Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010680

Physical Location & Seq

Genomic Coordinates Reverse (-)

13018010 .. 13019400

Gene Structure 1391 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G25480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGAACTCATTTTCTGCTTTTTCTGAAATGTTTGGCTCCGATTACGAGTCTTCGGTTTCCTCAGGCGGTGATTATATTCCGACGCTTGCGAGCAGCTGCCCCAAGAAACCGGCGGGTCGTAAGAAGTTTCGTGAGACTCGTCACCCAATATACAGAGGAGTTCGTCGGAGAAACTCCGGTAAGTGGGTTTGTGAGGTTAGAGAACCAAACAAGAAAACAAGGATTTGGCTCGGAACATTTCAAACCGCTGAGATGGCAGCTCGAGCTCACGACGTTGCCGCTTTAGCCCTTCGTGGCCGATCAGCCTGTCTCAATTTCGCTGACTCGGCTTGGAGACTCCGAATCCCGGAATCAACTTGCGCTAAGGACATCCAAAAGGCGGCGGCTGAAGCTGCGTTGGCGTTTCAGGATGAGATGTGTGATGCGACGACGGATCATGGCTTCGACATGGAGGAGACGTTGGTGGAGGCTATTTACACGGCGGAACAGAGCGAAAATGCGTTTTATATGCACGATGAGGCGATGTTTGAGATGCCGAGTTTGTTGGCTAATATGGCAGAAGGGATGCTTTTGCCGCTTCCGTCCGTACAGTGGAATCATAATCATGAAGTCGACGGCGATGATGACGACGTATCGTTATGGAGTTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009631 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010035 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042221 GO:0043436 GO:0043565 GO:0044237 GO:0044281 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

216

Amino Acids

24.24

Weight (kDa)

5.08

Isoelectric Point (pI)

