Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0010680

Physical Location & Seq

Genomic Coordinates Forward (+)

4126203 .. 4126898

Gene Structure 696 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00281920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGGATGGTGGATTTTCAGCTTTCCCTCAATACTATGATCATAACACTCAGTACCCATTTGGTTCGGATTTTCCGGAATCATCGTCTCATTCTGACAACAACAGCGGTAATGGCGTTGGTAGGATGAACTTGTCGGACGAGGAGGTCATGCTGGCGGCGACGTACCCGAAGAAGAGGGCGGGAAGGAAGAAGTTCAAGGAGACGAGGCACCCGGTGTACCGCGGCGTAAGGAGGAGGAACTCCGGGAAGTGGGTTTGCGAGGTTCGTGAGCCCAATAAGAAGACGAGAATCTGGCTCGGGACTTTCCCCACTGCAGAAATGGCGGCGCGTGCTCACGACGTGGCTGCGATTTCCTTGAGGGGGCGGTCTGCGTGCTTGAATTTCGCGGACTCGGCGTGGCGGCTGCCGGTGCCGGCTTCTACTAGTGCTAAGGACATACAGACGGCGGCTGCTCAGGCGGCCGAGGCGTTTCGGCCGACCGGGGAGGAATCGGAGGTTGTTTCAGGATCGGTCGCGGCGGCGGAAGCGGAATCGGAACCGGTGTTTTATATGGACGAGGAGGATGTGTTTGGGATGCCGGGGTTGCTGGCAAACATGGCGGAAGGGATGCTACTGTCACCTCCTCATTATAATGGCTACGGCGGCGATGACATGGACGGTTATGCTGACGTGTCACTGTGGAGTTACTCCATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009631 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010035 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042221 GO:0043436 GO:0043565 GO:0044237 GO:0044281 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

231

Amino Acids

25.3

Weight (kDa)

5.3

Isoelectric Point (pI)

