
BanI GGYRCC 1 cut(s) 167
BanII GRGCYC 1 cut(s) 96
BbsI GAAGAC 2 cut(s) 642, 899
BbvI GCAGC 3 cut(s) 35, 413, 526
BccI CCATC 2 cut(s) 472, 634
BceAI ACGGC 2 cut(s) 656, 919
BciT130I CCWGG 3 cut(s) 398, 447, 782
BcnI CCSGG 1 cut(s) 469
BcoDI GTCTC 4 cut(s) 139, 242, 489, 944
BfaI CTAG 4 cut(s) 44, 54, 479, 816
BfoI RGCGCY 2 cut(s) 44, 171
BfrI CTTAAG 1 cut(s) 529
BglII AGATCT 1 cut(s) 408
BisI GCNGC 5 cut(s) 24, 27, 233, 402, 540
BlsI GCNGC 5 cut(s) 25, 28, 234, 403, 541
Bme1390I CCNGG 4 cut(s) 398, 447, 469, 782
Bme18I GGWCC 1 cut(s) 77
BmeRI GACNNNNNGTC 1 cut(s) 532
BmeT110I CYCGRG 1 cut(s) 837
BmgT120I GGNCC 1 cut(s) 77
BmiI GGNNCC 5 cut(s) 78, 95, 169, 231, 416
BmrFI CCNGG 4 cut(s) 398, 447, 469, 782
BmrI ACTGGG 2 cut(s) 83, 274
BmsI GCATC 1 cut(s) 211
BmuI ACTGGG 2 cut(s) 83, 274
BpiI GAAGAC 2 cut(s) 642, 899
BpmI CTGGAG 1 cut(s) 803
Bpu10I CCTNAGC 1 cut(s) 621
BpuMI CCSGG 1 cut(s) 469
Bsa29I ATCGAT 1 cut(s) 714
BsaHI GRCGYC 1 cut(s) 168
BsaI GGTCTC 1 cut(s) 944
BsaJI CCNNGG 2 cut(s) 97, 468
BsaWI WCCGGW 1 cut(s) 10
Bsc4I CCNNNNNNNGG 3 cut(s) 452, 687, 688
Bse118I RCCGGY 2 cut(s) 10, 753
Bse1I ACTGG 3 cut(s) 78, 222, 269
Bse3DI GCAATG 1 cut(s) 134
BseBI CCWGG 3 cut(s) 398, 447, 782
BseCI ATCGAT 1 cut(s) 714
BseDI CCNNGG 2 cut(s) 97, 468
BseGI GGATG 2 cut(s) 226, 464
BseLI CCNNNNNNNGG 3 cut(s) 452, 687, 688
BseMI GCAATG 1 cut(s) 134
BseMII CTCAG 1 cut(s) 960
BseNI ACTGG 3 cut(s) 78, 222, 269
BseRI GAGGAG 4 cut(s) 195, 896, 899, 902
BseSI GKGCMC 1 cut(s) 187
BseXI GCAGC 3 cut(s) 35, 413, 526
BseYI CCCAGC 1 cut(s) 564
BshFI GGCC 1 cut(s) 133
BshNI GGYRCC 1 cut(s) 167
BshTI ACCGGT 1 cut(s) 10
BshVI ATCGAT 1 cut(s) 714
BsiHKCI CYCGRG 1 cut(s) 837
BsiSI CCGG 3 cut(s) 11, 468, 754
BslI CCNNNNNNNGG 3 cut(s) 452, 687, 688
BsmAI GTCTC 4 cut(s) 139, 242, 489, 944
BsmBI CGTCTC 1 cut(s) 242
BsnI GGCC 1 cut(s) 133
Bso31I GGTCTC 1 cut(s) 944
BsoBI CYCGRG 1 cut(s) 837
Bsp1286I GDGCHC 2 cut(s) 96, 187
Bsp143I GATC 2 cut(s) 376, 408
BspACI CCGC 7 cut(s) 17, 26, 233, 314, 453, 701, 806
BspANI GGCC 1 cut(s) 133
BspCNI CTCAG 1 cut(s) 959
BspDI ATCGAT 1 cut(s) 714
BspLI GGNNCC 5 cut(s) 78, 95, 169, 231, 416
BspPI GGATC 1 cut(s) 384
BspT107I GGYRCC 1 cut(s) 167
BspTI CTTAAG 1 cut(s) 529
BspTNI GGTCTC 1 cut(s) 944
BsrBI CCGCTC 1 cut(s) 703