53.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	50 - 99	2.1e-15	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010680)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25470 AT4G25480 AT4G25490 AT5G51990
fragaria_vesca	FvH4_7g28950
malus_domestica	MD01G1196100.v1.1 MD07G1262900.v1.1
prunus_persica	Prupe.2G289500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0376641
rosa_laevigata	RLG00000026586
rosa_multiflora	Rmu_sc0005594.1_g000005 Rmu_sc0009616.1_g000001
rosa_roxburghii	Rroxscaffold_4G00281920 Rroxscaffold_4G00308350
rosa_rugosa	Rorug01G0397000
rosa_samantha	Rh1AG413900 Rh1BG373300 Rh1CG387200 Rh1DG404300
rosa_wichuraiana	Rw1G036310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	612
AciI	CCGC	8 cut(s)	66, 113, 246, 279, 380, 383, 482, 575
AclWI	GGATC	1 cut(s)	441
AcoI	YGGCCR	1 cut(s)	295
AcuI	CTGAAG	1 cut(s)	408
AfaI	GTAC	1 cut(s)	588
AfiI	CCNNNNNNNGG	4 cut(s)	183, 346, 379, 591
AgsI	TTSAA	1 cut(s)	242
AluBI	AGCT	4 cut(s)	96, 260, 266, 392
AluI	AGCT	4 cut(s)	96, 260, 266, 392
Alw21I	GWGCWC	1 cut(s)	268
Alw26I	GTCTC	4 cut(s)	128, 314, 328, 449
AlwI	GGATC	1 cut(s)	441
Ama87I	CYCGRG	1 cut(s)	261
AoxI	GGCC	1 cut(s)	295
ApeKI	GCWGC	4 cut(s)	93, 96, 257, 392
AspLEI	GCGC	1 cut(s)	362
AsuC2I	CCSGG	1 cut(s)	347
AsuHPI	GGTGA	2 cut(s)	80, 134
AvaI	CYCGRG	1 cut(s)	261
AxyI	CCTNAGG	1 cut(s)	61
BanII	GRGCYC	1 cut(s)	268
BbsI	GAAGAC	1 cut(s)	42
Bbv12I	GWGCWC	1 cut(s)	268
BbvI	GCAGC	4 cut(s)	83, 105, 269, 379
BccI	CCATC	1 cut(s)	247
BceAI	ACGGC	2 cut(s)	495, 631
BcnI	CCSGG	1 cut(s)	347
BcoDI	GTCTC	4 cut(s)	128, 314, 328, 449
BisI	GCNGC	8 cut(s)	94, 97, 258, 279, 381, 384, 393, 575
BlsI	GCNGC	8 cut(s)	95, 98, 259, 280, 382, 385, 394, 576
Bme1390I	CCNGG	1 cut(s)	347
BmeT110I	CYCGRG	1 cut(s)	261
BmiI	GGNNCC	1 cut(s)	37
BmrFI	CCNGG	1 cut(s)	347
BmsI	GCATC	3 cut(s)	412, 522, 555
BpiI	GAAGAC	1 cut(s)	42
Bpu10I	CCTNAGC	1 cut(s)	363
BpuMI	CCSGG	1 cut(s)	347
BsaWI	WCCGGW	1 cut(s)	176
BsaXI	ACNNNNNCTCC	2 cut(s)	443, 473
Bsc4I	CCNNNNNNNGG	4 cut(s)	183, 346, 379, 591
Bse118I	RCCGGY	1 cut(s)	109
Bse21I	CCTNAGG	1 cut(s)	61
BseGI	GGATG	3 cut(s)	369, 415, 570
BseLI	CCNNNNNNNGG	4 cut(s)	183, 346, 379, 591
BseMII	CTCAG	2 cut(s)	75, 240
BseRI	GAGGAG	2 cut(s)	171, 467
BseXI	GCAGC	4 cut(s)	83, 105, 269, 379
BshFI	GGCC	1 cut(s)	297
BsiHKAI	GWGCWC	1 cut(s)	268
BsiHKCI	CYCGRG	1 cut(s)	261
BsiSI	CCGG	3 cut(s)	110, 177, 347
BslI	CCNNNNNNNGG	4 cut(s)	183, 346, 379, 591
BsmAI	GTCTC	4 cut(s)	128, 314, 328, 449
BsmBI	CGTCTC	1 cut(s)	449
BsnI	GGCC	1 cut(s)	297
BsoBI	CYCGRG	1 cut(s)	261
Bsp1286I	GDGCHC	1 cut(s)	268
Bsp143I	GATC	2 cut(s)	299, 433
BspACI	CCGC	8 cut(s)	66, 113, 246, 279, 380, 383, 482, 575
BspANI	GGCC	1 cut(s)	297
BspCNI	CTCAG	2 cut(s)	74, 241
BspHI	TCATGA	1 cut(s)	604
BspLI	GGNNCC	1 cut(s)	37
BspPI	GGATC	1 cut(s)	441
BsrFI	RCCGGY	1 cut(s)	109
BssAI	RCCGGY	1 cut(s)	109
BssMI	GATC	2 cut(s)	299, 433
Bst4CI	ACNGT	1 cut(s)	591
BstC8I	GCNNGC	2 cut(s)	87, 91
BstDEI	CTNAG	3 cut(s)	61, 249, 363
BstF5I	GGATG	3 cut(s)	369, 415, 570
BstHHI	GCGC	1 cut(s)	362
BstKTI	GATC	2 cut(s)	302, 436
BstMAI	GTCTC	4 cut(s)	128, 314, 328, 449
BstMBI	GATC	2 cut(s)	299, 433
BstMWI	GCNNNNNNNGC	9 cut(s)	254, 263, 284, 326, 389, 392, 398, 554, 574
BstSCI	CCNGG	1 cut(s)	345
BstV1I	GCAGC	4 cut(s)	83, 105, 269, 379
BstV2I	GAAGAC	1 cut(s)	42
Bsu36I	CCTNAGG	1 cut(s)	61
BsuRI	GGCC	1 cut(s)	297
BtgZI	GCGATG	2 cut(s)	536, 633
BtsCI	GGATG	3 cut(s)	369, 415, 570