56.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	71 - 121	3.7e-16	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010680)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25470 AT4G25480 AT4G25490 AT5G51990
fragaria_vesca	FvH4_7g28950
malus_domestica	MD01G1196100.v1.1 MD07G1262900.v1.1
prunus_persica	Prupe.2G289500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0376641
rosa_laevigata	RLG00000026586
rosa_multiflora	Rmu_sc0005594.1_g000005 Rmu_sc0009616.1_g000001
rosa_roxburghii	Rroxscaffold_4G00281920 Rroxscaffold_4G00308350
rosa_rugosa	Rorug01G0397000
rosa_samantha	Rh1AG413900 Rh1BG373300 Rh1CG387200 Rh1DG404300
rosa_wichuraiana	Rw1G036310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	630
AasI	GACNNNNNNGTC	1 cut(s)	143
AccB1I	GGYRCC	2 cut(s)	207, 409
AccII	CGCG	4 cut(s)	222, 328, 386, 515
AccIII	TCCGGA	1 cut(s)	73
AclWI	GGATC	1 cut(s)	514
AcoI	YGGCCR	2 cut(s)	459, 473
AcsI	RAATTY	1 cut(s)	379
AdeI	CACNNNGTG	2 cut(s)	214, 340
AfaI	GTAC	3 cut(s)	53, 164, 218
AfiI	CCNNNNNNNGG	2 cut(s)	249, 360
AflIII	ACRYGT	1 cut(s)	669
AgeI	ACCGGT	1 cut(s)	538
AgsI	TTSAA	2 cut(s)	196, 379
AhlI	ACTAGT	1 cut(s)	422
AjiI	CACGTC	2 cut(s)	340, 670
AluBI	AGCT	1 cut(s)	20
AluI	AGCT	1 cut(s)	20
Alw21I	GWGCWC	1 cut(s)	334
Alw26I	GTCTC	2 cut(s)	90, 194
AlwI	GGATC	1 cut(s)	514
Ama87I	CYCGRG	1 cut(s)	296
Aor13HI	TCCGGA	1 cut(s)	73
AoxI	GGCC	2 cut(s)	459, 473
ApeKI	GCWGC	3 cut(s)	344, 403, 449
ApoI	RAATTY	1 cut(s)	379
AsiGI	ACCGGT	1 cut(s)	538
Asp700I	GAANNNNTTC	1 cut(s)	191
AspLEI	GCGC	1 cut(s)	328
AsuC2I	CCSGG	4 cut(s)	212, 244, 481, 579
AsuHPI	GGTGA	1 cut(s)	609
AvaI	CYCGRG	1 cut(s)	296
BanI	GGYRCC	2 cut(s)	207, 409
BanII	GRGCYC	1 cut(s)	273
BarI	GAAGNNNNNNTAC	2 cut(s)	594, 626
BbsI	GAAGAC	1 cut(s)	287
Bbv12I	GWGCWC	1 cut(s)	334
BbvI	GCAGC	3 cut(s)	331, 390, 436
BceAI	ACGGC	2 cut(s)	459, 655
BcgI	CGANNNNNNTGC	2 cut(s)	326, 360
BclI	TGATCA	1 cut(s)	37
BcnI	CCSGG	4 cut(s)	212, 244, 481, 579
BcoDI	GTCTC	2 cut(s)	90, 194
BcuI	ACTAGT	1 cut(s)	422
BfaI	CTAG	1 cut(s)	423
BfmI	CTRYAG	1 cut(s)	312
Bme1390I	CCNGG	4 cut(s)	212, 244, 481, 579
BmeT110I	CYCGRG	1 cut(s)	296
BmgBI	CACGTC	2 cut(s)	340, 670
BmiI	GGNNCC	3 cut(s)	209, 411, 537
BmrFI	CCNGG	4 cut(s)	212, 244, 481, 579
BmsI	GCATC	2 cut(s)	564, 597
BpiI	GAAGAC	1 cut(s)	287
Bpu10I	CCTNAGC	2 cut(s)	429, 453
BpuEI	CTTGAG	1 cut(s)	376
BpuMI	CCSGG	4 cut(s)	212, 244, 481, 579
BsaJI	CCNNGG	4 cut(s)	220, 462, 480, 578
BsaWI	WCCGGW	2 cut(s)	73, 538
BsaXI	ACNNNNNCTCC	2 cut(s)	551, 581
Bsc4I	CCNNNNNNNGG	2 cut(s)	249, 360
Bse118I	RCCGGY	3 cut(s)	406, 412, 538
BseAI	TCCGGA	1 cut(s)	73
BseDI	CCNNGG	4 cut(s)	220, 462, 480, 578
BseGI	GGATG	5 cut(s)	10, 129, 568, 579, 612
BseLI	CCNNNNNNNGG	2 cut(s)	249, 360
BseMII	CTCAG	2 cut(s)	62, 467
BseRI	GAGGAG	4 cut(s)	155, 247, 572, 612
BseX3I	CGGCCG	2 cut(s)	459, 473
BseXI	GCAGC	3 cut(s)	331, 390, 436
Bsh1236I	CGCG	4 cut(s)	222, 328, 386, 515
Bsh1285I	CGRYCG	4 cut(s)	462, 476, 480, 513
BshFI	GGCC	2 cut(s)	461, 475
BshNI	GGYRCC	2 cut(s)	207, 409
