Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0004674

Physical Location & Seq

Genomic Coordinates Forward (+)

17502018 .. 17504223

Gene Structure 2206 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g18560.8

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGGTAACACCAATCGGAGTTGCTGCAGCAGCAGCAACGGCACCCCAAGCTACGACTGGTCCGCTAACGTGCGCACTGGGTCCGTCCTGTCAAGGGCTCAGTGGAAGTCTGGGACCGGCTCGCAGTTTGCAATGGCCAAAGAAACAGAGAAAATGCAGAAGGAAAGTCGGTGCCATCGATATTAGGGCACAATTTGAGCTGAAGCCTCCTCCATATCCACTGGATGCATTGGAGCCGCATATGAGCAAGGAGACGTTAGAGTATCACTGGGGGAAGCACCATAGGGGTTATGTGGATAACCTAAACAAGTTGATAGCAGGAACAGAACTAGGTGAATTGTCATTGGAAGATGTCATACTTGCTACATACAACAAGGGGGATCTGCTCCCACCTTTCAATCAAGCAGCGCAGATCTGGAACCATGACTTCTTCTGGGAATCCATGAAACCAGGTGGCGGGGGAAAACCATCCGGGGAACTTCTAGAACTAATTAATAGAGACTTTGGTTCTTTTGAGAGATTGATTGACGATTTAAGGTCAGCTGCAACTACACAGTTGGGTTCTGGCTGGGCTTGGCTTGCATATAAAGCAAATAGACTTGATGTTGGAAATGCAGTAAATCCTAAGCCATCTGATGAAGACAAGAAGCTTGTAGTGGTGAAGAGTCCTAATGCCGTTAACCCGCTTATTTGGGATTATTCTCCACTCCTTACTATCGATGTTTGGGAGCATGCTTACTACCTCGATTTTCAGAACCGGCGAGCAGATTACTTATCAATCTTCATGGAGAAACTTGTATCGTGGGAAGCAGTCAGTTCTAGGCTTGAAATAGCAAAGGCTCGAGCTACTGAAAGAGAGGAAGAAGAGGAAAGGAAGACGAGAGAGGAGGAGGAGAAAACATCAGACGGTGAAGTTCCAGAGATTTATGTGGACAACAAGAGCGATGACTCAGAGACCGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0000303 GO:0000305 GO:0003674 GO:0003824 GO:0004784 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006801 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009295 GO:0009314 GO:0009411 GO:0009416 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009636 GO:0009987 GO:0010035 GO:0016209 GO:0016491 GO:0016721 GO:0019430 GO:0033554 GO:0034599 GO:0034614 GO:0042221 GO:0042644 GO:0042646 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0071450 GO:0071451 GO:0072593 GO:0097237 GO:0098754 GO:0098869 GO:1901700 GO:1901701 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04013 ko04068 ko04146 ko04211 ko04212 ko04213 ko05016 map04013 map04068 map04146 map04211 map04212 map04213 map05016

Pfam Domains

Protein Families

Sod_Fe_C Sod_Fe_N

Protein Analysis

321

Amino Acids

35.81

Weight (kDa)

5.15

Isoelectric Point (pI)

