Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0010680

Physical Location & Seq

Genomic Coordinates Reverse (-)

29427231 .. 29427893

Gene Structure 663 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1196100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGGATGCTTTCTCTCATTACTACGTGGACCCGCAGCCGGAATCGTCGTCCGCTTCTGACGCCAACAGTTCTCGCCCCATGTTCATGAACTTGTCGGACGAGGAGGTCCTGCTGGCGTCCACTTACCCGAAGAAGCAGGCTGGACGGAAGAAGTTTAAAGAGACAAGGCACCCTGTGTACCGCGGTGTCCGGAGGAGGAACTCCGGCAAGTGGGTGTCCGAGGTCCGGGAGCCCAACAAAAAGACAAGGATTTGGCTGGGAACATTTCCCACAGCCGAAATGGCCGCGCGCGCTCATGATGTGGCGGCCATTGCGCTGAGGGGGAGGTCGGCTTGCCTCAACTTTGCCGACTCTGCGTGGCGGCTACCAGTCCCGGCCTCCGCCAACGCGAAGGATATTCAAACTGCCGCGGCGGAAGCAGCAGAACAGTTTCGGCCGGTGGAAGAGTCGGATGAGGCTTGTGGTGCTTCTGCGGTGGCTCCCTCGGAGTGCACGTCAGCGCCGGAGCAACAAGTGCATTTTATGGATGAGGAAGCGGTTTTTGGGATGCCGGGACTGCTGGCAAATATGGCGGAAGGAATGCTACTGCCTCCACCTCATTACAATGCCGATGATGTCGTGGATGTTTATGCGGACGTGCCATTATGGAGTTTTTCCATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009631 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010035 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042221 GO:0043436 GO:0043565 GO:0044237 GO:0044281 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

221

Amino Acids

24.18

Weight (kDa)

5.29

Isoelectric Point (pI)

