Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010680

Physical Location & Seq

Genomic Coordinates Reverse (-)

13015250 .. 13016235

Gene Structure 986 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G25470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGAACTCATTTTCTGCCTTTTCTGAAATGTTTGGCTCCGATTACGAGTCTCCGGTTTCCTCAGGCGGTGATTACAGTCCGAAGCTTGCCACGAGCTGCCCCAAGAAACCAGCGGGAAGGAAGAAGTTTCGTGAGACTCGTCACCCAATTTACAGAGGAGTTCGTCAAAGAAACTCCGGTAAGTGGGTGTGTGAGTTGAGAGAGCCAAACAAGAAAACGAGGATTTGGCTCGGGACTTTCCAAACCGCTGAGATGGCAGCTCGTGCTCACGACGTCGCCGCCATAGCTCTCCGTGGCAGATCTGCCTGTCTCAATTTCGCTGACTCGGCTTGGCGGCTACGAATCCCGGAATCAACCTGTGCCAAGGAAATCCAAAAGGCGGCGGCTGAAGCCGCGTTGAATTTTCAAGATGAGATGTGTCATATGACGACGGATGCTCATGGTCTTGACATGGAGGAGACCTTGGTGGAGGCTATTTATACGCCGGAACAGAGCCAAGATGCGTTTTATATGGATGAAGAGGCGATGTTGGGGATGTCTAGTTTGTTGGATAACATGGCCGAAGGGATGCTTTTACCGTCGCCGTCGGTTCAATGGAACTATAATTTTGATGTCGAGGGAGATGATGACGTGTCCTTATGGAGCTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009631 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010035 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042221 GO:0043436 GO:0043565 GO:0044237 GO:0044281 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

216

Amino Acids

24.26

Weight (kDa)

5.0

Isoelectric Point (pI)