42.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004674)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00651 AT4G25100 AT4G25100 AT4G25100 AT4G25100 AT4G25100 AT5G51100 AT5G51100 AT5G51100 AT5G51100 AT5G51100 AT5G51100
fragaria_vesca	FvH4_7g26501 FvH4_7g26501
malus_domestica	MD01G1173700.v1.1 MD07G1240700.v1.1
prunus_persica	Prupe.2G269400_v2.0.a1 Prupe.2G269400_v2.0.a1
pyrus_communis	pycom01g18560 pycom07g21700
rosa_chinensis	RchiOBHm_Chr1g0373101
rosa_laevigata	RLG00000026848
rosa_multiflora	Rmu_sc0002004.1_g000002
rosa_roxburghii	Rroxscaffold_4G00284450
rosa_rugosa	Rorug01G0376300 Rorug04G0079400
rosa_samantha	Rh1AG384700 Rh1BG348600 Rh1CG362000 Rh1DG379500
rosa_wichuraiana	Rw1G033930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	73
AccB1I	GGYRCC	2 cut(s)	40, 170
AciI	CCGC	4 cut(s)	62, 236, 456, 683
AclWI	GGATC	1 cut(s)	387
AcoI	YGGCCR	1 cut(s)	134
AcuI	CTGAAG	1 cut(s)	221
AfiI	CCNNNNNNNGG	2 cut(s)	93, 455
AgsI	TTSAA	2 cut(s)	397, 827
AjnI	CCWGG	1 cut(s)	448
AluBI	AGCT	5 cut(s)	50, 199, 542, 649, 845
AluI	AGCT	5 cut(s)	50, 199, 542, 649, 845
Alw26I	GTCTC	3 cut(s)	245, 492, 947
AlwI	GGATC	1 cut(s)	387
Ama87I	CYCGRG	1 cut(s)	840
AoxI	GGCC	1 cut(s)	134
ApeKI	GCWGC	6 cut(s)	23, 26, 29, 32, 404, 542
AseI	ATTAAT	1 cut(s)	492
AspLEI	GCGC	2 cut(s)	74, 409
AspS9I	GGNCC	3 cut(s)	59, 80, 113
AsuC2I	CCSGG	1 cut(s)	472
AsuHPI	GGTGA	3 cut(s)	344, 670, 920
AvaI	CYCGRG	1 cut(s)	840
AvaII	GGWCC	3 cut(s)	59, 80, 113
BaeGI	GKGCMC	1 cut(s)	190
BalI	TGGCCA	1 cut(s)	136
BanI	GGYRCC	2 cut(s)	40, 170
BanII	GRGCYC	1 cut(s)	99
BarI	GAAGNNNNNNTAC	2 cut(s)	339, 371
BbsI	GAAGAC	2 cut(s)	645, 881
BbvI	GCAGC	6 cut(s)	10, 38, 41, 44, 416, 529
BccI	CCATC	3 cut(s)	182, 475, 637
BceAI	ACGGC	2 cut(s)	54, 659
BciT130I	CCWGG	1 cut(s)	450
BcnI	CCSGG	1 cut(s)	472
BcoDI	GTCTC	3 cut(s)	245, 492, 947
BfaI	CTAG	3 cut(s)	329, 482, 819
BfmI	CTRYAG	1 cut(s)	24
BglII	AGATCT	1 cut(s)	411
BisI	GCNGC	7 cut(s)	24, 27, 30, 33, 236, 405, 543
BlsI	GCNGC	7 cut(s)	25, 28, 31, 34, 237, 406, 544
Bme1390I	CCNGG	2 cut(s)	450, 472
Bme18I	GGWCC	3 cut(s)	59, 80, 113
BmeT110I	CYCGRG	1 cut(s)	840
BmgT120I	GGNCC	3 cut(s)	59, 80, 113
BmiI	GGNNCC	6 cut(s)	42, 81, 114, 172, 234, 419
BmrFI	CCNGG	2 cut(s)	450, 472
BmrI	ACTGGG	2 cut(s)	86, 277
BmsI	GCATC	1 cut(s)	214
BmuI	ACTGGG	2 cut(s)	86, 277
BpiI	GAAGAC	2 cut(s)	645, 881
Bpu10I	CCTNAGC	1 cut(s)	624
BpuMI	CCSGG	1 cut(s)	472
Bsa29I	ATCGAT	2 cut(s)	177, 717
BsaI	GGTCTC	1 cut(s)	947
BsaJI	CCNNGG	1 cut(s)	471
