Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0010680

Physical Location & Seq

Genomic Coordinates Reverse (-)

29879885 .. 29880756

Gene Structure 872 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00308350.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGGATGGTGGATTTTCAGCTTTCCCTCAGTACTATGATCATAACACGCAGTACCCATTTGGTTCTGATTTTCCGGAATCATCGTCTCATTCTGACAACAACAGCGGTAATGGCGTTGGTAGGATGAAGATGAACTTGTCGGACGAGGAGGTCATGCTGGCGGCGACGTACCCGAAGAGGAGGGCGGGAAGGAAGAAGTTCAAGGAGACGAGGCACCCGGTGTACCGCGGAGTAAGGAGGAGGAACTCCGGGAAGTGGGTTTGCGAGGTTCGTGAGCCGAATAAGAAGACGAGAATCTGGCTCGGGACTTTCCCCACTGCAGAAATGGCGGCGCGTGCTCACGACGTGGCGGCGATTTCCTTGAGGGGGCGGTCTGCGTGCTTGAATTTCGCGGACTCGGCGTGGCGGCTGCCGGTGCCGGCTTCTACTAGTGCTAAGGACATACAGACGGCGGCTGCTCAGGCGGCGGAGGCGTTCCGGCCGACCTGGGAGGAATCGGAGGTTGTTTCAGGATCGGTCGCGGCGGCGGAAGCGGAATCGGAACCGGTGTTTTATATGGACGAGGAGGATGTGTTTGGGATGCCGGGGTTGCTGGCAAACATGGCGGAAGGGATGCTACTGTCACCTCCTCATTATAATGACTACGGCGGCGATGACACGGAAGGTTATGCTGACGTGTCACTGTGGAGTTACTCCATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009631 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010035 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042221 GO:0043436 GO:0043565 GO:0044237 GO:0044281 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

233

Amino Acids

25.76

Weight (kDa)

5.31

Isoelectric Point (pI)