64.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	58 - 108	1.3e-15	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010680)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25470 AT4G25480 AT4G25490 AT5G51990
fragaria_vesca	FvH4_7g28950
malus_domestica	MD01G1196100.v1.1 MD07G1262900.v1.1
prunus_persica	Prupe.2G289500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0376641
rosa_laevigata	RLG00000026586
rosa_multiflora	Rmu_sc0005594.1_g000005 Rmu_sc0009616.1_g000001
rosa_roxburghii	Rroxscaffold_4G00281920 Rroxscaffold_4G00308350
rosa_rugosa	Rorug01G0397000
rosa_samantha	Rh1AG413900 Rh1BG373300 Rh1CG387200 Rh1DG404300
rosa_wichuraiana	Rw1G036310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	104
AccB1I	GGYRCC	1 cut(s)	168
AccII	CGCG	6 cut(s)	183, 287, 289, 291, 389, 410
AccIII	TCCGGA	1 cut(s)	189
AcoI	YGGCCR	3 cut(s)	282, 306, 434
AcyI	GRCGYC	2 cut(s)	60, 116
AdeI	CACNNNGTG	1 cut(s)	175
AfaI	GTAC	1 cut(s)	179
AfiI	CCNNNNNNNGG	3 cut(s)	37, 210, 225
AgsI	TTSAA	1 cut(s)	401
AjiI	CACGTC	2 cut(s)	495, 637
AjuI	GAANNNNNNNTTGG	2 cut(s)	525, 557
Alw21I	GWGCWC	1 cut(s)	494
Alw26I	GTCTC	1 cut(s)	155
Alw44I	GTGCAC	1 cut(s)	490
Aor13HI	TCCGGA	1 cut(s)	189
AoxI	GGCC	4 cut(s)	282, 306, 375, 434
ApaLI	GTGCAC	1 cut(s)	490
ApeKI	GCWGC	2 cut(s)	34, 419
Asp700I	GAANNNNTTC	1 cut(s)	429
AspLEI	GCGC	5 cut(s)	289, 291, 293, 316, 502
AspS9I	GGNCC	3 cut(s)	28, 106, 223
AsuC2I	CCSGG	3 cut(s)	227, 374, 552
AvaII	GGWCC	3 cut(s)	28, 106, 223
BaeGI	GKGCMC	1 cut(s)	494
BanI	GGYRCC	1 cut(s)	168
BanII	GRGCYC	1 cut(s)	234
BarI	GAAGNNNNNNTAC	2 cut(s)	567, 599
Bbv12I	GWGCWC	1 cut(s)	494
BbvCI	CCTCAGC	1 cut(s)	317
BbvI	GCAGC	2 cut(s)	46, 431
BcnI	CCSGG	3 cut(s)	227, 374, 552
BcoDI	GTCTC	1 cut(s)	155
BfoI	RGCGCY	1 cut(s)	503
BglI	GCCNNNNNGGC	1 cut(s)	281
BisI	GCNGC	7 cut(s)	35, 285, 306, 362, 408, 411, 420
BlsI	GCNGC	7 cut(s)	36, 286, 307, 363, 409, 412, 421
Bme1390I	CCNGG	3 cut(s)	227, 374, 552
Bme18I	GGWCC	3 cut(s)	28, 106, 223
BmgBI	CACGTC	2 cut(s)	495, 637
BmgT120I	GGNCC	3 cut(s)	28, 106, 223
BmiI	GGNNCC	4 cut(s)	30, 170, 231, 480
BmrFI	CCNGG	3 cut(s)	227, 374, 552
BmsI	GCATC	1 cut(s)	537
Bpu10I	CCTNAGC	1 cut(s)	317
BpuMI	CCSGG	3 cut(s)	227, 374, 552
BsaAI	YACGTR	1 cut(s)	25
BsaHI	GRCGYC	2 cut(s)	60, 116
BsaJI	CCNNGG	4 cut(s)	181, 219, 408, 483
