Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0010680

Physical Location & Seq

Genomic Coordinates Reverse (-)

21384363 .. 21385052

Gene Structure 690 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g28950.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGGATGGTGGTTTCTCAGCTTTGTCTCAGTACTATGATCACAACCCAGTTGGTTCGGATTTGCTGGAATCTTCGTCTCATTCCGATAACAACAGCGGCGGGGTTGGACGGATGGCCTTGTCAGACGAGGAGGTCATGCTGGCGGGGACGTACCCGAAGAAGAGGGCGGGAAGGAAGAAATTCAAGGAGACGAGGCACCCGGTGTACCGCGGCGTGAGGAGGAGAAACTCCGGCAAGTGGGTTTGCGAGGTTCGTGAGCCGAACAAGAAGACGAGGATTTGGCTTGGGACTTTCCCCACTGCCGAAATGGCTGCGCGTGCGCACGACGTGGCGGCGATTGCCTTGAGGGGCCGGTCTGCGTGTTTGAACTTTGCCGACTCGGCGTGGCGGCTGCCAGTGCCGGCTTCTAATAGTGCTAAGGACATACAGACGGCGGCTGCCGAGGCGGCGGAGGCGTTTCGGCCTAATGGGGAGGAATCGGAAGTTGTGTCGAAAGCGGCGGAGGCGGTGGAAGCGGAATCGGAACAACCGGTGTTTTATATGGACGTCGAGGAGGATGTGTTTGGGATGCCGGGGTTGCTGGCCAACATGGCGGAAGGGATGCTACTGCCGCCTCCTCAATATAGTGGCTACGGCGGCGATGACATGGAAGGTTATGCTGATGTGTCACTATGGAGTTACTCCATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009631 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010035 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042221 GO:0043436 GO:0043565 GO:0044237 GO:0044281 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

230

Amino Acids

24.96

Weight (kDa)

5.13

Isoelectric Point (pI)