60.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	73 - 123	3.7e-16	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010680)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25470 AT4G25480 AT4G25490 AT5G51990
fragaria_vesca	FvH4_7g28950
malus_domestica	MD01G1196100.v1.1 MD07G1262900.v1.1
prunus_persica	Prupe.2G289500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0376641
rosa_laevigata	RLG00000026586
rosa_multiflora	Rmu_sc0005594.1_g000005 Rmu_sc0009616.1_g000001
rosa_roxburghii	Rroxscaffold_4G00281920 Rroxscaffold_4G00308350
rosa_rugosa	Rorug01G0397000
rosa_samantha	Rh1AG413900 Rh1BG373300 Rh1CG387200 Rh1DG404300
rosa_wichuraiana	Rw1G036310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	636
AasI	GACNNNNNNGTC	1 cut(s)	149
AccB1I	GGYRCC	2 cut(s)	213, 415
AccII	CGCG	4 cut(s)	228, 334, 392, 521
AccIII	TCCGGA	1 cut(s)	73
AclWI	GGATC	1 cut(s)	520
AcoI	YGGCCR	1 cut(s)	479
AcsI	RAATTY	1 cut(s)	385
AdeI	CACNNNGTG	2 cut(s)	220, 346
AfaI	GTAC	4 cut(s)	32, 53, 170, 224
AfiI	CCNNNNNNNGG	2 cut(s)	255, 366
AflIII	ACRYGT	1 cut(s)	675
AgeI	ACCGGT	1 cut(s)	544
AgsI	TTSAA	2 cut(s)	202, 385
AhlI	ACTAGT	1 cut(s)	428
AjiI	CACGTC	2 cut(s)	346, 676
AjnI	CCWGG	1 cut(s)	485
AluBI	AGCT	1 cut(s)	20
AluI	AGCT	1 cut(s)	20
Alw21I	GWGCWC	1 cut(s)	340
Alw26I	GTCTC	2 cut(s)	90, 200
AlwI	GGATC	1 cut(s)	520
Ama87I	CYCGRG	1 cut(s)	302
Aor13HI	TCCGGA	1 cut(s)	73
AoxI	GGCC	1 cut(s)	479
ApeKI	GCWGC	2 cut(s)	409, 455
ApoI	RAATTY	1 cut(s)	385
AsiGI	ACCGGT	1 cut(s)	544
Asp700I	GAANNNNTTC	1 cut(s)	197
AspLEI	GCGC	1 cut(s)	334
AsuC2I	CCSGG	3 cut(s)	218, 250, 585
AsuHPI	GGTGA	1 cut(s)	615
AvaI	CYCGRG	1 cut(s)	302
BanI	GGYRCC	2 cut(s)	213, 415
BarI	GAAGNNNNNNTAC	2 cut(s)	600, 632
BbsI	GAAGAC	1 cut(s)	293
Bbv12I	GWGCWC	1 cut(s)	340
BbvI	GCAGC	2 cut(s)	396, 442
BceAI	ACGGC	2 cut(s)	465, 661
BciT130I	CCWGG	1 cut(s)	487
BclI	TGATCA	1 cut(s)	37
BcnI	CCSGG	3 cut(s)	218, 250, 585
BcoDI	GTCTC	2 cut(s)	90, 200
BcuI	ACTAGT	1 cut(s)	428
BfaI	CTAG	1 cut(s)	429
BfmI	CTRYAG	1 cut(s)	318
BmcAI	AGTACT	1 cut(s)	32
Bme1390I	CCNGG	4 cut(s)	218, 250, 487, 585
BmeT110I	CYCGRG	1 cut(s)	302
BmgBI	CACGTC	2 cut(s)	346, 676
BmiI	GGNNCC	3 cut(s)	215, 417, 543
BmrFI	CCNGG	4 cut(s)	218, 250, 487, 585
BmsI	GCATC	2 cut(s)	570, 603
BpiI	GAAGAC	1 cut(s)	293
Bpu10I	CCTNAGC	2 cut(s)	435, 459