BsrDI GCAATG 1 cut(s) 134
BsrFI RCCGGY 2 cut(s) 10, 753
BsrI ACTGG 3 cut(s) 78, 222, 269
BssAI RCCGGY 2 cut(s) 10, 753
BssECI CCNNGG 2 cut(s) 97, 468
BssMI GATC 2 cut(s) 376, 408
BssNI GRCGYC 1 cut(s) 168
Bst2UI CCWGG 3 cut(s) 398, 447, 782
Bst4CI ACNGT 1 cut(s) 552
Bst6I CTCTTC 2 cut(s) 653, 858
BstACI GRCGYC 1 cut(s) 168
BstAFI CTTAAG 1 cut(s) 529
BstAPI GCANNNNNTGC 1 cut(s) 14
BstC8I GCNNGC 3 cut(s) 50, 576, 729
BstDEI CTNAG 2 cut(s) 621, 946
BstDSI CCRYGG 1 cut(s) 97
BstF5I GGATG 2 cut(s) 226, 464
BstH2I RGCGCY 2 cut(s) 44, 171
BstHHI GCGC 4 cut(s) 43, 71, 170, 406
BstKTI GATC 2 cut(s) 379, 411
BstMAI GTCTC 4 cut(s) 139, 242, 489, 944
BstMBI GATC 2 cut(s) 376, 408
BstMWI GCNNNNNNNGC 6 cut(s) 14, 23, 49, 58, 575, 584
BstNI CCWGG 3 cut(s) 398, 447, 782
BstNSI RCATGY 1 cut(s) 731
BstSCI CCNGG 4 cut(s) 396, 445, 467, 780
BstSLI GKGCMC 1 cut(s) 187
BstV1I GCAGC 3 cut(s) 35, 413, 526
BstV2I GAAGAC 2 cut(s) 642, 899
BstX2I RGATCY 2 cut(s) 376, 408
BstXI CCANNNNNNTGG 1 cut(s) 73
BstYI RGATCY 2 cut(s) 376, 408
Bsu15I ATCGAT 1 cut(s) 714
BsuRI GGCC 1 cut(s) 133
BsuTUI ATCGAT 1 cut(s) 714
BtgI CCRYGG 1 cut(s) 97
BtgZI GCGATG 1 cut(s) 954
BtsCI GGATG 2 cut(s) 226, 464
BtsIMutI CAGTG 3 cut(s) 71, 215, 262
Cac8I GCNNGC 3 cut(s) 50, 576, 729
CfoI GCGC 4 cut(s) 43, 71, 170, 406
Cfr10I RCCGGY 2 cut(s) 10, 753
Cfr13I GGNCC 1 cut(s) 77
ClaI ATCGAT 1 cut(s) 714
CsiI ACCWGGT 1 cut(s) 445
Csp6I GTAC 1 cut(s) 546
CspAI ACCGGT 1 cut(s) 10
CviAII CATG 4 cut(s) 84, 419, 728, 798
CviQI GTAC 1 cut(s) 546
DdeI CTNAG 2 cut(s) 621, 946
DinI GGCGCC 1 cut(s) 169
DpnI GATC 2 cut(s) 378, 410
DpnII GATC 2 cut(s) 376, 408
DriI GACNNNNNGTC 1 cut(s) 532
EaeI YGGCCR 1 cut(s) 131
Eam1104I CTCTTC 2 cut(s) 653, 858
Eam1105I GACNNNNNGTC 1 cut(s) 532
EarI CTCTTC 2 cut(s) 653, 858
Eco24I GRGCYC 1 cut(s) 96
Eco31I GGTCTC 1 cut(s) 944
Eco32I GATATC 1 cut(s) 349
Eco47I GGWCC 1 cut(s) 77
Eco47III AGCGCT 1 cut(s) 42
Eco57I CTGAAG 1 cut(s) 218
Eco88I CYCGRG 1 cut(s) 837
EcoRII CCWGG 3 cut(s) 396, 445, 780
EcoRV GATATC 1 cut(s) 349
EcoT22I ATGCAT 1 cut(s) 226
EcoT38I GRGCYC 1 cut(s) 96
EgeI GGCGCC 1 cut(s) 169
EheI GGCGCC 1 cut(s) 169
Esp3I CGTCTC 1 cut(s) 242
FaeI CATG 4 cut(s) 87, 422, 731, 801
FatI CATG 4 cut(s) 83, 418, 727, 797
FauI CCCGC 2 cut(s) 307, 446