55.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	67 - 117	3.1e-16	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0010680)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25470 AT4G25480 AT4G25490 AT5G51990
fragaria_vesca	FvH4_7g28950
malus_domestica	MD01G1196100.v1.1 MD07G1262900.v1.1
prunus_persica	Prupe.2G289500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0376641
rosa_laevigata	RLG00000026586
rosa_multiflora	Rmu_sc0005594.1_g000005 Rmu_sc0009616.1_g000001
rosa_roxburghii	Rroxscaffold_4G00281920 Rroxscaffold_4G00308350
rosa_rugosa	Rorug01G0397000
rosa_samantha	Rh1AG413900 Rh1BG373300 Rh1CG387200 Rh1DG404300
rosa_wichuraiana	Rw1G036310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	131
AatII	GACGTC	1 cut(s)	549
Acc16I	TGCGCA	1 cut(s)	321
AccB1I	GGYRCC	1 cut(s)	195
AccII	CGCG	2 cut(s)	210, 316
AcoI	YGGCCR	1 cut(s)	582
AcsI	RAATTY	1 cut(s)	179
AcyI	GRCGYC	1 cut(s)	546
AdeI	CACNNNGTG	2 cut(s)	202, 328
AfaI	GTAC	3 cut(s)	32, 152, 206
AfiI	CCNNNNNNNGG	1 cut(s)	237
AgeI	ACCGGT	1 cut(s)	529
AgsI	TTSAA	2 cut(s)	184, 367
AjiI	CACGTC	1 cut(s)	328
AluBI	AGCT	1 cut(s)	20
AluI	AGCT	1 cut(s)	20
Alw26I	GTCTC	3 cut(s)	30, 81, 182
AoxI	GGCC	4 cut(s)	114, 349, 461, 582
ApeKI	GCWGC	3 cut(s)	311, 391, 437
ApoI	RAATTY	1 cut(s)	179
AsiGI	ACCGGT	1 cut(s)	529
Asp700I	GAANNNNTTC	1 cut(s)	179
AspLEI	GCGC	2 cut(s)	316, 322
AspS9I	GGNCC	1 cut(s)	349
AsuC2I	CCSGG	2 cut(s)	200, 573
BalI	TGGCCA	1 cut(s)	584
BanI	GGYRCC	1 cut(s)	195
BarI	GAAGNNNNNNTAC	2 cut(s)	588, 620
BbsI	GAAGAC	1 cut(s)	275
BbvI	GCAGC	3 cut(s)	298, 378, 424
BccI	CCATC	1 cut(s)	106
BceAI	ACGGC	2 cut(s)	447, 649
BcgI	CGANNNNNNTGC	2 cut(s)	293, 327
BclI	TGATCA	1 cut(s)	37
BcnI	CCSGG	2 cut(s)	200, 573
BcoDI	GTCTC	3 cut(s)	30, 81, 182
BglI	GCCNNNNNGGC	4 cut(s)	308, 380, 446, 590
BmcAI	AGTACT	1 cut(s)	32
Bme1390I	CCNGG	2 cut(s)	200, 573
BmgBI	CACGTC	1 cut(s)	328
BmgT120I	GGNCC	1 cut(s)	349
BmiI	GGNNCC	2 cut(s)	197, 350
BmrFI	CCNGG	2 cut(s)	200, 573
BmrI	ACTGGG	1 cut(s)	41
BmsI	GCATC	2 cut(s)	558, 591
BmuI	ACTGGG	1 cut(s)	41
BpiI	GAAGAC	1 cut(s)	275
Bpu10I	CCTNAGC	1 cut(s)	417
BpuEI	CTTGAG	1 cut(s)	364
BpuMI	CCSGG	2 cut(s)	200, 573
BsaHI	GRCGYC	1 cut(s)	546
BsaJI	CCNNGG	3 cut(s)	208, 441, 572
BsaWI	WCCGGW	1 cut(s)	529
BsaXI	ACNNNNNCTCC	2 cut(s)	545, 575
Bsc4I	CCNNNNNNNGG	1 cut(s)	237
Bse118I	RCCGGY	3 cut(s)	351, 400, 529
Bse1I	ACTGG	2 cut(s)	47, 395
BseDI	CCNNGG	3 cut(s)	208, 441, 572
BseGI	GGATG	5 cut(s)	10, 117, 562, 573, 606
BseLI	CCNNNNNNNGG	1 cut(s)	237
BseMII	CTCAG	2 cut(s)	30, 41
BseNI	ACTGG	2 cut(s)	47, 395
BseRI	GAGGAG	5 cut(s)	143, 232, 235, 566, 606
BseXI	GCAGC	3 cut(s)	298, 378, 424
Bsh1236I	CGCG	2 cut(s)	210, 316