BsaWI	WCCGGW	1 cut(s)	189
BsaXI	ACNNNNNCTCC	2 cut(s)	479, 509
Bsc4I	CCNNNNNNNGG	3 cut(s)	37, 210, 225
Bse118I	RCCGGY	1 cut(s)	436
Bse1I	ACTGG	1 cut(s)	368
Bse3DI	GCAATG	1 cut(s)	309
BseAI	TCCGGA	1 cut(s)	189
BseDI	CCNNGG	4 cut(s)	181, 219, 408, 483
BseGI	GGATG	5 cut(s)	10, 457, 532, 552, 628
BseLI	CCNNNNNNNGG	3 cut(s)	37, 210, 225
BseMI	GCAATG	1 cut(s)	309
BseMII	CTCAG	1 cut(s)	308
BseNI	ACTGG	1 cut(s)	368
BsePI	GCGCGC	2 cut(s)	287, 289
BseRI	GAGGAG	2 cut(s)	116, 208
BseSI	GKGCMC	1 cut(s)	494
BseX3I	CGGCCG	1 cut(s)	434
BseXI	GCAGC	2 cut(s)	46, 431
BseYI	CCCAGC	1 cut(s)	256
Bsh1236I	CGCG	6 cut(s)	183, 287, 289, 291, 389, 410
Bsh1285I	CGRYCG	1 cut(s)	437
BshFI	GGCC	4 cut(s)	284, 308, 377, 436
BshNI	GGYRCC	1 cut(s)	168
BsiEI	CGRYCG	1 cut(s)	437
BsiHKAI	GWGCWC	1 cut(s)	494
BsiSI	CCGG	8 cut(s)	38, 190, 204, 226, 374, 437, 503, 551
BslFI	GGGAC	2 cut(s)	356, 567
BslI	CCNNNNNNNGG	3 cut(s)	37, 210, 225
BsmAI	GTCTC	1 cut(s)	155
BsmFI	GGGAC	2 cut(s)	356, 567
BsmI	GAATGC	1 cut(s)	585
BsnI	GGCC	4 cut(s)	284, 308, 377, 436
Bsp1286I	GDGCHC	2 cut(s)	234, 494
Bsp13I	TCCGGA	1 cut(s)	189
BspANI	GGCC	4 cut(s)	284, 308, 377, 436
BspCNI	CTCAG	1 cut(s)	309
BspEI	TCCGGA	1 cut(s)	189
BspFNI	CGCG	6 cut(s)	183, 287, 289, 291, 389, 410
BspHI	TCATGA	2 cut(s)	84, 295
BspLI	GGNNCC	4 cut(s)	30, 170, 231, 480
BspT107I	GGYRCC	1 cut(s)	168
BsrDI	GCAATG	1 cut(s)	309
BsrFI	RCCGGY	1 cut(s)	436
BsrI	ACTGG	1 cut(s)	368
BssAI	RCCGGY	1 cut(s)	436
BssECI	CCNNGG	4 cut(s)	181, 219, 408, 483
BssHII	GCGCGC	2 cut(s)	287, 289
BssNI	GRCGYC	2 cut(s)	60, 116
Bst4CI	ACNGT	2 cut(s)	68, 429
Bst6I	CTCTTC	1 cut(s)	438
BstACI	GRCGYC	2 cut(s)	60, 116
BstAPI	GCANNNNNTGC	1 cut(s)	514
BstBAI	YACGTR	1 cut(s)	25
BstC8I	GCNNGC	6 cut(s)	114, 138, 289, 291, 334, 561
BstDEI	CTNAG	1 cut(s)	317
BstDSI	CCRYGG	2 cut(s)	181, 408
BstF5I	GGATG	5 cut(s)	10, 457, 532, 552, 628
BstFNI	CGCG	6 cut(s)	183, 287, 289, 291, 389, 410
BstH2I	RGCGCY	1 cut(s)	503
BstHHI	GCGC	5 cut(s)	289, 291, 293, 316, 502
BstMAI	GTCTC	1 cut(s)	155
BstMCI	CGRYCG	1 cut(s)	437
BstSCI	CCNGG	3 cut(s)	225, 372, 550
BstSLI	GKGCMC	1 cut(s)	494
BstUI	CGCG	6 cut(s)	183, 287, 289, 291, 389, 410
BstV1I	GCAGC	2 cut(s)	46, 431
BstZI	CGGCCG	1 cut(s)	434
BsuRI	GGCC	4 cut(s)	284, 308, 377, 436
BtgI	CCRYGG	2 cut(s)	181, 408
BtrI	CACGTC	2 cut(s)	495, 637