FauNDI CATATG 1 cut(s) 237
Fnu4HI GCNGC 5 cut(s) 24, 27, 233, 402, 540
FokI GGATG 2 cut(s) 233, 451
FriOI GRGCYC 1 cut(s) 96
Fsp4HI GCNGC 5 cut(s) 24, 27, 233, 402, 540
FspBI CTAG 4 cut(s) 44, 54, 479, 816
GlaI GCGC 4 cut(s) 42, 70, 169, 405
GluI GCNGC 5 cut(s) 24, 27, 233, 402, 540
GsaI CCCAGC 1 cut(s) 568
GsuI CTGGAG 1 cut(s) 803
HaeII RGCGCY 2 cut(s) 44, 171
HaeIII GGCC 1 cut(s) 133
HapII CCGG 3 cut(s) 11, 468, 754
HhaI GCGC 4 cut(s) 43, 71, 170, 406
Hin1I GRCGYC 1 cut(s) 168
Hin1II CATG 4 cut(s) 87, 422, 731, 801
Hin6I GCGC 4 cut(s) 41, 69, 168, 404
HinP1I GCGC 4 cut(s) 41, 69, 168, 404
HincII GTYRAC 1 cut(s) 676
HindII GTYRAC 1 cut(s) 676
HindIII AAGCTT 1 cut(s) 644
HinfI GANTC 3 cut(s) 434, 661, 944
HpaI GTTAAC 1 cut(s) 676
HpaII CCGG 3 cut(s) 11, 468, 754
HphI GGTGA 1 cut(s) 667
Hpy166II GTNNAC 3 cut(s) 548, 676, 928
Hpy188I TCNGA 3 cut(s) 631, 750, 949
Hpy188III TCNNGA 3 cut(s) 412, 479, 914
Hpy8I GTNNAC 3 cut(s) 548, 676, 928
HpyAV CCTTC 1 cut(s) 150
HpyCH4III ACNGT 1 cut(s) 552
HpyCH4IV ACGT 1 cut(s) 251
HpyCH4V TGCA 5 cut(s) 23, 127, 224, 542, 578
HpyF10VI GCNNNNNNNGC 6 cut(s) 14, 23, 49, 58, 575, 584
HpyF3I CTNAG 2 cut(s) 621, 946
HpySE526I ACGT 1 cut(s) 251
Hsp92I GRCGYC 1 cut(s) 168
Hsp92II CATG 4 cut(s) 87, 422, 731, 801
HspAI GCGC 4 cut(s) 41, 69, 168, 404
KasI GGCGCC 1 cut(s) 167
KspAI GTTAAC 1 cut(s) 676
Kzo9I GATC 2 cut(s) 376, 408
LmnI GCTCC 5 cut(s) 99, 229, 387, 708, 724
Lsp1109I GCAGC 3 cut(s) 35, 413, 526
LweI GCATC 1 cut(s) 211
MabI ACCWGGT 1 cut(s) 445
MaeI CTAG 4 cut(s) 44, 54, 479, 816
MaeII ACGT 1 cut(s) 251
MaeIII GTNAC 1 cut(s) 31
MalI GATC 2 cut(s) 378, 410
MbiI CCGCTC 1 cut(s) 703
MboI GATC 2 cut(s) 376, 408
MflI RGATCY 2 cut(s) 376, 408
MhlI GDGCHC 2 cut(s) 96, 187
MlsI TGGCCA 1 cut(s) 133
MluCI AATT 3 cut(s) 188, 332, 486
MluNI TGGCCA 1 cut(s) 133
Mly113I GGCGCC 1 cut(s) 168
MlyI GAGTC 2 cut(s) 670, 938
MmeI TCCRAC 2 cut(s) 321, 583
MnlI CCTC 9 cut(s) 213, 216, 275, 337, 749, 847, 874, 877, 880
Mox20I TGGCCA 1 cut(s) 133
Mph1103I ATGCAT 1 cut(s) 226
MscI TGGCCA 1 cut(s) 133
MseI TTAA 3 cut(s) 489, 530, 675
Msp20I TGGCCA 1 cut(s) 133
MspA1I CMGCKG 2 cut(s) 26, 539
MspCI CTTAAG 1 cut(s) 529
MspI CCGG 3 cut(s) 11, 468, 754
MspR9I CCNGG 4 cut(s) 398, 447, 469, 782
