Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010680

Physical Location & Seq

Genomic Coordinates Reverse (-)

13021780 .. 13022996

Gene Structure 1217 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G25490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGAACTCATTTTCAGCTTTTTCTGAAATGTTTGGCTCCGATTACGAGCCTCAAGGCGGAGATTATTGTCCGACGTTGGCCACGAGTTGTCCGAAGAAACCGGCGGGCCGTAAGAAGTTTCGTGAGACTCGTCACCCAATTTACAGAGGAGTTCGTCAAAGAAACTCCGGTAAGTGGGTTTCTGAAGTGAGAGAGCCAAACAAGAAAACCAGGATTTGGCTCGGGACTTTCCAAACCGCTGAGATGGCAGCTCGTGCTCACGACGTCGCTGCATTAGCCCTCCGTGGCCGATCAGCATGTCTCAACTTCGCTGACTCGGCTTGGCGGCTACGAATCCCGGAGTCAACATGCGCCAAGGATATCCAAAAAGCGGCTGCTGAAGCGGCGTTGGCTTTTCAAGATGAGACGTGTGATACGACGACCACGAATCATGGCCTGGACATGGAGGAGACGATGGTGGAAGCTATTTATACACCGGAACAGAGCGAAGGTGCGTTTTATATGGATGAGGAGACAATGTTTGGGATGCCGACTTTGTTGGATAATATGGCTGAAGGCATGCTTTTACCGCCGCCGTCTGTTCAATGGAATCATAATTATGACGGCGAAGGAGATGGTGACGTGTCGCTTTGGAGTTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009631 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010035 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042221 GO:0043436 GO:0043565 GO:0044237 GO:0044281 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

213

Amino Acids

23.83

Weight (kDa)

4.99

Isoelectric Point (pI)