55.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	50 - 99	7.3e-15	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0010680)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25470 AT4G25480 AT4G25490 AT5G51990
fragaria_vesca	FvH4_7g28950
malus_domestica	MD01G1196100.v1.1 MD07G1262900.v1.1
prunus_persica	Prupe.2G289500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0376641
rosa_laevigata	RLG00000026586
rosa_multiflora	Rmu_sc0005594.1_g000005 Rmu_sc0009616.1_g000001
rosa_roxburghii	Rroxscaffold_4G00281920 Rroxscaffold_4G00308350
rosa_rugosa	Rorug01G0397000
rosa_samantha	Rh1AG413900 Rh1BG373300 Rh1CG387200 Rh1DG404300
rosa_wichuraiana	Rw1G036310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	276
AccII	CGCG	1 cut(s)	395
AciI	CCGC	8 cut(s)	66, 113, 246, 279, 334, 380, 383, 393
AcoI	YGGCCR	1 cut(s)	558
AcsI	RAATTY	1 cut(s)	400
AcuI	CTGAAG	1 cut(s)	408
AcyI	GRCGYC	1 cut(s)	273
AfiI	CCNNNNNNNGG	2 cut(s)	183, 379
AflIII	ACRYGT	1 cut(s)	630
AgsI	TTSAA	3 cut(s)	400, 407, 593
AjiI	CACGTC	1 cut(s)	631
AluBI	AGCT	5 cut(s)	85, 96, 260, 287, 645
AluI	AGCT	5 cut(s)	85, 96, 260, 287, 645
Alw21I	GWGCWC	1 cut(s)	268
Alw26I	GTCTC	4 cut(s)	54, 128, 314, 452
Ama87I	CYCGRG	1 cut(s)	230
AoxI	GGCC	1 cut(s)	558
ApeKI	GCWGC	2 cut(s)	96, 257
ApoI	RAATTY	1 cut(s)	400
AsuC2I	CCSGG	1 cut(s)	347
AsuHPI	GGTGA	2 cut(s)	80, 134
AvaI	CYCGRG	1 cut(s)	230
AxyI	CCTNAGG	1 cut(s)	61
BauI	CACGAG	2 cut(s)	91, 261
Bbv12I	GWGCWC	1 cut(s)	268
BbvI	GCAGC	2 cut(s)	83, 269
BccI	CCATC	1 cut(s)	247
BceAI	ACGGC	1 cut(s)	568
BcnI	CCSGG	1 cut(s)	347
BcoDI	GTCTC	4 cut(s)	54, 128, 314, 452
BfaI	CTAG	1 cut(s)	540
BglII	AGATCT	1 cut(s)	299
BisI	GCNGC	7 cut(s)	97, 258, 279, 335, 381, 384, 393
BlsI	GCNGC	7 cut(s)	98, 259, 280, 336, 382, 385, 394
Bme1390I	CCNGG	1 cut(s)	347
BmeT110I	CYCGRG	1 cut(s)	230
BmgBI	CACGTC	1 cut(s)	631
BmiI	GGNNCC	1 cut(s)	37
BmrFI	CCNGG	1 cut(s)	347
BmsI	GCATC	3 cut(s)	424, 490, 558
BpuMI	CCSGG	1 cut(s)	347
BsaHI	GRCGYC	1 cut(s)	273
BsaI	GGTCTC	1 cut(s)	452
BsaJI	CCNNGG	3 cut(s)	292, 363, 462
BsaWI	WCCGGW	2 cut(s)	52, 176
Bsc4I	CCNNNNNNNGG	2 cut(s)	183, 379
Bse21I	CCTNAGG	1 cut(s)	61
BseDI	CCNNGG	3 cut(s)	292, 363, 462
BseGI	GGATG	4 cut(s)	439, 520, 540, 573
BseLI	CCNNNNNNNGG	2 cut(s)	183, 379
BseMII	CTCAG	2 cut(s)	75, 240
BseRI	GAGGAG	2 cut(s)	171, 470
BseXI	GCAGC	2 cut(s)	83, 269
Bsh1236I	CGCG	1 cut(s)	395
BshFI	GGCC	1 cut(s)	560
BsiHKAI	GWGCWC	1 cut(s)	268
BsiHKCI	CYCGRG	1 cut(s)	230
BsiSI	CCGG	4 cut(s)	53, 177, 347, 485
BslFI	GGGAC	1 cut(s)	247
