Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010680

Physical Location & Seq

Genomic Coordinates Reverse (-)

21116877 .. 21117860

Gene Structure 984 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G51990.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGAATCCATTTTACTCTACATTCCCAGACTCGTTTCTCTCAATCTCCGATCATAGATCTCCGGTTTCAGACAGTAGTGAGTGTTCACCAAAGTTAGCTTCAAGTTGTCCAAAGAAACGAGCTGGGAGGAAGAAGTTTCGTGAGACACGTCATCCGATTTACAGAGGAGTTCGTCAGAGGAATTCTGGTAAATGGGTTTGTGAAGTTAGAGAGCCTAATAAGAAATCTAGGATTTGGTTAGGTACTTTTCCGACGGTTGAAATGGCTGCTCGTGCTCATGATGTTGCTGCTTTAGCTCTTCGTGGTCGCTCTGCTTGTCTCAATTTCGCTGATTCTGCTTGGCGGCTTCGTATTCCTGAGACTACTTGTCCTAAGGAGATTCAGAAAGCTGCGTCTGAAGCTGCAATGGCGTTTCAGAATGAGACTACGACGGAGGGATCTAAAACTGCGGCGGAGGCAGAGGAGGCGGCAGGGGAGGGGGTGAGGGAGGGGGAGAGGAGGGCGGAGGAGCAGAATGGTGGTGTGTTTTATATGGATGATGAGGCGCTTTTGGGGATGCCCAACTTTTTTGAGAATATGGCGGAGGGGATGCTTTTGCCGCCGCCGGAAGTTGGCTGGAATCATAACGACTTTGACGGAGTGGGTGACGTGTCACTCTGGAGTTTTGACGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009631 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010035 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042221 GO:0043436 GO:0043565 GO:0044237 GO:0044281 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

224

Amino Acids

24.96

Weight (kDa)

5.56

Isoelectric Point (pI)