BpuEI	CTTGAG	1 cut(s)	382
BpuMI	CCSGG	3 cut(s)	218, 250, 585
BsaJI	CCNNGG	3 cut(s)	226, 486, 584
BsaWI	WCCGGW	2 cut(s)	73, 544
BsaXI	ACNNNNNCTCC	2 cut(s)	557, 587
Bsc4I	CCNNNNNNNGG	2 cut(s)	255, 366
Bse118I	RCCGGY	3 cut(s)	412, 418, 544
BseAI	TCCGGA	1 cut(s)	73
BseBI	CCWGG	1 cut(s)	487
BseDI	CCNNGG	3 cut(s)	226, 486, 584
BseGI	GGATG	5 cut(s)	10, 129, 574, 585, 618
BseLI	CCNNNNNNNGG	2 cut(s)	255, 366
BseMII	CTCAG	2 cut(s)	41, 473
BseRI	GAGGAG	5 cut(s)	161, 193, 253, 578, 618
BseX3I	CGGCCG	1 cut(s)	479
BseXI	GCAGC	2 cut(s)	396, 442
Bsh1236I	CGCG	4 cut(s)	228, 334, 392, 521
Bsh1285I	CGRYCG	2 cut(s)	482, 519
BshFI	GGCC	1 cut(s)	481
BshNI	GGYRCC	2 cut(s)	213, 415
BshTI	ACCGGT	1 cut(s)	544
BsiEI	CGRYCG	2 cut(s)	482, 519
BsiHKAI	GWGCWC	1 cut(s)	340
BsiHKCI	CYCGRG	1 cut(s)	302
BsiSI	CCGG	8 cut(s)	74, 218, 249, 413, 419, 478, 545, 584
BslFI	GGGAC	1 cut(s)	319
BslI	CCNNNNNNNGG	2 cut(s)	255, 366
BsmAI	GTCTC	2 cut(s)	90, 200
BsmBI	CGTCTC	2 cut(s)	90, 200
BsmFI	GGGAC	1 cut(s)	319
BsnI	GGCC	1 cut(s)	481
BsoBI	CYCGRG	1 cut(s)	302
Bsp1286I	GDGCHC	1 cut(s)	340
Bsp13I	TCCGGA	1 cut(s)	73
Bsp143I	GATC	2 cut(s)	37, 512
BspANI	GGCC	1 cut(s)	481
BspCNI	CTCAG	2 cut(s)	40, 472
BspEI	TCCGGA	1 cut(s)	73
BspFNI	CGCG	4 cut(s)	228, 334, 392, 521
BspLI	GGNNCC	3 cut(s)	215, 417, 543
BspMAI	CTGCAG	1 cut(s)	322
BspPI	GGATC	1 cut(s)	520
BspT107I	GGYRCC	2 cut(s)	213, 415
BsrFI	RCCGGY	3 cut(s)	412, 418, 544
BssAI	RCCGGY	3 cut(s)	412, 418, 544
BssECI	CCNNGG	3 cut(s)	226, 486, 584
BssMI	GATC	2 cut(s)	37, 512
Bst2UI	CCWGG	1 cut(s)	487
Bst4CI	ACNGT	2 cut(s)	621, 684
Bst6I	CTCTTC	1 cut(s)	170
BstC8I	GCNNGC	5 cut(s)	159, 336, 379, 420, 594
BstDEI	CTNAG	3 cut(s)	27, 435, 459
BstDSI	CCRYGG	1 cut(s)	226
BstF5I	GGATG	5 cut(s)	10, 129, 574, 585, 618
BstFNI	CGCG	4 cut(s)	228, 334, 392, 521
BstHHI	GCGC	1 cut(s)	334
BstKTI	GATC	2 cut(s)	40, 515
BstMAI	GTCTC	2 cut(s)	90, 200
BstMBI	GATC	2 cut(s)	37, 512
BstMCI	CGRYCG	2 cut(s)	482, 519
BstNI	CCWGG	1 cut(s)	487
BstSCI	CCNGG	4 cut(s)	216, 248, 485, 583
BstSFI	CTRYAG	1 cut(s)	318
BstUI	CGCG	4 cut(s)	228, 334, 392, 521
BstV1I	GCAGC	2 cut(s)	396, 442
BstV2I	GAAGAC	1 cut(s)	293
BstZI	CGGCCG	1 cut(s)	479
BsuRI	GGCC	1 cut(s)	481
BtgI	CCRYGG	1 cut(s)	226
BtgZI	GCGATG	1 cut(s)	666
BtrI	CACGTC	2 cut(s)	346, 676
BtsCI	GGATG	5 cut(s)	10, 129, 574, 585, 618