BshTI	ACCGGT	1 cut(s)	538
BsiEI	CGRYCG	4 cut(s)	462, 476, 480, 513
BsiHKAI	GWGCWC	1 cut(s)	334
BsiHKCI	CYCGRG	1 cut(s)	296
BsiSI	CCGG	8 cut(s)	74, 212, 243, 407, 413, 480, 539, 578
BslFI	GGGAC	1 cut(s)	313
BslI	CCNNNNNNNGG	2 cut(s)	249, 360
BsmAI	GTCTC	2 cut(s)	90, 194
BsmBI	CGTCTC	2 cut(s)	90, 194
BsmFI	GGGAC	1 cut(s)	313
BsnI	GGCC	2 cut(s)	461, 475
BsoBI	CYCGRG	1 cut(s)	296
Bsp1286I	GDGCHC	2 cut(s)	273, 334
Bsp13I	TCCGGA	1 cut(s)	73
Bsp143I	GATC	2 cut(s)	37, 506
BspANI	GGCC	2 cut(s)	461, 475
BspCNI	CTCAG	2 cut(s)	61, 466
BspEI	TCCGGA	1 cut(s)	73
BspFNI	CGCG	4 cut(s)	222, 328, 386, 515
BspLI	GGNNCC	3 cut(s)	209, 411, 537
BspMAI	CTGCAG	1 cut(s)	316
BspPI	GGATC	1 cut(s)	514
BspT107I	GGYRCC	2 cut(s)	207, 409
BsrFI	RCCGGY	3 cut(s)	406, 412, 538
BssAI	RCCGGY	3 cut(s)	406, 412, 538
BssECI	CCNNGG	4 cut(s)	220, 462, 480, 578
BssMI	GATC	2 cut(s)	37, 506
Bst4CI	ACNGT	3 cut(s)	615, 659, 678
Bst6I	CTCTTC	1 cut(s)	167
BstC8I	GCNNGC	5 cut(s)	153, 330, 373, 414, 588
BstDEI	CTNAG	3 cut(s)	48, 429, 453
BstDSI	CCRYGG	1 cut(s)	220
BstF5I	GGATG	5 cut(s)	10, 129, 568, 579, 612
BstFNI	CGCG	4 cut(s)	222, 328, 386, 515
BstHHI	GCGC	1 cut(s)	328
BstKTI	GATC	2 cut(s)	40, 509
BstMAI	GTCTC	2 cut(s)	90, 194
BstMBI	GATC	2 cut(s)	37, 506
BstMCI	CGRYCG	4 cut(s)	462, 476, 480, 513
BstSCI	CCNGG	4 cut(s)	210, 242, 479, 577
BstSFI	CTRYAG	1 cut(s)	312
BstUI	CGCG	4 cut(s)	222, 328, 386, 515
BstV1I	GCAGC	3 cut(s)	331, 390, 436
BstV2I	GAAGAC	1 cut(s)	287
BstZI	CGGCCG	2 cut(s)	459, 473
BsuRI	GGCC	2 cut(s)	461, 475
BtgI	CCRYGG	1 cut(s)	220
BtgZI	GCGATG	1 cut(s)	660
BtrI	CACGTC	2 cut(s)	340, 670
BtsCI	GGATG	5 cut(s)	10, 129, 568, 579, 612
BtsI	GCAGTG	1 cut(s)	309
BtsIMutI	CAGTG	2 cut(s)	309, 674
Cac8I	GCNNGC	5 cut(s)	153, 330, 373, 414, 588
CfoI	GCGC	1 cut(s)	328
Cfr10I	RCCGGY	3 cut(s)	406, 412, 538
Cfr42I	CCGCGG	1 cut(s)	223
Csp6I	GTAC	3 cut(s)	52, 163, 217
CspAI	ACCGGT	1 cut(s)	538
CviAII	CATG	3 cut(s)	148, 595, 652
CviQI	GTAC	3 cut(s)	52, 163, 217
DdeI	CTNAG	3 cut(s)	48, 429, 453
DpnI	GATC	2 cut(s)	39, 508
DpnII	GATC	2 cut(s)	37, 506
DraIII	CACNNNGTG	2 cut(s)	214, 340
DrdI	GACNNNNNNGTC	1 cut(s)	143
DseDI	GACNNNNNNGTC	1 cut(s)	143
EaeI	YGGCCR	2 cut(s)	459, 473
EagI	CGGCCG	2 cut(s)	459, 473
Eam1104I	CTCTTC	1 cut(s)	167
EarI	CTCTTC	1 cut(s)	167
EciI	GGCGGA	2 cut(s)	536, 614
EclXI	CGGCCG	2 cut(s)	459, 473
Eco24I	GRGCYC	1 cut(s)	273
Eco52I	CGGCCG	2 cut(s)	459, 473
Eco88I	CYCGRG	1 cut(s)	296
EcoT38I	GRGCYC	1 cut(s)	273
Esp3I	CGTCTC	2 cut(s)	90, 194
FaeI	CATG	3 cut(s)	151, 598, 655
FaqI	GGGAC	1 cut(s)	313
FatI	CATG	3 cut(s)	147, 594, 651
FauI	CCCGC	1 cut(s)	172
FbaI	TGATCA	1 cut(s)	37
FokI	GGATG	5 cut(s)	17, 136, 575, 586, 619
FriOI	GRGCYC	1 cut(s)	273
FspBI	CTAG	1 cut(s)	423
GlaI	GCGC	1 cut(s)	327
HaeIII	GGCC	2 cut(s)	461, 475
HapII	CCGG	8 cut(s)	74, 212, 243, 407, 413, 480, 539, 578
HhaI	GCGC	1 cut(s)	328
Hin1II	CATG	3 cut(s)	151, 598, 655
Hin6I	GCGC	1 cut(s)	326
HinP1I	GCGC	1 cut(s)	326
HinfI	GANTC	5 cut(s)	77, 288, 389, 488, 530
HpaII	CCGG	8 cut(s)	74, 212, 243, 407, 413, 480, 539, 578
