Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0010680

Physical Location & Seq

Genomic Coordinates Reverse (-)

50627694 .. 50628215

Gene Structure 522 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0397000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGGCAAGCAGGAAGCTTTTCGTTGTCGTCTCATCCCTCCTCCTCATCTCATTGGCATCCTTCCCTTCCATAACTGCCACCACATACCAGCCAAAGGCCGCTGTGCATGTGGTTGTGGAAGGCATGGTATACTGCCAGAGCTGTGACTACCGTGGATGGTCCTTGACCGGAGCTACCCCACTCCCTTTGGCTAAAGTCAGCGTCGTTTGCAAAAACAACATAGGCCAAGTCGGTTACTACAAGACTTTCCAAGCAAACGCTAACGGCTACGTGTATGCTGAGCTAGAAGGCAACAAAATGAACCGTGCATTGGACTATCCCCTTCAGAACTGCAGAGTGAAGCTAGTTTCTTCTCCACTTCAAAAGTGCAACCTTGCCACCAATGTCAATTATGGCATTGATGGCGCCCATCTTCGTTCCGAAGGCAAGAGTTACACGAGTCCGAATTATAATGCTGTCATATATGCTGCAGGGCCCTTTGCTTTCCGTCCTTCTCGTTGTCCTTACACTACCCACCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009631 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010035 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042221 GO:0043436 GO:0043565 GO:0044237 GO:0044281 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

173

Amino Acids

18.94

Weight (kDa)

9.33

Isoelectric Point (pI)