BtsCI	GGATG	5 cut(s)	10, 457, 532, 552, 628
Cac8I	GCNNGC	6 cut(s)	114, 138, 289, 291, 334, 561
CciI	TCATGA	2 cut(s)	84, 295
CfoI	GCGC	5 cut(s)	289, 291, 293, 316, 502
Cfr10I	RCCGGY	1 cut(s)	436
Cfr13I	GGNCC	3 cut(s)	28, 106, 223
Cfr42I	CCGCGG	2 cut(s)	184, 411
CseI	GACGC	2 cut(s)	68, 105
Csp6I	GTAC	1 cut(s)	178
CviAII	CATG	3 cut(s)	79, 85, 296
CviQI	GTAC	1 cut(s)	178
DdeI	CTNAG	1 cut(s)	317
DraI	TTTAAA	1 cut(s)	157
DraIII	CACNNNGTG	1 cut(s)	175
DrdI	GACNNNNNNGTC	1 cut(s)	104
DseDI	GACNNNNNNGTC	1 cut(s)	104
EaeI	YGGCCR	3 cut(s)	282, 306, 434
EagI	CGGCCG	1 cut(s)	434
Eam1104I	CTCTTC	1 cut(s)	438
EarI	CTCTTC	1 cut(s)	438
EciI	GGCGGA	3 cut(s)	370, 428, 587
EclXI	CGGCCG	1 cut(s)	434
Eco24I	GRGCYC	1 cut(s)	234
Eco47I	GGWCC	3 cut(s)	28, 106, 223
Eco52I	CGGCCG	1 cut(s)	434
EcoO109I	RGGNCCY	1 cut(s)	106
EcoT38I	GRGCYC	1 cut(s)	234
FaeI	CATG	3 cut(s)	82, 88, 299
FaiI	YATR	7 cut(s)	80, 86, 297, 524, 569, 630, 646
FaqI	GGGAC	2 cut(s)	356, 567
FatI	CATG	3 cut(s)	78, 84, 295
FauI	CCCGC	1 cut(s)	39
Fnu4HI	GCNGC	7 cut(s)	35, 285, 306, 362, 408, 411, 420
FokI	GGATG	5 cut(s)	17, 464, 539, 559, 635
FriOI	GRGCYC	1 cut(s)	234
Fsp4HI	GCNGC	7 cut(s)	35, 285, 306, 362, 408, 411, 420
GlaI	GCGC	5 cut(s)	288, 290, 292, 315, 501
GluI	GCNGC	7 cut(s)	35, 285, 306, 362, 408, 411, 420
GsaI	CCCAGC	1 cut(s)	260
HaeII	RGCGCY	1 cut(s)	503
HaeIII	GGCC	4 cut(s)	284, 308, 377, 436
HapII	CCGG	8 cut(s)	38, 190, 204, 226, 374, 437, 503, 551
HgaI	GACGC	2 cut(s)	68, 105
HhaI	GCGC	5 cut(s)	289, 291, 293, 316, 502
Hin1I	GRCGYC	2 cut(s)	60, 116
Hin1II	CATG	3 cut(s)	82, 88, 299
Hin6I	GCGC	5 cut(s)	287, 289, 291, 314, 500
HinP1I	GCGC	5 cut(s)	287, 289, 291, 314, 500
HinfI	GANTC	3 cut(s)	41, 350, 446
HpaII	CCGG	8 cut(s)	38, 190, 204, 226, 374, 437, 503, 551
Hpy166II	GTNNAC	4 cut(s)	28, 120, 178, 492
Hpy188I	TCNGA	5 cut(s)	58, 97, 220, 451, 487
Hpy188III	TCNNGA	3 cut(s)	85, 190, 296
Hpy8I	GTNNAC	4 cut(s)	28, 120, 178, 492
Hpy99I	CGWCG	1 cut(s)	49
HpyAV	CCTTC	2 cut(s)	385, 569
HpyCH4III	ACNGT	2 cut(s)	68, 429
HpyCH4IV	ACGT	3 cut(s)	24, 494, 636
HpyCH4V	TGCA	2 cut(s)	492, 517
HpyF3I	CTNAG	1 cut(s)	317
HpySE526I	ACGT	3 cut(s)	24, 494, 636
Hsp92I	GRCGYC	2 cut(s)	60, 116
Hsp92II	CATG	3 cut(s)	82, 88, 299
HspAI	GCGC	5 cut(s)	287, 289, 291, 314, 500
Kpn2I	TCCGGA	1 cut(s)	189