49.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	47 - 96	1.1e-14	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010680)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25470 AT4G25480 AT4G25490 AT5G51990
fragaria_vesca	FvH4_7g28950
malus_domestica	MD01G1196100.v1.1 MD07G1262900.v1.1
prunus_persica	Prupe.2G289500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0376641
rosa_laevigata	RLG00000026586
rosa_multiflora	Rmu_sc0005594.1_g000005 Rmu_sc0009616.1_g000001
rosa_roxburghii	Rroxscaffold_4G00281920 Rroxscaffold_4G00308350
rosa_rugosa	Rorug01G0397000
rosa_samantha	Rh1AG413900 Rh1BG373300 Rh1CG387200 Rh1DG404300
rosa_wichuraiana	Rw1G036310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	267
AccB7I	CCANNNNNTGG	1 cut(s)	216
AciI	CCGC	8 cut(s)	57, 104, 237, 325, 371, 383, 569, 572
AcoI	YGGCCR	2 cut(s)	78, 286
AcuI	CTGAAG	3 cut(s)	204, 399, 573
AcyI	GRCGYC	1 cut(s)	264
AfiI	CCNNNNNNNGG	5 cut(s)	56, 174, 216, 370, 442
AflIII	ACRYGT	2 cut(s)	407, 621
AgsI	TTSAA	2 cut(s)	398, 584
AjiI	CACGTC	2 cut(s)	408, 622
AjnI	CCWGG	2 cut(s)	209, 435
AluBI	AGCT	3 cut(s)	17, 251, 464
AluI	AGCT	3 cut(s)	17, 251, 464
Alw21I	GWGCWC	1 cut(s)	259
Alw26I	GTCTC	5 cut(s)	119, 305, 398, 443, 506
Ama87I	CYCGRG	1 cut(s)	221
AoxI	GGCC	4 cut(s)	78, 106, 286, 433
ApeKI	GCWGC	3 cut(s)	248, 269, 374
AspLEI	GCGC	1 cut(s)	353
AspS9I	GGNCC	1 cut(s)	106
AsuC2I	CCSGG	1 cut(s)	338
AsuHPI	GGTGA	2 cut(s)	125, 629
AvaI	CYCGRG	1 cut(s)	221
BalI	TGGCCA	1 cut(s)	80
BauI	CACGAG	2 cut(s)	82, 252
Bbv12I	GWGCWC	1 cut(s)	259
BbvI	GCAGC	3 cut(s)	256, 260, 361
BccI	CCATC	3 cut(s)	238, 448, 608
BceAI	ACGGC	3 cut(s)	93, 559, 619
BcgI	CGANNNNNNTGC	2 cut(s)	251, 285
BciT130I	CCWGG	2 cut(s)	211, 437
BcnI	CCSGG	1 cut(s)	338
BcoDI	GTCTC	5 cut(s)	119, 305, 398, 443, 506
BisI	GCNGC	7 cut(s)	249, 270, 326, 372, 375, 384, 572
BlsI	GCNGC	7 cut(s)	250, 271, 327, 373, 376, 385, 573
Bme1390I	CCNGG	3 cut(s)	211, 338, 437
BmeT110I	CYCGRG	1 cut(s)	221
BmgBI	CACGTC	2 cut(s)	408, 622
BmgT120I	GGNCC	1 cut(s)	106
BmiI	GGNNCC	1 cut(s)	37
BmrFI	CCNGG	3 cut(s)	211, 338, 437
BmsI	GCATC	1 cut(s)	516
BpuEI	CTTGAG	1 cut(s)	36
BpuMI	CCSGG	1 cut(s)	338
BsaHI	GRCGYC	1 cut(s)	264
BsaJI	CCNNGG	2 cut(s)	283, 354
BsaWI	WCCGGW	2 cut(s)	167, 475
BsaXI	ACNNNNNCTCC	2 cut(s)	503, 533
Bsc4I	CCNNNNNNNGG	5 cut(s)	56, 174, 216, 370, 442
Bse118I	RCCGGY	1 cut(s)	100
BseBI	CCWGG	2 cut(s)	211, 437
BseDI	CCNNGG	2 cut(s)	283, 354
BseGI	GGATG	2 cut(s)	511, 531
BseLI	CCNNNNNNNGG	5 cut(s)	56, 174, 216, 370, 442
BseMII	CTCAG	1 cut(s)	231
BseRI	GAGGAG	3 cut(s)	162, 461, 524
BseXI	GCAGC	3 cut(s)	256, 260, 361
BshFI	GGCC	4 cut(s)	80, 108, 288, 435
BsiHKAI	GWGCWC	1 cut(s)	259
BsiHKCI	CYCGRG	1 cut(s)	221
BsiSI	CCGG	4 cut(s)	101, 168, 338, 476
BslFI	GGGAC	1 cut(s)	238
BslI	CCNNNNNNNGG	5 cut(s)	56, 174, 216, 370, 442