62.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	53 - 102	9.7e-16	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0010680)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25470 AT4G25480 AT4G25490 AT5G51990
fragaria_vesca	FvH4_7g28950
malus_domestica	MD01G1196100.v1.1 MD07G1262900.v1.1
prunus_persica	Prupe.2G289500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0376641
rosa_laevigata	RLG00000026586
rosa_multiflora	Rmu_sc0005594.1_g000005 Rmu_sc0009616.1_g000001
rosa_roxburghii	Rroxscaffold_4G00281920 Rroxscaffold_4G00308350
rosa_rugosa	Rorug01G0397000
rosa_samantha	Rh1AG413900 Rh1BG373300 Rh1CG387200 Rh1DG404300
rosa_wichuraiana	Rw1G036310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	8 cut(s)	343, 449, 452, 467, 503, 581, 599, 602
AclWI	GGATC	1 cut(s)	445
AcsI	RAATTY	1 cut(s)	181
AcuI	CTGAAG	1 cut(s)	417
AfaI	GTAC	1 cut(s)	244
AfiI	CCNNNNNNNGG	1 cut(s)	611
AflIII	ACRYGT	2 cut(s)	146, 648
AgsI	TTSAA	2 cut(s)	102, 260
AhdI	GACNNNNNGTC	1 cut(s)	366
AjiI	CACGTC	2 cut(s)	149, 649
AjuI	GAANNNNNNNTTGG	2 cut(s)	82, 114
AluBI	AGCT	5 cut(s)	98, 122, 296, 389, 401
AluI	AGCT	5 cut(s)	98, 122, 296, 389, 401
Alw21I	GWGCWC	1 cut(s)	277
Alw26I	GTCTC	4 cut(s)	137, 323, 353, 416
AlwI	GGATC	1 cut(s)	445
ApeKI	GCWGC	4 cut(s)	266, 287, 389, 401
ApoI	RAATTY	1 cut(s)	181
AspLEI	GCGC	1 cut(s)	547
AsuHPI	GGTGA	3 cut(s)	78, 493, 656
AxyI	CCTNAGG	1 cut(s)	372
BauI	CACGAG	1 cut(s)	270
Bbv12I	GWGCWC	1 cut(s)	277
BbvI	GCAGC	4 cut(s)	253, 274, 376, 388
BcoDI	GTCTC	4 cut(s)	137, 323, 353, 416
BfaI	CTAG	1 cut(s)	228
BfoI	RGCGCY	1 cut(s)	548
BglII	AGATCT	1 cut(s)	56
BisI	GCNGC	9 cut(s)	267, 288, 344, 390, 402, 450, 468, 599, 602
BlsI	GCNGC	9 cut(s)	268, 289, 345, 391, 403, 451, 469, 600, 603
BmeRI	GACNNNNNGTC	1 cut(s)	366
BmgBI	CACGTC	2 cut(s)	149, 649
BmsI	GCATC	2 cut(s)	546, 579
BsaWI	WCCGGW	1 cut(s)	61
Bsc4I	CCNNNNNNNGG	1 cut(s)	611
Bse21I	CCTNAGG	1 cut(s)	372
Bse3DI	GCAATG	1 cut(s)	411
BseGI	GGATG	4 cut(s)	151, 541, 561, 594
BseLI	CCNNNNNNNGG	1 cut(s)	611
BseMI	GCAATG	1 cut(s)	411
BseMII	CTCAG	1 cut(s)	348
BseRI	GAGGAG	4 cut(s)	180, 476, 511, 521
BseXI	GCAGC	4 cut(s)	253, 274, 376, 388
BseYI	CCCAGC	1 cut(s)	122
BsiHKAI	GWGCWC	1 cut(s)	277
BsiSI	CCGG	2 cut(s)	62, 605
BslI	CCNNNNNNNGG	1 cut(s)	611
BsmAI	GTCTC	4 cut(s)	137, 323, 353, 416
Bsp1286I	GDGCHC	1 cut(s)	277
Bsp143I	GATC	3 cut(s)	49, 56, 437
BspACI	CCGC	8 cut(s)	343, 449, 452, 467, 503, 581, 599, 602
BspCNI	CTCAG	1 cut(s)	349
BspHI	TCATGA	1 cut(s)	277
BspPI	GGATC	1 cut(s)	445
BspQI	GCTCTTC	1 cut(s)	303
BsrDI	GCAATG	1 cut(s)	411
BssMI	GATC	3 cut(s)	49, 56, 437
BssSI	CACGAG	1 cut(s)	270
Bst2BI	CACGAG	1 cut(s)	270
Bst4CI	ACNGT	2 cut(s)	74, 256
Bst6I	CTCTTC	1 cut(s)	303
BstDEI	CTNAG	2 cut(s)	357, 372
BstF5I	GGATG	4 cut(s)	151, 541, 561, 594
BstH2I	RGCGCY	1 cut(s)	548
BstHHI	GCGC	1 cut(s)	547
BstKTI	GATC	3 cut(s)	52, 59, 440
BstMAI	GTCTC	4 cut(s)	137, 323, 353, 416
BstMBI	GATC	3 cut(s)	49, 56, 437
BstMWI	GCNNNNNNNGC	8 cut(s)	272, 293, 335, 398, 407, 455, 464, 598
BstV1I	GCAGC	4 cut(s)	253, 274, 376, 388
BstX2I	RGATCY	2 cut(s)	56, 437
BstYI	RGATCY	2 cut(s)	56, 437
Bsu36I	CCTNAGG	1 cut(s)	372
BtrI	CACGTC	2 cut(s)	149, 649
BtsCI	GGATG	4 cut(s)	151, 541, 561, 594
CciI	TCATGA	1 cut(s)	277
CfoI	GCGC	1 cut(s)	547
CseI	GACGC	1 cut(s)	381
Csp6I	GTAC	1 cut(s)	243
CviAII	CATG	1 cut(s)	278
CviJI	RGCY	9 cut(s)	98, 122, 214, 266, 296, 346, 389, 401, 615
CviKI_1	RGCY	9 cut(s)	98, 122, 214, 266, 296, 346, 389, 401, 615