KspI	CCGCGG	2 cut(s)	184, 411
LmnI	GCTCC	3 cut(s)	229, 484, 505
Lsp1109I	GCAGC	2 cut(s)	46, 431
LweI	GCATC	1 cut(s)	537
MaeII	ACGT	3 cut(s)	24, 494, 636
MauBI	CGCGCGCG	1 cut(s)	287
MboII	GAAGA	3 cut(s)	142, 160, 455
MhlI	GDGCHC	2 cut(s)	234, 494
MlyI	GAGTC	2 cut(s)	344, 455
MmeI	TCCRAC	2 cut(s)	75, 429
MroI	TCCGGA	1 cut(s)	189
MroXI	GAANNNNTTC	1 cut(s)	429
MseI	TTAA	1 cut(s)	156
MslI	CAYNNNNRTG	2 cut(s)	83, 603
MspA1I	CMGCKG	2 cut(s)	183, 410
MspI	CCGG	8 cut(s)	38, 190, 204, 226, 374, 437, 503, 551
MspR9I	CCNGG	3 cut(s)	227, 374, 552
Mva1269I	GAATGC	1 cut(s)	585
MvnI	CGCG	6 cut(s)	183, 287, 289, 291, 389, 410
NciI	CCSGG	3 cut(s)	227, 374, 552
NlaIII	CATG	3 cut(s)	82, 88, 299
NlaIV	GGNNCC	4 cut(s)	30, 170, 231, 480
PagI	TCATGA	2 cut(s)	84, 295
PauI	GCGCGC	2 cut(s)	287, 289
PcsI	WCGNNNNNNNCGW	1 cut(s)	491
PctI	GAATGC	1 cut(s)	585
PdmI	GAANNNNTTC	1 cut(s)	429
PfeI	GAWTC	1 cut(s)	41
PfoI	TCCNGGA	1 cut(s)	225
PkrI	GCNGC	7 cut(s)	36, 286, 307, 363, 409, 412, 421
PleI	GAGTC	2 cut(s)	344, 454
PpsI	GAGTC	2 cut(s)	344, 454
Ppu21I	YACGTR	1 cut(s)	25
PpuMI	RGGWCCY	1 cut(s)	106
Psp5II	RGGWCCY	1 cut(s)	106
PspFI	CCCAGC	1 cut(s)	256
PspN4I	GGNNCC	4 cut(s)	30, 170, 231, 480
PspPI	GGNCC	3 cut(s)	28, 106, 223
PspPPI	RGGWCCY	1 cut(s)	106
PteI	GCGCGC	2 cut(s)	287, 289
RsaI	GTAC	1 cut(s)	179
RsaNI	GTAC	1 cut(s)	178
RseI	CAYNNNNRTG	2 cut(s)	83, 603
SacII	CCGCGG	2 cut(s)	184, 411
SaqAI	TTAA	1 cut(s)	156
SatI	GCNGC	7 cut(s)	35, 285, 306, 362, 408, 411, 420
Sau96I	GGNCC	3 cut(s)	28, 106, 223
SchI	GAGTC	2 cut(s)	344, 455
ScrFI	CCNGG	3 cut(s)	227, 374, 552
SduI	GDGCHC	2 cut(s)	234, 494
SetI	ASST	7 cut(s)	27, 108, 225, 329, 497, 598, 639
SfaNI	GCATC	1 cut(s)	537
Sfr303I	CCGCGG	2 cut(s)	184, 411
SgrBI	CCGCGG	2 cut(s)	184, 411
SinI	GGWCC	3 cut(s)	28, 106, 223
SmiMI	CAYNNNNRTG	2 cut(s)	83, 603
StyD4I	CCNGG	3 cut(s)	225, 372, 550
TaaI	ACNGT	2 cut(s)	68, 429
TaiI	ACGT	3 cut(s)	27, 497, 639
TauI	GCSGC	5 cut(s)	287, 308, 364, 410, 413
TfiI	GAWTC	1 cut(s)	41
Tru1I	TTAA	1 cut(s)	156
Tru9I	TTAA	1 cut(s)	156
TseI	GCWGC	2 cut(s)	34, 419
TspDTI	ATGAA	2 cut(s)	73, 101
TspGWI	ACGGA	1 cut(s)	160
VneI	GTGCAC	1 cut(s)	490
VpaK11BI	GGWCC	3 cut(s)	28, 106, 223
XcmI	CCANNNNNNNNNTGG	1 cut(s)	277
XmnI	GAANNNNTTC	1 cut(s)	429

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.