41.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pollen_Ole_e_1	PF01190	39 - 135	4.4e-24	Pollen protein Ole e 1 like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010680)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25470 AT4G25480 AT4G25490 AT5G51990
fragaria_vesca	FvH4_7g28950
malus_domestica	MD01G1196100.v1.1 MD07G1262900.v1.1
prunus_persica	Prupe.2G289500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0376641
rosa_laevigata	RLG00000026586
rosa_multiflora	Rmu_sc0005594.1_g000005 Rmu_sc0009616.1_g000001
rosa_roxburghii	Rroxscaffold_4G00281920 Rroxscaffold_4G00308350
rosa_rugosa	Rorug01G0397000
rosa_samantha	Rh1AG413900 Rh1BG373300 Rh1CG387200 Rh1DG404300
rosa_wichuraiana	Rw1G036310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	450
AccB1I	GGYRCC	1 cut(s)	404
AccI	GTMKAC	1 cut(s)	129
AciI	CCGC	1 cut(s)	99
AcuI	CTGAAG	1 cut(s)	308
AcyI	GRCGYC	1 cut(s)	405
AfiI	CCNNNNNNNGG	2 cut(s)	94, 310
AflIII	ACRYGT	1 cut(s)	270
AgsI	TTSAA	1 cut(s)	362
AjuI	GAANNNNNNNTTGG	2 cut(s)	293, 325
AluBI	AGCT	5 cut(s)	16, 141, 173, 283, 343
AluI	AGCT	5 cut(s)	16, 141, 173, 283, 343
Alw26I	GTCTC	1 cut(s)	34
AoxI	GGCC	3 cut(s)	96, 223, 473
ApaI	GGGCCC	1 cut(s)	477
ApeKI	GCWGC	1 cut(s)	467
Asp700I	GAANNNNTTC	1 cut(s)	17
AspLEI	GCGC	1 cut(s)	407
AspS9I	GGNCC	3 cut(s)	159, 473, 474
AvaII	GGWCC	1 cut(s)	159
BaeGI	GKGCMC	1 cut(s)	477
BanI	GGYRCC	1 cut(s)	404
BanII	GRGCYC	1 cut(s)	477
BauI	CACGAG	1 cut(s)	436
BbvI	GCAGC	1 cut(s)	454
BccI	CCATC	3 cut(s)	150, 395, 417
BceAI	ACGGC	1 cut(s)	280
BcoDI	GTCTC	1 cut(s)	34
BfaI	CTAG	2 cut(s)	284, 344
BfmI	CTRYAG	2 cut(s)	331, 468
BfoI	RGCGCY	1 cut(s)	408
BisI	GCNGC	2 cut(s)	99, 468
BlpI	GCTNAGC	1 cut(s)	279
BlsI	GCNGC	2 cut(s)	100, 469
Bme18I	GGWCC	1 cut(s)	159
BmgT120I	GGNCC	3 cut(s)	159, 473, 474
BmiI	GGNNCC	2 cut(s)	406, 475
BmsI	GCATC	1 cut(s)	65
Bpu1102I	GCTNAGC	1 cut(s)	279
BsaAI	YACGTR	1 cut(s)	271
BsaHI	GRCGYC	1 cut(s)	405
BsaJI	CCNNGG	1 cut(s)	151
BsaWI	WCCGGW	1 cut(s)	167
Bsc4I	CCNNNNNNNGG	2 cut(s)	94, 310
BseDI	CCNNGG	1 cut(s)	151
BseGI	GGATG	3 cut(s)	32, 56, 161
BseLI	CCNNNNNNNGG	2 cut(s)	94, 310
BseMII	CTCAG	1 cut(s)	270
BseRI	GAGGAG	2 cut(s)	29, 32
BseSI	GKGCMC	1 cut(s)	477
BseXI	GCAGC	1 cut(s)	454
BshFI	GGCC	3 cut(s)	98, 225, 475
BshNI	GGYRCC	1 cut(s)	404
BsiSI	CCGG	1 cut(s)	168
BslI	CCNNNNNNNGG	2 cut(s)	94, 310
BsmAI	GTCTC	1 cut(s)	34
BsmBI	CGTCTC	1 cut(s)	34
BsnI	GGCC	3 cut(s)	98, 225, 475
Bsp120I	GGGCCC	1 cut(s)	473
Bsp1286I	GDGCHC	1 cut(s)	477
Bsp1720I	GCTNAGC	1 cut(s)	279
BspACI	CCGC	1 cut(s)	99
BspANI	GGCC	3 cut(s)	98, 225, 475
BspCNI	CTCAG	1 cut(s)	271
BspLI	GGNNCC	2 cut(s)	406, 475
BspMAI	CTGCAG	2 cut(s)	335, 472
BspT107I	GGYRCC	1 cut(s)	404
BssECI	CCNNGG	1 cut(s)	151
BssNAI	GTATAC	1 cut(s)	130
BssNI	GRCGYC	1 cut(s)	405
BssSI	CACGAG	1 cut(s)	436
Bst1107I	GTATAC	1 cut(s)	130
Bst2BI	CACGAG	1 cut(s)	436
Bst4CI	ACNGT	2 cut(s)	152, 305
BstACI	GRCGYC	1 cut(s)	405
BstBAI	YACGTR	1 cut(s)	271
BstC8I	GCNNGC	1 cut(s)	7
BstDEI	CTNAG	1 cut(s)	279
BstDSI	CCRYGG	1 cut(s)	151
BstF5I	GGATG	3 cut(s)	32, 56, 161
BstH2I	RGCGCY	1 cut(s)	408
BstHHI	GCGC	1 cut(s)	407
BstMAI	GTCTC	1 cut(s)	34
BstMWI	GCNNNNNNNGC	2 cut(s)	207, 402
BstNSI	RCATGY	1 cut(s)	110
BstSFI	CTRYAG	2 cut(s)	331, 468
BstSLI	GKGCMC	1 cut(s)	477
BstV1I	GCAGC	1 cut(s)	454
BstZ17I	GTATAC	1 cut(s)	130
BsuRI	GGCC	3 cut(s)	98, 225, 475