HphI	GGTGA	1 cut(s)	609
Hpy166II	GTNNAC	1 cut(s)	217
Hpy188I	TCNGA	5 cut(s)	67, 94, 136, 493, 535
Hpy188III	TCNNGA	5 cut(s)	74, 266, 298, 335, 504
Hpy8I	GTNNAC	1 cut(s)	217
Hpy99I	CGWCG	2 cut(s)	163, 341
HpyAV	CCTTC	2 cut(s)	177, 596
HpyCH4III	ACNGT	3 cut(s)	615, 659, 678
HpyCH4IV	ACGT	3 cut(s)	161, 339, 669
HpyCH4V	TGCA	1 cut(s)	314
HpyF3I	CTNAG	3 cut(s)	48, 429, 453
HpySE526I	ACGT	3 cut(s)	161, 339, 669
Hsp92II	CATG	3 cut(s)	151, 598, 655
HspAI	GCGC	1 cut(s)	326
Kpn2I	TCCGGA	1 cut(s)	73
KroI	GCCGGC	1 cut(s)	412
KroNI	GCCGGC	1 cut(s)	414
Ksp22I	TGATCA	1 cut(s)	37
KspI	CCGCGG	1 cut(s)	223
Kzo9I	GATC	2 cut(s)	37, 506
Lsp1109I	GCAGC	3 cut(s)	331, 390, 436
LweI	GCATC	2 cut(s)	564, 597
MaeI	CTAG	1 cut(s)	423
MaeII	ACGT	3 cut(s)	161, 339, 669
MaeIII	GTNAC	3 cut(s)	615, 672, 683
MalI	GATC	2 cut(s)	39, 508
MboI	GATC	2 cut(s)	37, 506
MboII	GAAGA	4 cut(s)	181, 184, 199, 292
MhlI	GDGCHC	2 cut(s)	273, 334
MluCI	AATT	1 cut(s)	379
MlyI	GAGTC	1 cut(s)	383
MmeI	TCCRAC	1 cut(s)	114
MroI	TCCGGA	1 cut(s)	73
MroNI	GCCGGC	1 cut(s)	412
MroXI	GAANNNNTTC	1 cut(s)	191
MslI	CAYNNNNRTG	1 cut(s)	630
MspA1I	CMGCKG	2 cut(s)	105, 222
MspI	CCGG	8 cut(s)	74, 212, 243, 407, 413, 480, 539, 578
MspR9I	CCNGG	4 cut(s)	212, 244, 481, 579
MvnI	CGCG	4 cut(s)	222, 328, 386, 515
NaeI	GCCGGC	1 cut(s)	414
NciI	CCSGG	4 cut(s)	212, 244, 481, 579
NdeII	GATC	2 cut(s)	37, 506
NgoMIV	GCCGGC	1 cut(s)	412
NlaIII	CATG	3 cut(s)	151, 598, 655
NlaIV	GGNNCC	3 cut(s)	209, 411, 537
NmeAIII	GCCGAG	2 cut(s)	371, 487
NmuCI	GTSAC	2 cut(s)	615, 672
PdiI	GCCGGC	1 cut(s)	414
PdmI	GAANNNNTTC	1 cut(s)	191
PfeI	GAWTC	4 cut(s)	77, 288, 488, 530
PfoI	TCCNGGA	1 cut(s)	242
PinAI	ACCGGT	1 cut(s)	538
PleI	GAGTC	1 cut(s)	383
PpsI	GAGTC	1 cut(s)	383
PsiI	TTATAA	1 cut(s)	630
PspN4I	GGNNCC	3 cut(s)	209, 411, 537
PstI	CTGCAG	1 cut(s)	316
RsaI	GTAC	3 cut(s)	53, 164, 218
RsaNI	GTAC	3 cut(s)	52, 163, 217
RseI	CAYNNNNRTG	1 cut(s)	630
SacII	CCGCGG	1 cut(s)	223
Sau3AI	GATC	2 cut(s)	37, 506
SchI	GAGTC	1 cut(s)	383
ScrFI	CCNGG	4 cut(s)	212, 244, 481, 579
SduI	GDGCHC	2 cut(s)	273, 334
SetI	ASST	8 cut(s)	22, 147, 164, 264, 342, 498, 622, 672
SfaNI	GCATC	2 cut(s)	564, 597
SfcI	CTRYAG	1 cut(s)	312
Sfr303I	CCGCGG	1 cut(s)	223
SgrBI	CCGCGG	1 cut(s)	223
SmiMI	CAYNNNNRTG	1 cut(s)	630
SmlI	CTYRAG	1 cut(s)	355
SmoI	CTYRAG	1 cut(s)	355
SpeI	ACTAGT	1 cut(s)	422
Sse9I	AATT	1 cut(s)	379
SspMI	CTAG	1 cut(s)	423
StyD4I	CCNGG	4 cut(s)	210, 242, 479, 577
TaaI	ACNGT	3 cut(s)	615, 659, 678
TaiI	ACGT	3 cut(s)	164, 342, 672
TaqII	GACCGA	1 cut(s)	499
TasI	AATT	1 cut(s)	379
TauI	GCSGC	9 cut(s)	158, 225, 326, 403, 449, 461, 518, 521, 645
TfiI	GAWTC	4 cut(s)	77, 288, 488, 530
TscAI	CASTG	2 cut(s)	316, 681
TseFI	GTSAC	2 cut(s)	615, 672
TseI	GCWGC	3 cut(s)	344, 403, 449
Tsp45I	GTSAC	2 cut(s)	615, 672
TspDTI	ATGAA	1 cut(s)	140
TspRI	CASTG	2 cut(s)	316, 681
XapI	RAATTY	1 cut(s)	379
XcmI	CCANNNNNNNNNTGG	1 cut(s)	316
XmnI	GAANNNNTTC	1 cut(s)	191
XspI	CTAG	1 cut(s)	423

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.