BslI	CCNNNNNNNGG	2 cut(s)	183, 379
BsmAI	GTCTC	4 cut(s)	54, 128, 314, 452
BsmFI	GGGAC	1 cut(s)	247
BsnI	GGCC	1 cut(s)	560
Bso31I	GGTCTC	1 cut(s)	452
BsoBI	CYCGRG	1 cut(s)	230
Bsp1286I	GDGCHC	1 cut(s)	268
Bsp143I	GATC	1 cut(s)	299
BspACI	CCGC	8 cut(s)	66, 113, 246, 279, 334, 380, 383, 393
BspANI	GGCC	1 cut(s)	560
BspCNI	CTCAG	2 cut(s)	74, 241
BspFNI	CGCG	1 cut(s)	395
BspLI	GGNNCC	1 cut(s)	37
BspTNI	GGTCTC	1 cut(s)	452
BssECI	CCNNGG	3 cut(s)	292, 363, 462
BssMI	GATC	1 cut(s)	299
BssNI	GRCGYC	1 cut(s)	273
BssSI	CACGAG	2 cut(s)	91, 261
BssT1I	CCWWGG	2 cut(s)	363, 462
Bst2BI	CACGAG	2 cut(s)	91, 261
Bst4CI	ACNGT	2 cut(s)	77, 579
Bst6I	CTCTTC	1 cut(s)	513
BstACI	GRCGYC	1 cut(s)	273
BstAPI	GCANNNNNTGC	1 cut(s)	263
BstC8I	GCNNGC	1 cut(s)	87
BstDEI	CTNAG	2 cut(s)	61, 249
BstDSI	CCRYGG	1 cut(s)	292
BstF5I	GGATG	4 cut(s)	439, 520, 540, 573
BstFNI	CGCG	1 cut(s)	395
BstKTI	GATC	1 cut(s)	302
BstMAI	GTCTC	4 cut(s)	54, 128, 314, 452
BstMBI	GATC	1 cut(s)	299
BstMWI	GCNNNNNNNGC	6 cut(s)	254, 263, 284, 326, 389, 392
BstSCI	CCNGG	1 cut(s)	345
BstUI	CGCG	1 cut(s)	395
BstV1I	GCAGC	2 cut(s)	83, 269
BstX2I	RGATCY	1 cut(s)	299
BstYI	RGATCY	1 cut(s)	299
Bsu36I	CCTNAGG	1 cut(s)	61
BsuRI	GGCC	1 cut(s)	560
BtgI	CCRYGG	1 cut(s)	292
BtgZI	GCGATG	1 cut(s)	539
BtrI	CACGTC	1 cut(s)	631
BtsCI	GGATG	4 cut(s)	439, 520, 540, 573
Cac8I	GCNNGC	1 cut(s)	87
CviAII	CATG	3 cut(s)	440, 451, 556
DdeI	CTNAG	2 cut(s)	61, 249
DpnI	GATC	1 cut(s)	301
DpnII	GATC	1 cut(s)	299
EaeI	YGGCCR	1 cut(s)	558
Eam1104I	CTCTTC	1 cut(s)	513
EarI	CTCTTC	1 cut(s)	513
Eco130I	CCWWGG	2 cut(s)	363, 462
Eco31I	GGTCTC	1 cut(s)	452
Eco57I	CTGAAG	1 cut(s)	408
Eco81I	CCTNAGG	1 cut(s)	61
Eco88I	CYCGRG	1 cut(s)	230
EcoT14I	CCWWGG	2 cut(s)	363, 462
ErhI	CCWWGG	2 cut(s)	363, 462
FaeI	CATG	3 cut(s)	443, 454, 559
FalI	AAGNNNNNCTT	2 cut(s)	555, 587
FaqI	GGGAC	1 cut(s)	247
FatI	CATG	3 cut(s)	439, 450, 555
FauI	CCCGC	1 cut(s)	106
FauNDI	CATATG	1 cut(s)	423
Fnu4HI	GCNGC	7 cut(s)	97, 258, 279, 335, 381, 384, 393
FokI	GGATG	4 cut(s)	446, 527, 547, 580
Fsp4HI	GCNGC	7 cut(s)	97, 258, 279, 335, 381, 384, 393
FspBI	CTAG	1 cut(s)	540
GluI	GCNGC	7 cut(s)	97, 258, 279, 335, 381, 384, 393
HaeIII	GGCC	1 cut(s)	560
HapII	CCGG	4 cut(s)	53, 177, 347, 485
Hin1I	GRCGYC	1 cut(s)	273
Hin1II	CATG	3 cut(s)	443, 454, 559
HindIII	AAGCTT	1 cut(s)	83
HinfI	GANTC	5 cut(s)	47, 136, 323, 342, 350
HpaII	CCGG	4 cut(s)	53, 177, 347, 485
HphI	GGTGA	2 cut(s)	80, 134
Hpy188I	TCNGA	3 cut(s)	25, 40, 81
Hpy188III	TCNNGA	5 cut(s)	131, 232, 269, 407, 446