BtgI	CCRYGG	1 cut(s)	151
BtsCI	GGATG	3 cut(s)	32, 56, 161
Cac8I	GCNNGC	1 cut(s)	7
CfoI	GCGC	1 cut(s)	407
Cfr13I	GGNCC	3 cut(s)	159, 473, 474
CseI	GACGC	1 cut(s)	190
CspCI	CAANNNNNGTGG	2 cut(s)	168, 203
CviAII	CATG	2 cut(s)	107, 124
DdeI	CTNAG	1 cut(s)	279
DinI	GGCGCC	1 cut(s)	406
Eco24I	GRGCYC	1 cut(s)	477
Eco47I	GGWCC	1 cut(s)	159
Eco57I	CTGAAG	1 cut(s)	308
EcoO109I	RGGNCCY	2 cut(s)	473, 474
EcoT38I	GRGCYC	1 cut(s)	477
EgeI	GGCGCC	1 cut(s)	406
EheI	GGCGCC	1 cut(s)	406
Esp3I	CGTCTC	1 cut(s)	34
FaeI	CATG	2 cut(s)	110, 127
FatI	CATG	2 cut(s)	106, 123
FblI	GTMKAC	1 cut(s)	129
Fnu4HI	GCNGC	2 cut(s)	99, 468
FokI	GGATG	3 cut(s)	19, 43, 168
FriOI	GRGCYC	1 cut(s)	477
Fsp4HI	GCNGC	2 cut(s)	99, 468
FspBI	CTAG	2 cut(s)	284, 344
GlaI	GCGC	1 cut(s)	406
GluI	GCNGC	2 cut(s)	99, 468
HaeII	RGCGCY	1 cut(s)	408
HaeIII	GGCC	3 cut(s)	98, 225, 475
HapII	CCGG	1 cut(s)	168
HgaI	GACGC	1 cut(s)	190
HhaI	GCGC	1 cut(s)	407
Hin1I	GRCGYC	1 cut(s)	405
Hin1II	CATG	2 cut(s)	110, 127
Hin6I	GCGC	1 cut(s)	405
HinP1I	GCGC	1 cut(s)	405
HindIII	AAGCTT	1 cut(s)	14
HinfI	GANTC	1 cut(s)	439
HpaII	CCGG	1 cut(s)	168
Hpy166II	GTNNAC	1 cut(s)	130
Hpy188I	TCNGA	3 cut(s)	327, 421, 444
Hpy8I	GTNNAC	1 cut(s)	130
Hpy99I	CGWCG	1 cut(s)	206
HpyAV	CCTTC	7 cut(s)	70, 75, 113, 281, 332, 416, 501
HpyCH4III	ACNGT	2 cut(s)	152, 305
HpyCH4IV	ACGT	1 cut(s)	270
HpyCH4V	TGCA	6 cut(s)	106, 210, 308, 333, 369, 470
HpyF10VI	GCNNNNNNNGC	2 cut(s)	207, 402
HpyF3I	CTNAG	1 cut(s)	279
HpySE526I	ACGT	1 cut(s)	270
Hsp92I	GRCGYC	1 cut(s)	405
Hsp92II	CATG	2 cut(s)	110, 127
HspAI	GCGC	1 cut(s)	405
KasI	GGCGCC	1 cut(s)	404
LmnI	GCTCC	1 cut(s)	170
LpnPI	CCDG	4 cut(s)	101, 149, 181, 456
Lsp1109I	GCAGC	1 cut(s)	454
LweI	GCATC	1 cut(s)	65
MaeI	CTAG	2 cut(s)	284, 344
MaeII	ACGT	1 cut(s)	270
MaeIII	GTNAC	3 cut(s)	143, 233, 431
MboII	GAAGA	2 cut(s)	342, 404
MhlI	GDGCHC	1 cut(s)	477
MluCI	AATT	2 cut(s)	388, 445
Mly113I	GGCGCC	1 cut(s)	405
MlyI	GAGTC	1 cut(s)	448
MnlI	CCTC	3 cut(s)	47, 50, 53
MroXI	GAANNNNTTC	1 cut(s)	17
MspA1I	CMGCKG	1 cut(s)	101
MspI	CCGG	1 cut(s)	168
MwoI	GCNNNNNNNGC	2 cut(s)	207, 402
NarI	GGCGCC	1 cut(s)	405
NlaIII	CATG	2 cut(s)	110, 127
NlaIV	GGNNCC	2 cut(s)	406, 475
NmuCI	GTSAC	1 cut(s)	143
NspI	RCATGY	1 cut(s)	110
PdmI	GAANNNNTTC	1 cut(s)	17
PkrI	GCNGC	2 cut(s)	100, 469
PleI	GAGTC	1 cut(s)	447
PluTI	GGCGCC	1 cut(s)	408
PpsI	GAGTC	1 cut(s)	447
Ppu21I	YACGTR	1 cut(s)	271
PsiI	TTATAA	1 cut(s)	450
PspN4I	GGNNCC	2 cut(s)	406, 475
PspOMI	GGGCCC	1 cut(s)	473
PspPI	GGNCC	3 cut(s)	159, 473, 474
PstI	CTGCAG	2 cut(s)	335, 472
SatI	GCNGC	2 cut(s)	99, 468
Sau96I	GGNCC	3 cut(s)	159, 473, 474
SchI	GAGTC	1 cut(s)	448
SduI	GDGCHC	1 cut(s)	477
SetI	ASST	7 cut(s)	18, 143, 175, 273, 285, 345, 375
SfaNI	GCATC	1 cut(s)	65
SfcI	CTRYAG	2 cut(s)	331, 468
SfoI	GGCGCC	1 cut(s)	406
SinI	GGWCC	1 cut(s)	159
Sse9I	AATT	2 cut(s)	388, 445
SsiI	CCGC	1 cut(s)	99
SspDI	GGCGCC	1 cut(s)	404
SspMI	CTAG	2 cut(s)	284, 344
TaaI	ACNGT	2 cut(s)	152, 305
TaiI	ACGT	1 cut(s)	273
TasI	AATT	2 cut(s)	388, 445
TauI	GCSGC	1 cut(s)	101
TseFI	GTSAC	1 cut(s)	143
TseI	GCWGC	1 cut(s)	467
Tsp45I	GTSAC	1 cut(s)	143
TspDTI	ATGAA	1 cut(s)	314
TspGWI	ACGGA	1 cut(s)	476
VpaK11BI	GGWCC	1 cut(s)	159
XceI	RCATGY	1 cut(s)	110
XmiI	GTMKAC	1 cut(s)	129
XmnI	GAANNNNTTC	1 cut(s)	17
XspI	CTAG	2 cut(s)	284, 344

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.