MvaI CCWGG 3 cut(s) 398, 447, 782
MwoI GCNNNNNNNGC 6 cut(s) 14, 23, 49, 58, 575, 584
NarI GGCGCC 1 cut(s) 168
NciI CCSGG 1 cut(s) 469
NdeI CATATG 1 cut(s) 237
NdeII GATC 2 cut(s) 376, 408
NlaIII CATG 4 cut(s) 87, 422, 731, 801
NlaIV GGNNCC 5 cut(s) 78, 95, 169, 231, 416
NsiI ATGCAT 1 cut(s) 226
NspI RCATGY 1 cut(s) 731
PaeI GCATGC 1 cut(s) 731
PaeR7I CTCGAG 1 cut(s) 837
PfeI GAWTC 1 cut(s) 434
PfoI TCCNGGA 1 cut(s) 780
PinAI ACCGGT 1 cut(s) 10
PkrI GCNGC 5 cut(s) 25, 28, 234, 403, 541
PleI GAGTC 2 cut(s) 669, 938
PluTI GGCGCC 1 cut(s) 171
PpsI GAGTC 2 cut(s) 669, 938
PshBI ATTAAT 1 cut(s) 489
Psp6I CCWGG 3 cut(s) 396, 445, 780
PspFI CCCAGC 1 cut(s) 564
PspGI CCWGG 3 cut(s) 396, 445, 780
PspN4I GGNNCC 5 cut(s) 78, 95, 169, 231, 416
PspPI GGNCC 1 cut(s) 77
PspXI VCTCGAGB 1 cut(s) 837
PsuI RGATCY 2 cut(s) 376, 408
PvuII CAGCTG 1 cut(s) 539
RsaI GTAC 1 cut(s) 547
RsaNI GTAC 1 cut(s) 546
SaqAI TTAA 3 cut(s) 489, 530, 675
SatI GCNGC 5 cut(s) 24, 27, 233, 402, 540
Sau3AI GATC 2 cut(s) 376, 408
Sau96I GGNCC 1 cut(s) 77
SchI GAGTC 2 cut(s) 670, 938
ScrFI CCNGG 4 cut(s) 398, 447, 469, 782
SduI GDGCHC 2 cut(s) 96, 187
SexAI ACCWGGT 1 cut(s) 445
SfaNI GCATC 1 cut(s) 211
SfoI GGCGCC 1 cut(s) 169
Sfr274I CTCGAG 1 cut(s) 837
SinI GGWCC 1 cut(s) 77
SlaI CTCGAG 1 cut(s) 837
SmlI CTYRAG 2 cut(s) 529, 837
SmoI CTYRAG 2 cut(s) 529, 837
SphI GCATGC 1 cut(s) 731
Sse9I AATT 3 cut(s) 188, 332, 486
SsiI CCGC 7 cut(s) 17, 26, 233, 314, 453, 701, 806
SspDI GGCGCC 1 cut(s) 167
SspMI CTAG 4 cut(s) 44, 54, 479, 816
StyD4I CCNGG 4 cut(s) 396, 445, 467, 780
TaaI ACNGT 1 cut(s) 552
TaiI ACGT 1 cut(s) 254
TaqI TCGA 4 cut(s) 118, 714, 741, 838
TasI AATT 3 cut(s) 188, 332, 486
TatI WGTACW 1 cut(s) 545
TauI GCSGC 2 cut(s) 29, 235
TfiI GAWTC 1 cut(s) 434
Tru1I TTAA 3 cut(s) 489, 530, 675
Tru9I TTAA 3 cut(s) 489, 530, 675
TscAI CASTG 3 cut(s) 78, 222, 269
TseI GCWGC 3 cut(s) 23, 401, 539
TspDTI ATGAA 3 cut(s) 345, 455, 648
TspGWI ACGGA 2 cut(s) 69, 114
TspRI CASTG 3 cut(s) 78, 222, 269
Vha464I CTTAAG 1 cut(s) 529
VpaK11BI GGWCC 1 cut(s) 77
VspI ATTAAT 1 cut(s) 489
XbaI TCTAGA 1 cut(s) 478
XceI RCATGY 1 cut(s) 731
XhoI CTCGAG 1 cut(s) 837
XspI CTAG 4 cut(s) 44, 54, 479, 816
Zsp2I ATGCAT 1 cut(s) 226
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.