BtsI	GCAGTG	1 cut(s)	315
BtsIMutI	CAGTG	2 cut(s)	315, 680
Cac8I	GCNNGC	5 cut(s)	159, 336, 379, 420, 594
CfoI	GCGC	1 cut(s)	334
Cfr10I	RCCGGY	3 cut(s)	412, 418, 544
Cfr42I	CCGCGG	1 cut(s)	229
Csp6I	GTAC	4 cut(s)	31, 52, 169, 223
CspAI	ACCGGT	1 cut(s)	544
CviAII	CATG	2 cut(s)	154, 601
CviJI	RGCY	7 cut(s)	20, 277, 301, 409, 422, 455, 481
CviKI_1	RGCY	7 cut(s)	20, 277, 301, 409, 422, 455, 481
CviQI	GTAC	4 cut(s)	31, 52, 169, 223
DdeI	CTNAG	3 cut(s)	27, 435, 459
DpnI	GATC	2 cut(s)	39, 514
DpnII	GATC	2 cut(s)	37, 512
DraIII	CACNNNGTG	2 cut(s)	220, 346
DrdI	GACNNNNNNGTC	1 cut(s)	149
DseDI	GACNNNNNNGTC	1 cut(s)	149
EaeI	YGGCCR	1 cut(s)	479
EagI	CGGCCG	1 cut(s)	479
Eam1104I	CTCTTC	1 cut(s)	170
EarI	CTCTTC	1 cut(s)	170
EciI	GGCGGA	3 cut(s)	482, 542, 620
EclXI	CGGCCG	1 cut(s)	479
Eco52I	CGGCCG	1 cut(s)	479
Eco88I	CYCGRG	1 cut(s)	302
EcoRII	CCWGG	1 cut(s)	485
Esp3I	CGTCTC	2 cut(s)	90, 200
FaeI	CATG	2 cut(s)	157, 604
FaiI	YATR	9 cut(s)	36, 42, 155, 443, 555, 557, 602, 636, 669
FalI	AAGNNNNNCTT	2 cut(s)	119, 151
FaqI	GGGAC	1 cut(s)	319
FatI	CATG	2 cut(s)	153, 600
FauI	CCCGC	1 cut(s)	178
FbaI	TGATCA	1 cut(s)	37
FokI	GGATG	5 cut(s)	17, 136, 581, 592, 625
FspBI	CTAG	1 cut(s)	429
GlaI	GCGC	1 cut(s)	333
HaeIII	GGCC	1 cut(s)	481
HapII	CCGG	8 cut(s)	74, 218, 249, 413, 419, 478, 545, 584
HhaI	GCGC	1 cut(s)	334
Hin1II	CATG	2 cut(s)	157, 604
Hin6I	GCGC	1 cut(s)	332
HinP1I	GCGC	1 cut(s)	332
HinfI	GANTC	5 cut(s)	77, 294, 395, 494, 536
HpaII	CCGG	8 cut(s)	74, 218, 249, 413, 419, 478, 545, 584
HphI	GGTGA	1 cut(s)	615
Hpy166II	GTNNAC	1 cut(s)	223
Hpy188I	TCNGA	5 cut(s)	67, 94, 142, 499, 541
Hpy188III	TCNNGA	5 cut(s)	74, 272, 304, 341, 510
Hpy8I	GTNNAC	1 cut(s)	223
Hpy99I	CGWCG	2 cut(s)	169, 347
HpyAV	CCTTC	3 cut(s)	183, 602, 656
HpyCH4III	ACNGT	2 cut(s)	621, 684
HpyCH4IV	ACGT	3 cut(s)	167, 345, 675
HpyCH4V	TGCA	1 cut(s)	320
HpyF3I	CTNAG	3 cut(s)	27, 435, 459
HpySE526I	ACGT	3 cut(s)	167, 345, 675
Hsp92II	CATG	2 cut(s)	157, 604
HspAI	GCGC	1 cut(s)	332
Kpn2I	TCCGGA	1 cut(s)	73
KroI	GCCGGC	1 cut(s)	418
KroNI	GCCGGC	1 cut(s)	420
Ksp22I	TGATCA	1 cut(s)	37
KspI	CCGCGG	1 cut(s)	229
Kzo9I	GATC	2 cut(s)	37, 512
Lsp1109I	GCAGC	2 cut(s)	396, 442
LweI	GCATC	2 cut(s)	570, 603
MaeI	CTAG	1 cut(s)	429
MaeII	ACGT	3 cut(s)	167, 345, 675
MaeIII	GTNAC	3 cut(s)	621, 678, 689