BshFI	GGCC	4 cut(s)	116, 351, 463, 584
BshNI	GGYRCC	1 cut(s)	195
BshTI	ACCGGT	1 cut(s)	529
BsiSI	CCGG	6 cut(s)	200, 231, 352, 401, 530, 572
BslFI	GGGAC	2 cut(s)	160, 301
BslI	CCNNNNNNNGG	1 cut(s)	237
BsmAI	GTCTC	3 cut(s)	30, 81, 182
BsmBI	CGTCTC	2 cut(s)	81, 182
BsmFI	GGGAC	2 cut(s)	160, 301
BsnI	GGCC	4 cut(s)	116, 351, 463, 584
Bsp143I	GATC	1 cut(s)	37
BspANI	GGCC	4 cut(s)	116, 351, 463, 584
BspCNI	CTCAG	2 cut(s)	29, 40
BspFNI	CGCG	2 cut(s)	210, 316
BspLI	GGNNCC	2 cut(s)	197, 350
BspT107I	GGYRCC	1 cut(s)	195
BsrFI	RCCGGY	3 cut(s)	351, 400, 529
BsrI	ACTGG	2 cut(s)	47, 395
BssAI	RCCGGY	3 cut(s)	351, 400, 529
BssECI	CCNNGG	3 cut(s)	208, 441, 572
BssMI	GATC	1 cut(s)	37
BssNI	GRCGYC	1 cut(s)	546
Bst6I	CTCTTC	1 cut(s)	155
BstACI	GRCGYC	1 cut(s)	546
BstC8I	GCNNGC	4 cut(s)	141, 318, 402, 582
BstDEI	CTNAG	3 cut(s)	16, 27, 417
BstDSI	CCRYGG	1 cut(s)	208
BstF5I	GGATG	5 cut(s)	10, 117, 562, 573, 606
BstFNI	CGCG	2 cut(s)	210, 316
BstHHI	GCGC	2 cut(s)	316, 322
BstKTI	GATC	1 cut(s)	40
BstMAI	GTCTC	3 cut(s)	30, 81, 182
BstMBI	GATC	1 cut(s)	37
BstSCI	CCNGG	2 cut(s)	198, 571
BstUI	CGCG	2 cut(s)	210, 316
BstV1I	GCAGC	3 cut(s)	298, 378, 424
BstV2I	GAAGAC	1 cut(s)	275
BsuRI	GGCC	4 cut(s)	116, 351, 463, 584
BtgI	CCRYGG	1 cut(s)	208
BtgZI	GCGATG	1 cut(s)	654
BtrI	CACGTC	1 cut(s)	328
BtsCI	GGATG	5 cut(s)	10, 117, 562, 573, 606
BtsI	GCAGTG	1 cut(s)	297
BtsIMutI	CAGTG	2 cut(s)	297, 402
Cac8I	GCNNGC	4 cut(s)	141, 318, 402, 582
CfoI	GCGC	2 cut(s)	316, 322
Cfr10I	RCCGGY	3 cut(s)	351, 400, 529
Cfr13I	GGNCC	1 cut(s)	349
Cfr42I	CCGCGG	1 cut(s)	211
Csp6I	GTAC	3 cut(s)	31, 151, 205
CspAI	ACCGGT	1 cut(s)	529
CviAII	CATG	3 cut(s)	136, 589, 646
CviQI	GTAC	3 cut(s)	31, 151, 205
DdeI	CTNAG	3 cut(s)	16, 27, 417
DpnI	GATC	1 cut(s)	39
DpnII	GATC	1 cut(s)	37
DraIII	CACNNNGTG	2 cut(s)	202, 328
DrdI	GACNNNNNNGTC	1 cut(s)	131
DseDI	GACNNNNNNGTC	1 cut(s)	131
EaeI	YGGCCR	1 cut(s)	582
Eam1104I	CTCTTC	1 cut(s)	155
EarI	CTCTTC	1 cut(s)	155
EciI	GGCGGA	3 cut(s)	464, 515, 608
Esp3I	CGTCTC	2 cut(s)	81, 182
FaeI	CATG	3 cut(s)	139, 592, 649
FaqI	GGGAC	2 cut(s)	160, 301
FatI	CATG	3 cut(s)	135, 588, 645
FauI	CCCGC	3 cut(s)	92, 136, 160
FbaI	TGATCA	1 cut(s)	37
FokI	GGATG	5 cut(s)	17, 124, 569, 580, 613
FspAI	RTGCGCAY	1 cut(s)	321
FspI	TGCGCA	1 cut(s)	321
GlaI	GCGC	2 cut(s)	315, 321
HaeIII	GGCC	4 cut(s)	116, 351, 463, 584
HapII	CCGG	6 cut(s)	200, 231, 352, 401, 530, 572
HhaI	GCGC	2 cut(s)	316, 322
Hin1I	GRCGYC	1 cut(s)	546
Hin1II	CATG	3 cut(s)	139, 592, 649
Hin6I	GCGC	2 cut(s)	314, 320
HinP1I	GCGC	2 cut(s)	314, 320
HinfI	GANTC	4 cut(s)	68, 377, 476, 518
HpaII	CCGG	6 cut(s)	200, 231, 352, 401, 530, 572
Hpy166II	GTNNAC	1 cut(s)	205