CviQI	GTAC	1 cut(s)	243
DdeI	CTNAG	2 cut(s)	357, 372
DpnI	GATC	3 cut(s)	51, 58, 439
DpnII	GATC	3 cut(s)	49, 56, 437
DriI	GACNNNNNGTC	1 cut(s)	366
Eam1104I	CTCTTC	1 cut(s)	303
Eam1105I	GACNNNNNGTC	1 cut(s)	366
EarI	CTCTTC	1 cut(s)	303
EciI	GGCGGA	3 cut(s)	467, 518, 596
Eco57I	CTGAAG	1 cut(s)	417
Eco81I	CCTNAGG	1 cut(s)	372
EcoRI	GAATTC	1 cut(s)	181
FaeI	CATG	1 cut(s)	281
FaiI	YATR	6 cut(s)	54, 279, 531, 533, 578, 624
FatI	CATG	1 cut(s)	277
Fnu4HI	GCNGC	9 cut(s)	267, 288, 344, 390, 402, 450, 468, 599, 602
FokI	GGATG	4 cut(s)	138, 548, 568, 601
Fsp4HI	GCNGC	9 cut(s)	267, 288, 344, 390, 402, 450, 468, 599, 602
FspBI	CTAG	1 cut(s)	228
GlaI	GCGC	1 cut(s)	546
GluI	GCNGC	9 cut(s)	267, 288, 344, 390, 402, 450, 468, 599, 602
GsaI	CCCAGC	1 cut(s)	126
HaeII	RGCGCY	1 cut(s)	548
HapII	CCGG	2 cut(s)	62, 605
HgaI	GACGC	1 cut(s)	381
HhaI	GCGC	1 cut(s)	547
Hin1II	CATG	1 cut(s)	281
Hin6I	GCGC	1 cut(s)	545
HinP1I	GCGC	1 cut(s)	545
HinfI	GANTC	5 cut(s)	4, 29, 332, 379, 619
HpaII	CCGG	2 cut(s)	62, 605
HphI	GGTGA	3 cut(s)	78, 493, 656
Hpy166II	GTNNAC	1 cut(s)	86
Hpy188I	TCNGA	8 cut(s)	49, 70, 156, 177, 252, 384, 397, 417
Hpy188III	TCNNGA	4 cut(s)	140, 278, 356, 658
Hpy8I	GTNNAC	1 cut(s)	86
Hpy99I	CGWCG	2 cut(s)	256, 433
HpyCH4III	ACNGT	2 cut(s)	74, 256
HpyCH4IV	ACGT	2 cut(s)	148, 648
HpyCH4V	TGCA	1 cut(s)	404
HpyF10VI	GCNNNNNNNGC	8 cut(s)	272, 293, 335, 398, 407, 455, 464, 598
HpyF3I	CTNAG	2 cut(s)	357, 372
HpySE526I	ACGT	2 cut(s)	148, 648
Hsp92II	CATG	1 cut(s)	281
HspAI	GCGC	1 cut(s)	545
Kzo9I	GATC	3 cut(s)	49, 56, 437
LguI	GCTCTTC	1 cut(s)	303
LmnI	GCTCC	1 cut(s)	508
LpnPI	CCDG	9 cut(s)	39, 75, 108, 171, 369, 456, 601, 618, 643
Lsp1109I	GCAGC	4 cut(s)	253, 274, 376, 388
LweI	GCATC	2 cut(s)	546, 579
MaeI	CTAG	1 cut(s)	228
MaeII	ACGT	2 cut(s)	148, 648
MaeIII	GTNAC	2 cut(s)	644, 651
MalI	GATC	3 cut(s)	51, 58, 439
MboI	GATC	3 cut(s)	49, 56, 437
MboII	GAAGA	2 cut(s)	142, 290
MflI	RGATCY	2 cut(s)	56, 437
MhlI	GDGCHC	1 cut(s)	277
MluCI	AATT	2 cut(s)	181, 322
MlyI	GAGTC	1 cut(s)	23
MmeI	TCCRAC	1 cut(s)	275
MspI	CCGG	2 cut(s)	62, 605
MwoI	GCNNNNNNNGC	8 cut(s)	272, 293, 335, 398, 407, 455, 464, 598
NdeII	GATC	3 cut(s)	49, 56, 437
NlaIII	CATG	1 cut(s)	281
NmuCI	GTSAC	2 cut(s)	644, 651
PagI	TCATGA	1 cut(s)	277
PciSI	GCTCTTC	1 cut(s)	303
PcsI	WCGNNNNNNNCGW	1 cut(s)	145
PfeI	GAWTC	4 cut(s)	4, 332, 379, 619
PkrI	GCNGC	9 cut(s)	268, 289, 345, 391, 403, 451, 469, 600, 603
PleI	GAGTC	1 cut(s)	23
PpsI	GAGTC	1 cut(s)	23
PspFI	CCCAGC	1 cut(s)	122
PsrI	GAACNNNNNNTAC	2 cut(s)	67, 99
PsuI	RGATCY	2 cut(s)	56, 437
RsaI	GTAC	1 cut(s)	244
RsaNI	GTAC	1 cut(s)	243
SapI	GCTCTTC	1 cut(s)	303
SatI	GCNGC	9 cut(s)	267, 288, 344, 390, 402, 450, 468, 599, 602
Sau3AI	GATC	3 cut(s)	49, 56, 437
SchI	GAGTC	1 cut(s)	23
SduI	GDGCHC	1 cut(s)	277
SetI	ASST	8 cut(s)	100, 124, 151, 244, 298, 391, 403, 651
SfaNI	GCATC	2 cut(s)	546, 579
Sse9I	AATT	2 cut(s)	181, 322
SsiI	CCGC	8 cut(s)	343, 449, 452, 467, 503, 581, 599, 602
SspMI	CTAG	1 cut(s)	228
TaaI	ACNGT	2 cut(s)	74, 256
TaiI	ACGT	2 cut(s)	151, 651
TasI	AATT	2 cut(s)	181, 322
TauI	GCSGC	5 cut(s)	346, 452, 470, 601, 604
TfiI	GAWTC	4 cut(s)	4, 332, 379, 619
TseFI	GTSAC	2 cut(s)	644, 651
TseI	GCWGC	4 cut(s)	266, 287, 389, 401
Tsp45I	GTSAC	2 cut(s)	644, 651
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	2 cut(s)	446, 651
XapI	RAATTY	1 cut(s)	181
XspI	CTAG	1 cut(s)	228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.