Bsc4I	CCNNNNNNNGG	2 cut(s)	93, 455
Bse118I	RCCGGY	2 cut(s)	115, 756
Bse1I	ACTGG	4 cut(s)	61, 81, 225, 272
Bse3DI	GCAATG	1 cut(s)	137
BseBI	CCWGG	1 cut(s)	450
BseCI	ATCGAT	2 cut(s)	177, 717
BseDI	CCNNGG	1 cut(s)	471
BseGI	GGATG	2 cut(s)	229, 467
BseLI	CCNNNNNNNGG	2 cut(s)	93, 455
BseMI	GCAATG	1 cut(s)	137
BseMII	CTCAG	2 cut(s)	112, 963
BseNI	ACTGG	4 cut(s)	61, 81, 225, 272
BseRI	GAGGAG	4 cut(s)	198, 899, 902, 905
BseSI	GKGCMC	1 cut(s)	190
BseXI	GCAGC	6 cut(s)	10, 38, 41, 44, 416, 529
BseYI	CCCAGC	1 cut(s)	567
BshFI	GGCC	1 cut(s)	136
BshNI	GGYRCC	2 cut(s)	40, 170
BshVI	ATCGAT	2 cut(s)	177, 717
BsiHKCI	CYCGRG	1 cut(s)	840
BsiSI	CCGG	3 cut(s)	116, 471, 757
BslFI	GGGAC	1 cut(s)	126
BslI	CCNNNNNNNGG	2 cut(s)	93, 455
BsmAI	GTCTC	3 cut(s)	245, 492, 947
BsmBI	CGTCTC	1 cut(s)	245
BsmFI	GGGAC	1 cut(s)	126
BsnI	GGCC	1 cut(s)	136
Bso31I	GGTCTC	1 cut(s)	947
BsoBI	CYCGRG	1 cut(s)	840
Bsp1286I	GDGCHC	2 cut(s)	99, 190
Bsp143I	GATC	2 cut(s)	379, 411
BspACI	CCGC	4 cut(s)	62, 236, 456, 683
BspANI	GGCC	1 cut(s)	136
BspCNI	CTCAG	2 cut(s)	111, 962
BspDI	ATCGAT	2 cut(s)	177, 717
BspLI	GGNNCC	6 cut(s)	42, 81, 114, 172, 234, 419
BspMAI	CTGCAG	1 cut(s)	28
BspPI	GGATC	1 cut(s)	387
BspT107I	GGYRCC	2 cut(s)	40, 170
BspTNI	GGTCTC	1 cut(s)	947
BsrDI	GCAATG	1 cut(s)	137
BsrFI	RCCGGY	2 cut(s)	115, 756
BsrI	ACTGG	4 cut(s)	61, 81, 225, 272
BssAI	RCCGGY	2 cut(s)	115, 756
BssECI	CCNNGG	1 cut(s)	471
BssMI	GATC	2 cut(s)	379, 411
Bst2UI	CCWGG	1 cut(s)	450
Bst4CI	ACNGT	2 cut(s)	555, 908
Bst6I	CTCTTC	2 cut(s)	656, 858
BstC8I	GCNNGC	4 cut(s)	121, 579, 732, 762
BstDEI	CTNAG	3 cut(s)	98, 624, 949
BstF5I	GGATG	2 cut(s)	229, 467
BstHHI	GCGC	2 cut(s)	74, 409
BstKTI	GATC	2 cut(s)	382, 414
BstMAI	GTCTC	3 cut(s)	245, 492, 947
BstMBI	GATC	2 cut(s)	379, 411
BstMWI	GCNNNNNNNGC	6 cut(s)	29, 32, 38, 47, 578, 587
BstNI	CCWGG	1 cut(s)	450
BstNSI	RCATGY	1 cut(s)	734
BstSCI	CCNGG	2 cut(s)	448, 470
BstSFI	CTRYAG	1 cut(s)	24
BstSLI	GKGCMC	1 cut(s)	190
BstV1I	GCAGC	6 cut(s)	10, 38, 41, 44, 416, 529
BstV2I	GAAGAC	2 cut(s)	645, 881
BstX2I	RGATCY	2 cut(s)	379, 411
BstYI	RGATCY	2 cut(s)	379, 411
Bsu15I	ATCGAT	2 cut(s)	177, 717
BsuRI	GGCC	1 cut(s)	136
BsuTUI	ATCGAT	2 cut(s)	177, 717
BtgZI	GCGATG	1 cut(s)	957
BtsCI	GGATG	2 cut(s)	229, 467
BtsIMutI	CAGTG	4 cut(s)	74, 106, 218, 265
Cac8I	GCNNGC	4 cut(s)	121, 579, 732, 762
CfoI	GCGC	2 cut(s)	74, 409
Cfr10I	RCCGGY	2 cut(s)	115, 756
Cfr13I	GGNCC	3 cut(s)	59, 80, 113
ClaI	ATCGAT	2 cut(s)	177, 717