BsmAI	GTCTC	5 cut(s)	119, 305, 398, 443, 506
BsmBI	CGTCTC	2 cut(s)	398, 443
BsmFI	GGGAC	1 cut(s)	238
BsnI	GGCC	4 cut(s)	80, 108, 288, 435
BsoBI	CYCGRG	1 cut(s)	221
Bsp1286I	GDGCHC	1 cut(s)	259
Bsp143I	GATC	1 cut(s)	290
BspACI	CCGC	8 cut(s)	57, 104, 237, 325, 371, 383, 569, 572
BspANI	GGCC	4 cut(s)	80, 108, 288, 435
BspCNI	CTCAG	1 cut(s)	232
BspLI	GGNNCC	1 cut(s)	37
BsrFI	RCCGGY	1 cut(s)	100
BssAI	RCCGGY	1 cut(s)	100
BssECI	CCNNGG	2 cut(s)	283, 354
BssMI	GATC	1 cut(s)	290
BssNI	GRCGYC	1 cut(s)	264
BssSI	CACGAG	2 cut(s)	82, 252
BssT1I	CCWWGG	1 cut(s)	354
Bst2BI	CACGAG	2 cut(s)	82, 252
Bst2UI	CCWGG	2 cut(s)	211, 437
BstACI	GRCGYC	1 cut(s)	264
BstAPI	GCANNNNNTGC	1 cut(s)	254
BstC8I	GCNNGC	2 cut(s)	106, 560
BstDEI	CTNAG	1 cut(s)	240
BstDSI	CCRYGG	1 cut(s)	283
BstF5I	GGATG	2 cut(s)	511, 531
BstHHI	GCGC	1 cut(s)	353
BstKTI	GATC	1 cut(s)	293
BstMAI	GTCTC	5 cut(s)	119, 305, 398, 443, 506
BstMBI	GATC	1 cut(s)	290
BstMWI	GCNNNNNNNGC	8 cut(s)	245, 254, 275, 317, 380, 383, 389, 568
BstNI	CCWGG	2 cut(s)	211, 437
BstNSI	RCATGY	3 cut(s)	300, 351, 562
BstSCI	CCNGG	3 cut(s)	209, 336, 435
BstV1I	GCAGC	3 cut(s)	256, 260, 361
BsuRI	GGCC	4 cut(s)	80, 108, 288, 435
BtgI	CCRYGG	1 cut(s)	283
BtrI	CACGTC	2 cut(s)	408, 622
BtsCI	GGATG	2 cut(s)	511, 531
Cac8I	GCNNGC	2 cut(s)	106, 560
CfoI	GCGC	1 cut(s)	353
Cfr10I	RCCGGY	1 cut(s)	100
Cfr13I	GGNCC	1 cut(s)	106
CviAII	CATG	5 cut(s)	297, 348, 431, 442, 559
DdeI	CTNAG	1 cut(s)	240
DpnI	GATC	1 cut(s)	292
DpnII	GATC	1 cut(s)	290
EaeI	YGGCCR	2 cut(s)	78, 286
EciI	GGCGGA	1 cut(s)	72
Eco130I	CCWWGG	1 cut(s)	354
Eco32I	GATATC	1 cut(s)	361
Eco57I	CTGAAG	3 cut(s)	204, 399, 573
Eco88I	CYCGRG	1 cut(s)	221
EcoRII	CCWGG	2 cut(s)	209, 435
EcoRV	GATATC	1 cut(s)	361
EcoT14I	CCWWGG	1 cut(s)	354
ErhI	CCWWGG	1 cut(s)	354
Esp3I	CGTCTC	2 cut(s)	398, 443
FaeI	CATG	5 cut(s)	300, 351, 434, 445, 562
FalI	AAGNNNNNCTT	2 cut(s)	546, 578
FaqI	GGGAC	1 cut(s)	238
FatI	CATG	5 cut(s)	296, 347, 430, 441, 558
FauI	CCCGC	1 cut(s)	97
Fnu4HI	GCNGC	7 cut(s)	249, 270, 326, 372, 375, 384, 572
FokI	GGATG	2 cut(s)	518, 538
Fsp4HI	GCNGC	7 cut(s)	249, 270, 326, 372, 375, 384, 572
GlaI	GCGC	1 cut(s)	352
GluI	GCNGC	7 cut(s)	249, 270, 326, 372, 375, 384, 572
HaeIII	GGCC	4 cut(s)	80, 108, 288, 435
HapII	CCGG	4 cut(s)	101, 168, 338, 476
HhaI	GCGC	1 cut(s)	353
Hin1I	GRCGYC	1 cut(s)	264
Hin1II	CATG	5 cut(s)	300, 351, 434, 445, 562
Hin6I	GCGC	1 cut(s)	351
HinP1I	GCGC	1 cut(s)	351
HincII	GTYRAC	1 cut(s)	345
HindII	GTYRAC	1 cut(s)	345
HinfI	GANTC	6 cut(s)	127, 314, 333, 341, 427, 589
HpaII	CCGG	4 cut(s)	101, 168, 338, 476
HphI	GGTGA	2 cut(s)	125, 629
Hpy166II	GTNNAC	1 cut(s)	345
Hpy188I	TCNGA	5 cut(s)	25, 40, 72, 93, 184
Hpy188III	TCNNGA	4 cut(s)	122, 223, 260, 398
Hpy8I	GTNNAC	1 cut(s)	345
Hpy99I	CGWCG	4 cut(s)	76, 266, 269, 421