Hpy188I	TCNGA	5 cut(s)	58, 85, 124, 481, 523
Hpy188III	TCNNGA	1 cut(s)	254
Hpy8I	GTNNAC	1 cut(s)	205
Hpy99I	CGWCG	2 cut(s)	329, 551
HpyAV	CCTTC	3 cut(s)	165, 590, 644
HpyCH4IV	ACGT	3 cut(s)	149, 327, 546
HpyF3I	CTNAG	3 cut(s)	16, 27, 417
HpySE526I	ACGT	3 cut(s)	149, 327, 546
Hsp92I	GRCGYC	1 cut(s)	546
Hsp92II	CATG	3 cut(s)	139, 592, 649
HspAI	GCGC	2 cut(s)	314, 320
KroI	GCCGGC	1 cut(s)	400
KroNI	GCCGGC	1 cut(s)	402
Ksp22I	TGATCA	1 cut(s)	37
KspI	CCGCGG	1 cut(s)	211
Kzo9I	GATC	1 cut(s)	37
Lsp1109I	GCAGC	3 cut(s)	298, 378, 424
LweI	GCATC	2 cut(s)	558, 591
MaeII	ACGT	3 cut(s)	149, 327, 546
MaeIII	GTNAC	2 cut(s)	666, 677
MalI	GATC	1 cut(s)	39
MboI	GATC	1 cut(s)	37
MboII	GAAGA	5 cut(s)	63, 169, 172, 187, 280
MlsI	TGGCCA	1 cut(s)	584
MluCI	AATT	1 cut(s)	179
MluNI	TGGCCA	1 cut(s)	584
MlyI	GAGTC	1 cut(s)	371
MmeI	TCCRAC	1 cut(s)	85
Mox20I	TGGCCA	1 cut(s)	584
MroNI	GCCGGC	1 cut(s)	400
MroXI	GAANNNNTTC	1 cut(s)	179
MscI	TGGCCA	1 cut(s)	584
Msp20I	TGGCCA	1 cut(s)	584
MspA1I	CMGCKG	2 cut(s)	96, 210
MspI	CCGG	6 cut(s)	200, 231, 352, 401, 530, 572
MspR9I	CCNGG	2 cut(s)	200, 573
MvnI	CGCG	2 cut(s)	210, 316
NaeI	GCCGGC	1 cut(s)	402
NciI	CCSGG	2 cut(s)	200, 573
NdeII	GATC	1 cut(s)	37
NgoMIV	GCCGGC	1 cut(s)	400
NlaIII	CATG	3 cut(s)	139, 592, 649
NlaIV	GGNNCC	2 cut(s)	197, 350
NmeAIII	GCCGAG	2 cut(s)	359, 466
NmuCI	GTSAC	1 cut(s)	666
NsbI	TGCGCA	1 cut(s)	321
PdiI	GCCGGC	1 cut(s)	402
PdmI	GAANNNNTTC	1 cut(s)	179
PfeI	GAWTC	3 cut(s)	68, 476, 518
PinAI	ACCGGT	1 cut(s)	529
PleI	GAGTC	1 cut(s)	371
PpsI	GAGTC	1 cut(s)	371
PspN4I	GGNNCC	2 cut(s)	197, 350
PspPI	GGNCC	1 cut(s)	349
RsaI	GTAC	3 cut(s)	32, 152, 206
RsaNI	GTAC	3 cut(s)	31, 151, 205
SacII	CCGCGG	1 cut(s)	211
Sau3AI	GATC	1 cut(s)	37
Sau96I	GGNCC	1 cut(s)	349
ScaI	AGTACT	1 cut(s)	32
SchI	GAGTC	1 cut(s)	371
ScrFI	CCNGG	2 cut(s)	200, 573
SetI	ASST	7 cut(s)	22, 135, 152, 252, 330, 549, 655
SfaNI	GCATC	2 cut(s)	558, 591
Sfr303I	CCGCGG	1 cut(s)	211
SgrBI	CCGCGG	1 cut(s)	211
SmlI	CTYRAG	1 cut(s)	343
SmoI	CTYRAG	1 cut(s)	343
Sse9I	AATT	1 cut(s)	179
StyD4I	CCNGG	2 cut(s)	198, 571
TaiI	ACGT	3 cut(s)	152, 330, 549
TaqI	TCGA	2 cut(s)	491, 549
TasI	AATT	1 cut(s)	179
TatI	WGTACW	1 cut(s)	30
TauI	GCSGC	9 cut(s)	99, 213, 335, 391, 437, 449, 500, 613, 639
TfiI	GAWTC	3 cut(s)	68, 476, 518
TscAI	CASTG	2 cut(s)	304, 402
TseFI	GTSAC	1 cut(s)	666
TseI	GCWGC	3 cut(s)	311, 391, 437
Tsp45I	GTSAC	1 cut(s)	666
TspGWI	ACGGA	1 cut(s)	124
TspRI	CASTG	2 cut(s)	304, 402
XapI	RAATTY	1 cut(s)	179
XcmI	CCANNNNNNNNNTGG	1 cut(s)	304
XmnI	GAANNNNTTC	1 cut(s)	179
ZraI	GACGTC	1 cut(s)	547
ZrmI	AGTACT	1 cut(s)	32

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.