Hpy99I	CGWCG	5 cut(s)	275, 278, 433, 583, 589
HpyAV	CCTTC	2 cut(s)	111, 557
HpyCH4III	ACNGT	2 cut(s)	77, 579
HpyCH4IV	ACGT	2 cut(s)	273, 630
HpyF10VI	GCNNNNNNNGC	6 cut(s)	254, 263, 284, 326, 389, 392
HpyF3I	CTNAG	2 cut(s)	61, 249
HpySE526I	ACGT	2 cut(s)	273, 630
Hsp92I	GRCGYC	1 cut(s)	273
Hsp92II	CATG	3 cut(s)	443, 454, 559
Kzo9I	GATC	1 cut(s)	299
LmnI	GCTCC	2 cut(s)	41, 642
LpnPI	CCDG	8 cut(s)	48, 66, 123, 190, 319, 360, 370, 498
Lsp1109I	GCAGC	2 cut(s)	83, 269
LweI	GCATC	3 cut(s)	424, 490, 558
MaeI	CTAG	1 cut(s)	540
MaeII	ACGT	2 cut(s)	273, 630
MaeIII	GTNAC	1 cut(s)	140
MalI	GATC	1 cut(s)	301
MboI	GATC	1 cut(s)	299
MboII	GAAGA	2 cut(s)	133, 530
MflI	RGATCY	1 cut(s)	299
MhlI	GDGCHC	1 cut(s)	268
MluCI	AATT	4 cut(s)	147, 313, 400, 604
MlyI	GAGTC	3 cut(s)	56, 130, 317
MmeI	TCCRAC	1 cut(s)	528
MnlI	CCTC	7 cut(s)	70, 149, 213, 448, 463, 514, 610
MseI	TTAA	1 cut(s)	649
MspA1I	CMGCKG	2 cut(s)	113, 248
MspI	CCGG	4 cut(s)	53, 177, 347, 485
MspR9I	CCNGG	1 cut(s)	347
MvnI	CGCG	1 cut(s)	395
MwoI	GCNNNNNNNGC	6 cut(s)	254, 263, 284, 326, 389, 392
NciI	CCSGG	1 cut(s)	347
NdeI	CATATG	1 cut(s)	423
NdeII	GATC	1 cut(s)	299
NlaIII	CATG	3 cut(s)	443, 454, 559
NlaIV	GGNNCC	1 cut(s)	37
NmeAIII	GCCGAG	1 cut(s)	305
NmuCI	GTSAC	1 cut(s)	140
PcsI	WCGNNNNNNNCGW	1 cut(s)	136
PfeI	GAWTC	2 cut(s)	342, 350
PfoI	TCCNGGA	1 cut(s)	345
PkrI	GCNGC	7 cut(s)	98, 259, 280, 336, 382, 385, 394
PleI	GAGTC	3 cut(s)	55, 130, 317
PpsI	GAGTC	3 cut(s)	55, 130, 317
PspN4I	GGNNCC	1 cut(s)	37
PsuI	RGATCY	1 cut(s)	299
SaqAI	TTAA	1 cut(s)	649
SatI	GCNGC	7 cut(s)	97, 258, 279, 335, 381, 384, 393
Sau3AI	GATC	1 cut(s)	299
SchI	GAGTC	3 cut(s)	56, 130, 317
ScrFI	CCNGG	1 cut(s)	347
SduI	GDGCHC	1 cut(s)	268
SetI	ASST	9 cut(s)	87, 98, 262, 276, 289, 359, 464, 633, 647
SfaNI	GCATC	3 cut(s)	424, 490, 558
Sse9I	AATT	4 cut(s)	147, 313, 400, 604
SsiI	CCGC	8 cut(s)	66, 113, 246, 279, 334, 380, 383, 393
SspMI	CTAG	1 cut(s)	540
StyD4I	CCNGG	1 cut(s)	345
StyI	CCWWGG	2 cut(s)	363, 462
TaaI	ACNGT	2 cut(s)	77, 579
TaiI	ACGT	2 cut(s)	276, 633
TaqI	TCGA	1 cut(s)	615
TasI	AATT	4 cut(s)	147, 313, 400, 604
TauI	GCSGC	5 cut(s)	281, 337, 383, 386, 395
TfiI	GAWTC	2 cut(s)	342, 350
Tru1I	TTAA	1 cut(s)	649
Tru9I	TTAA	1 cut(s)	649
TseFI	GTSAC	1 cut(s)	140
TseI	GCWGC	2 cut(s)	96, 257
Tsp45I	GTSAC	1 cut(s)	140
TspDTI	ATGAA	2 cut(s)	17, 531
TspGWI	ACGGA	2 cut(s)	281, 446
XapI	RAATTY	1 cut(s)	400
XspI	CTAG	1 cut(s)	540
ZraI	GACGTC	1 cut(s)	274

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.