CsiI	ACCWGGT	1 cut(s)	448
CviAII	CATG	4 cut(s)	422, 442, 731, 784
DdeI	CTNAG	3 cut(s)	98, 624, 949
DpnI	GATC	2 cut(s)	381, 413
DpnII	GATC	2 cut(s)	379, 411
EaeI	YGGCCR	1 cut(s)	134
Eam1104I	CTCTTC	2 cut(s)	656, 858
EarI	CTCTTC	2 cut(s)	656, 858
Eco24I	GRGCYC	1 cut(s)	99
Eco31I	GGTCTC	1 cut(s)	947
Eco47I	GGWCC	3 cut(s)	59, 80, 113
Eco57I	CTGAAG	1 cut(s)	221
Eco88I	CYCGRG	1 cut(s)	840
EcoRII	CCWGG	1 cut(s)	448
EcoT22I	ATGCAT	1 cut(s)	229
EcoT38I	GRGCYC	1 cut(s)	99
Esp3I	CGTCTC	1 cut(s)	245
FaeI	CATG	4 cut(s)	425, 445, 734, 787
FaqI	GGGAC	1 cut(s)	126
FatI	CATG	4 cut(s)	421, 441, 730, 783
FauI	CCCGC	2 cut(s)	449, 690
FauNDI	CATATG	1 cut(s)	240
Fnu4HI	GCNGC	7 cut(s)	24, 27, 30, 33, 236, 405, 543
FokI	GGATG	2 cut(s)	236, 454
FriOI	GRGCYC	1 cut(s)	99
Fsp4HI	GCNGC	7 cut(s)	24, 27, 30, 33, 236, 405, 543
FspAI	RTGCGCAY	1 cut(s)	73
FspBI	CTAG	3 cut(s)	329, 482, 819
FspI	TGCGCA	1 cut(s)	73
GlaI	GCGC	2 cut(s)	73, 408
GluI	GCNGC	7 cut(s)	24, 27, 30, 33, 236, 405, 543
GsaI	CCCAGC	1 cut(s)	571
HaeIII	GGCC	1 cut(s)	136
HapII	CCGG	3 cut(s)	116, 471, 757
HhaI	GCGC	2 cut(s)	74, 409
Hin1II	CATG	4 cut(s)	425, 445, 734, 787
Hin6I	GCGC	2 cut(s)	72, 407
HinP1I	GCGC	2 cut(s)	72, 407
HincII	GTYRAC	1 cut(s)	679
HindII	GTYRAC	1 cut(s)	679
HindIII	AAGCTT	1 cut(s)	647
HinfI	GANTC	3 cut(s)	437, 664, 947
HpaI	GTTAAC	1 cut(s)	679
HpaII	CCGG	3 cut(s)	116, 471, 757
HphI	GGTGA	3 cut(s)	344, 670, 920
Hpy166II	GTNNAC	2 cut(s)	679, 931
Hpy188I	TCNGA	5 cut(s)	17, 634, 753, 904, 952
Hpy188III	TCNNGA	3 cut(s)	415, 482, 917
Hpy8I	GTNNAC	2 cut(s)	679, 931
HpyAV	CCTTC	1 cut(s)	153
HpyCH4III	ACNGT	2 cut(s)	555, 908
HpyCH4IV	ACGT	2 cut(s)	68, 254
HpyCH4V	TGCA	7 cut(s)	26, 130, 156, 227, 545, 581, 614
HpyF10VI	GCNNNNNNNGC	6 cut(s)	29, 32, 38, 47, 578, 587
HpyF3I	CTNAG	3 cut(s)	98, 624, 949
HpySE526I	ACGT	2 cut(s)	68, 254
Hsp92II	CATG	4 cut(s)	425, 445, 734, 787
HspAI	GCGC	2 cut(s)	72, 407
KspAI	GTTAAC	1 cut(s)	679
Kzo9I	GATC	2 cut(s)	379, 411
LmnI	GCTCC	3 cut(s)	232, 390, 727
Lsp1109I	GCAGC	6 cut(s)	10, 38, 41, 44, 416, 529
LweI	GCATC	1 cut(s)	214
MabI	ACCWGGT	1 cut(s)	448
MaeI	CTAG	3 cut(s)	329, 482, 819
MaeII	ACGT	2 cut(s)	68, 254
MaeIII	GTNAC	1 cut(s)	4
MalI	GATC	2 cut(s)	381, 413
MboI	GATC	2 cut(s)	379, 411
MboII	GAAGA	8 cut(s)	359, 421, 650, 673, 772, 872, 875, 886
MflI	RGATCY	2 cut(s)	379, 411
MhlI	GDGCHC	2 cut(s)	99, 190
MlsI	TGGCCA	1 cut(s)	136
MluCI	AATT	3 cut(s)	191, 335, 489
MluNI	TGGCCA	1 cut(s)	136
MlyI	GAGTC	2 cut(s)	673, 941
MmeI	TCCRAC	1 cut(s)	586