HpyAV	CCTTC	3 cut(s)	482, 548, 602
HpyCH4IV	ACGT	4 cut(s)	74, 264, 407, 621
HpyCH4V	TGCA	1 cut(s)	272
HpyF10VI	GCNNNNNNNGC	8 cut(s)	245, 254, 275, 317, 380, 383, 389, 568
HpyF3I	CTNAG	1 cut(s)	240
HpySE526I	ACGT	4 cut(s)	74, 264, 407, 621
Hsp92I	GRCGYC	1 cut(s)	264
Hsp92II	CATG	5 cut(s)	300, 351, 434, 445, 562
HspAI	GCGC	1 cut(s)	351
Kzo9I	GATC	1 cut(s)	290
LmnI	GCTCC	1 cut(s)	41
LpnPI	CCDG	8 cut(s)	114, 181, 196, 223, 351, 422, 449, 489
Lsp1109I	GCAGC	3 cut(s)	256, 260, 361
LweI	GCATC	1 cut(s)	516
MaeII	ACGT	4 cut(s)	74, 264, 407, 621
MaeIII	GTNAC	3 cut(s)	131, 617, 635
MalI	GATC	1 cut(s)	292
MboI	GATC	1 cut(s)	290
MboII	GAAGA	1 cut(s)	106
MhlI	GDGCHC	1 cut(s)	259
MlsI	TGGCCA	1 cut(s)	80
MluCI	AATT	2 cut(s)	138, 595
MluNI	TGGCCA	1 cut(s)	80
MlyI	GAGTC	3 cut(s)	121, 308, 350
MmeI	TCCRAC	2 cut(s)	95, 519
MnlI	CCTC	5 cut(s)	60, 140, 290, 439, 502
Mox20I	TGGCCA	1 cut(s)	80
MscI	TGGCCA	1 cut(s)	80
MslI	CAYNNNNRTG	1 cut(s)	597
Msp20I	TGGCCA	1 cut(s)	80
MspA1I	CMGCKG	1 cut(s)	239
MspI	CCGG	4 cut(s)	101, 168, 338, 476
MspR9I	CCNGG	3 cut(s)	211, 338, 437
MvaI	CCWGG	2 cut(s)	211, 437
MwoI	GCNNNNNNNGC	8 cut(s)	245, 254, 275, 317, 380, 383, 389, 568
NciI	CCSGG	1 cut(s)	338
NdeII	GATC	1 cut(s)	290
NlaIII	CATG	5 cut(s)	300, 351, 434, 445, 562
NlaIV	GGNNCC	1 cut(s)	37
NmeAIII	GCCGAG	1 cut(s)	296
NmuCI	GTSAC	2 cut(s)	131, 617
NspI	RCATGY	3 cut(s)	300, 351, 562
PaeI	GCATGC	1 cut(s)	562
PcsI	WCGNNNNNNNCGW	5 cut(s)	80, 89, 127, 413, 422
PfeI	GAWTC	3 cut(s)	333, 427, 589
PflMI	CCANNNNNTGG	1 cut(s)	216
PfoI	TCCNGGA	1 cut(s)	336
PkrI	GCNGC	7 cut(s)	250, 271, 327, 373, 376, 385, 573
PleI	GAGTC	3 cut(s)	121, 308, 349
PpsI	GAGTC	3 cut(s)	121, 308, 349
Psp6I	CCWGG	2 cut(s)	209, 435
PspGI	CCWGG	2 cut(s)	209, 435
PspN4I	GGNNCC	1 cut(s)	37
PspPI	GGNCC	1 cut(s)	106
RseI	CAYNNNNRTG	1 cut(s)	597
SatI	GCNGC	7 cut(s)	249, 270, 326, 372, 375, 384, 572
Sau3AI	GATC	1 cut(s)	290
Sau96I	GGNCC	1 cut(s)	106
SchI	GAGTC	3 cut(s)	121, 308, 350
ScrFI	CCNGG	3 cut(s)	211, 338, 437
SduI	GDGCHC	1 cut(s)	259
SetI	ASST	8 cut(s)	19, 77, 253, 267, 410, 466, 493, 624
SfaNI	GCATC	1 cut(s)	516
SmiMI	CAYNNNNRTG	1 cut(s)	597
SmlI	CTYRAG	1 cut(s)	51
SmoI	CTYRAG	1 cut(s)	51
SphI	GCATGC	1 cut(s)	562
Sse9I	AATT	2 cut(s)	138, 595
SsiI	CCGC	8 cut(s)	57, 104, 237, 325, 371, 383, 569, 572
StyD4I	CCNGG	3 cut(s)	209, 336, 435
StyI	CCWWGG	1 cut(s)	354
TaiI	ACGT	4 cut(s)	77, 267, 410, 624
TasI	AATT	2 cut(s)	138, 595
TauI	GCSGC	4 cut(s)	328, 374, 386, 574
TfiI	GAWTC	3 cut(s)	333, 427, 589
TseFI	GTSAC	2 cut(s)	131, 617
TseI	GCWGC	3 cut(s)	248, 269, 374
Tsp45I	GTSAC	2 cut(s)	131, 617
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	272
Van91I	CCANNNNNTGG	1 cut(s)	216
XceI	RCATGY	3 cut(s)	300, 351, 562
ZraI	GACGTC	1 cut(s)	265

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.