MalI	GATC	2 cut(s)	39, 514
MboI	GATC	2 cut(s)	37, 512
MboII	GAAGA	4 cut(s)	139, 187, 205, 298
MhlI	GDGCHC	1 cut(s)	340
MluCI	AATT	1 cut(s)	385
MlyI	GAGTC	1 cut(s)	389
MmeI	TCCRAC	1 cut(s)	120
MroI	TCCGGA	1 cut(s)	73
MroNI	GCCGGC	1 cut(s)	418
MroXI	GAANNNNTTC	1 cut(s)	197
MslI	CAYNNNNRTG	1 cut(s)	636
MspA1I	CMGCKG	2 cut(s)	105, 228
MspI	CCGG	8 cut(s)	74, 218, 249, 413, 419, 478, 545, 584
MspR9I	CCNGG	4 cut(s)	218, 250, 487, 585
MvaI	CCWGG	1 cut(s)	487
MvnI	CGCG	4 cut(s)	228, 334, 392, 521
NaeI	GCCGGC	1 cut(s)	420
NciI	CCSGG	3 cut(s)	218, 250, 585
NdeII	GATC	2 cut(s)	37, 512
NgoMIV	GCCGGC	1 cut(s)	418
NlaIII	CATG	2 cut(s)	157, 604
NlaIV	GGNNCC	3 cut(s)	215, 417, 543
NmeAIII	GCCGAG	1 cut(s)	377
NmuCI	GTSAC	2 cut(s)	621, 678
PdiI	GCCGGC	1 cut(s)	420
PdmI	GAANNNNTTC	1 cut(s)	197
PfeI	GAWTC	4 cut(s)	77, 294, 494, 536
PfoI	TCCNGGA	1 cut(s)	248
PinAI	ACCGGT	1 cut(s)	544
PleI	GAGTC	1 cut(s)	389
PpsI	GAGTC	1 cut(s)	389
PsiI	TTATAA	1 cut(s)	636
Psp6I	CCWGG	1 cut(s)	485
PspGI	CCWGG	1 cut(s)	485
PspN4I	GGNNCC	3 cut(s)	215, 417, 543
PstI	CTGCAG	1 cut(s)	322
RsaI	GTAC	4 cut(s)	32, 53, 170, 224
RsaNI	GTAC	4 cut(s)	31, 52, 169, 223
RseI	CAYNNNNRTG	1 cut(s)	636
SacII	CCGCGG	1 cut(s)	229
Sau3AI	GATC	2 cut(s)	37, 512
ScaI	AGTACT	1 cut(s)	32
SchI	GAGTC	1 cut(s)	389
ScrFI	CCNGG	4 cut(s)	218, 250, 487, 585
SduI	GDGCHC	1 cut(s)	340
SfaNI	GCATC	2 cut(s)	570, 603
SfcI	CTRYAG	1 cut(s)	318
Sfr303I	CCGCGG	1 cut(s)	229
SgrBI	CCGCGG	1 cut(s)	229
SmiMI	CAYNNNNRTG	1 cut(s)	636
SmlI	CTYRAG	1 cut(s)	361
SmoI	CTYRAG	1 cut(s)	361
SpeI	ACTAGT	1 cut(s)	428
Sse9I	AATT	1 cut(s)	385
SspMI	CTAG	1 cut(s)	429
StyD4I	CCNGG	4 cut(s)	216, 248, 485, 583
TaaI	ACNGT	2 cut(s)	621, 684
TaiI	ACGT	3 cut(s)	170, 348, 678
TaqII	GACCGA	1 cut(s)	505
TasI	AATT	1 cut(s)	385
TatI	WGTACW	1 cut(s)	30
TauI	GCSGC	9 cut(s)	164, 332, 353, 409, 455, 467, 524, 527, 651
TfiI	GAWTC	4 cut(s)	77, 294, 494, 536
TscAI	CASTG	2 cut(s)	322, 687
TseFI	GTSAC	2 cut(s)	621, 678
TseI	GCWGC	2 cut(s)	409, 455
Tsp45I	GTSAC	2 cut(s)	621, 678
TspDTI	ATGAA	2 cut(s)	140, 146
TspGWI	ACGGA	1 cut(s)	674
TspRI	CASTG	2 cut(s)	322, 687
XapI	RAATTY	1 cut(s)	385
XcmI	CCANNNNNNNNNTGG	1 cut(s)	322
XmnI	GAANNNNTTC	1 cut(s)	197
XspI	CTAG	1 cut(s)	429
ZrmI	AGTACT	1 cut(s)	32

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.