MnlI	CCTC	8 cut(s)	216, 219, 752, 850, 859, 877, 880, 883
Mox20I	TGGCCA	1 cut(s)	136
Mph1103I	ATGCAT	1 cut(s)	229
MscI	TGGCCA	1 cut(s)	136
MseI	TTAA	3 cut(s)	492, 533, 678
Msp20I	TGGCCA	1 cut(s)	136
MspA1I	CMGCKG	1 cut(s)	542
MspI	CCGG	3 cut(s)	116, 471, 757
MspR9I	CCNGG	2 cut(s)	450, 472
MvaI	CCWGG	1 cut(s)	450
MwoI	GCNNNNNNNGC	6 cut(s)	29, 32, 38, 47, 578, 587
NciI	CCSGG	1 cut(s)	472
NdeI	CATATG	1 cut(s)	240
NdeII	GATC	2 cut(s)	379, 411
NlaIII	CATG	4 cut(s)	425, 445, 734, 787
NlaIV	GGNNCC	6 cut(s)	42, 81, 114, 172, 234, 419
NsbI	TGCGCA	1 cut(s)	73
NsiI	ATGCAT	1 cut(s)	229
NspI	RCATGY	1 cut(s)	734
PaeI	GCATGC	1 cut(s)	734
PaeR7I	CTCGAG	1 cut(s)	840
PcsI	WCGNNNNNNNCGW	1 cut(s)	174
PfeI	GAWTC	1 cut(s)	437
PkrI	GCNGC	7 cut(s)	25, 28, 31, 34, 237, 406, 544
PleI	GAGTC	2 cut(s)	672, 941
PpsI	GAGTC	2 cut(s)	672, 941
PshBI	ATTAAT	1 cut(s)	492
Psp6I	CCWGG	1 cut(s)	448
PspFI	CCCAGC	1 cut(s)	567
PspGI	CCWGG	1 cut(s)	448
PspN4I	GGNNCC	6 cut(s)	42, 81, 114, 172, 234, 419
PspPI	GGNCC	3 cut(s)	59, 80, 113
PspXI	VCTCGAGB	1 cut(s)	840
PstI	CTGCAG	1 cut(s)	28
PsuI	RGATCY	2 cut(s)	379, 411
PvuII	CAGCTG	1 cut(s)	542
SaqAI	TTAA	3 cut(s)	492, 533, 678
SatI	GCNGC	7 cut(s)	24, 27, 30, 33, 236, 405, 543
Sau3AI	GATC	2 cut(s)	379, 411
Sau96I	GGNCC	3 cut(s)	59, 80, 113
SchI	GAGTC	2 cut(s)	673, 941
ScrFI	CCNGG	2 cut(s)	450, 472
SduI	GDGCHC	2 cut(s)	99, 190
SexAI	ACCWGGT	1 cut(s)	448
SfaNI	GCATC	1 cut(s)	214
SfcI	CTRYAG	1 cut(s)	24
Sfr274I	CTCGAG	1 cut(s)	840
SinI	GGWCC	3 cut(s)	59, 80, 113
SlaI	CTCGAG	1 cut(s)	840
SmlI	CTYRAG	1 cut(s)	840
SmoI	CTYRAG	1 cut(s)	840
SphI	GCATGC	1 cut(s)	734
Sse9I	AATT	3 cut(s)	191, 335, 489
SsiI	CCGC	4 cut(s)	62, 236, 456, 683
SspMI	CTAG	3 cut(s)	329, 482, 819
StyD4I	CCNGG	2 cut(s)	448, 470
TaaI	ACNGT	2 cut(s)	555, 908
TaiI	ACGT	2 cut(s)	71, 257
TaqI	TCGA	4 cut(s)	177, 717, 744, 841
TasI	AATT	3 cut(s)	191, 335, 489
TauI	GCSGC	1 cut(s)	238
TfiI	GAWTC	1 cut(s)	437
Tru1I	TTAA	3 cut(s)	492, 533, 678
Tru9I	TTAA	3 cut(s)	492, 533, 678
TscAI	CASTG	4 cut(s)	81, 106, 225, 272
TseI	GCWGC	6 cut(s)	23, 26, 29, 32, 404, 542
TspDTI	ATGAA	3 cut(s)	458, 651, 772
TspGWI	ACGGA	1 cut(s)	72
TspRI	CASTG	4 cut(s)	81, 106, 225, 272
VpaK11BI	GGWCC	3 cut(s)	59, 80, 113
VspI	ATTAAT	1 cut(s)	492
XbaI	TCTAGA	1 cut(s)	481
XceI	RCATGY	1 cut(s)	734
XcmI	CCANNNNNNNNNTGG	1 cut(s)	53
XhoI	CTCGAG	1 cut(s)	840
XspI	CTAG	3 cut(s)	329, 482, 819
Zsp2I	ATGCAT	1 cut(s)	229

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.