BtsIMutI	CAGTG	1 cut(s)	596
Cac8I	GCNNGC	2 cut(s)	87, 91
CciI	TCATGA	1 cut(s)	604
CfoI	GCGC	1 cut(s)	362
Cfr10I	RCCGGY	1 cut(s)	109
CseI	GACGC	1 cut(s)	91
Csp6I	GTAC	1 cut(s)	587
CviAII	CATG	3 cut(s)	437, 448, 605
CviQI	GTAC	1 cut(s)	587
DdeI	CTNAG	3 cut(s)	61, 249, 363
DpnI	GATC	2 cut(s)	301, 435
DpnII	GATC	2 cut(s)	299, 433
EaeI	YGGCCR	1 cut(s)	295
EciI	GGCGGA	1 cut(s)	497
Ecl136II	GAGCTC	1 cut(s)	266
Eco24I	GRGCYC	1 cut(s)	268
Eco53kI	GAGCTC	1 cut(s)	266
Eco57I	CTGAAG	1 cut(s)	408
Eco81I	CCTNAGG	1 cut(s)	61
Eco88I	CYCGRG	1 cut(s)	261
EcoICRI	GAGCTC	1 cut(s)	266
EcoT38I	GRGCYC	1 cut(s)	268
Esp3I	CGTCTC	1 cut(s)	449
FaeI	CATG	3 cut(s)	440, 451, 608
FalI	AAGNNNNNCTT	2 cut(s)	552, 584
FatI	CATG	3 cut(s)	436, 447, 604
FauI	CCCGC	1 cut(s)	106
FblI	GTMKAC	1 cut(s)	612
Fnu4HI	GCNGC	8 cut(s)	94, 97, 258, 279, 381, 384, 393, 575
FokI	GGATG	3 cut(s)	356, 422, 577
FriOI	GRGCYC	1 cut(s)	268
Fsp4HI	GCNGC	8 cut(s)	94, 97, 258, 279, 381, 384, 393, 575
GlaI	GCGC	1 cut(s)	361
GluI	GCNGC	8 cut(s)	94, 97, 258, 279, 381, 384, 393, 575
HaeIII	GGCC	1 cut(s)	297
HapII	CCGG	3 cut(s)	110, 177, 347
HgaI	GACGC	1 cut(s)	91
HhaI	GCGC	1 cut(s)	362
Hin1II	CATG	3 cut(s)	440, 451, 608
Hin6I	GCGC	1 cut(s)	360
HinP1I	GCGC	1 cut(s)	360
HincII	GTYRAC	1 cut(s)	613
HindII	GTYRAC	1 cut(s)	613
HinfI	GANTC	7 cut(s)	47, 136, 323, 336, 342, 350, 595
HpaII	CCGG	3 cut(s)	110, 177, 347
HphI	GGTGA	2 cut(s)	80, 134
Hpy166II	GTNNAC	1 cut(s)	613
Hpy188I	TCNGA	6 cut(s)	25, 40, 81, 168, 233, 341
Hpy188III	TCNNGA	4 cut(s)	131, 269, 407, 605
Hpy8I	GTNNAC	1 cut(s)	613
Hpy99I	CGWCG	7 cut(s)	85, 168, 275, 430, 433, 617, 632
HpyAV	CCTTC	2 cut(s)	299, 554
HpyCH4III	ACNGT	1 cut(s)	591
HpyCH4IV	ACGT	3 cut(s)	273, 458, 630
HpyCH4V	TGCA	1 cut(s)	511
HpyF10VI	GCNNNNNNNGC	9 cut(s)	254, 263, 284, 326, 389, 392, 398, 554, 574
HpyF3I	CTNAG	3 cut(s)	61, 249, 363
HpySE526I	ACGT	3 cut(s)	273, 458, 630
Hsp92II	CATG	3 cut(s)	440, 451, 608
HspAI	GCGC	1 cut(s)	360
Kzo9I	GATC	2 cut(s)	299, 433
LmnI	GCTCC	1 cut(s)	41
LpnPI	CCDG	6 cut(s)	48, 123, 190, 319, 360, 392
Lsp1109I	GCAGC	4 cut(s)	83, 105, 269, 379
LweI	GCATC	3 cut(s)	412, 522, 555
MaeII	ACGT	3 cut(s)	273, 458, 630
MaeIII	GTNAC	1 cut(s)	140
MalI	GATC	2 cut(s)	301, 435
MboI	GATC	2 cut(s)	299, 433
MboII	GAAGA	1 cut(s)	42
MhlI	GDGCHC	1 cut(s)	268
MluCI	AATT	1 cut(s)	313
MlyI	GAGTC	4 cut(s)	56, 130, 317, 330
MmeI	TCCRAC	2 cut(s)	104, 146
MnlI	CCTC	6 cut(s)	70, 149, 187, 445, 460, 511
MseI	TTAA	1 cut(s)	649
MslI	CAYNNNNRTG	1 cut(s)	603
MspA1I	CMGCKG	2 cut(s)	96, 248
MspI	CCGG	3 cut(s)	110, 177, 347
MspR9I	CCNGG	1 cut(s)	347
MwoI	GCNNNNNNNGC	9 cut(s)	254, 263, 284, 326, 389, 392, 398, 554, 574
NciI	CCSGG	1 cut(s)	347
NdeII	GATC	2 cut(s)	299, 433
NlaIII	CATG	3 cut(s)	440, 451, 608
NlaIV	GGNNCC	1 cut(s)	37
NmeAIII	GCCGAG	2 cut(s)	305, 561
NmuCI	GTSAC	1 cut(s)	140
PaeR7I	CTCGAG	1 cut(s)	261
PagI	TCATGA	1 cut(s)	604
PcsI	WCGNNNNNNNCGW	1 cut(s)	136
PfeI	GAWTC	3 cut(s)	342, 350, 595
PfoI	TCCNGGA	1 cut(s)	345
PkrI	GCNGC	8 cut(s)	95, 98, 259, 280, 382, 385, 394, 576
PleI	GAGTC	4 cut(s)	55, 130, 317, 330
PpsI	GAGTC	4 cut(s)	55, 130, 317, 330
Psp124BI	GAGCTC	1 cut(s)	268
PspN4I	GGNNCC	1 cut(s)	37
PspXI	VCTCGAGB	1 cut(s)	261
PvuII	CAGCTG	1 cut(s)	96
RsaI	GTAC	1 cut(s)	588
RsaNI	GTAC	1 cut(s)	587
RseI	CAYNNNNRTG	1 cut(s)	603
SacI	GAGCTC	1 cut(s)	268
SalI	GTCGAC	1 cut(s)	611
SaqAI	TTAA	1 cut(s)	649
SatI	GCNGC	8 cut(s)	94, 97, 258, 279, 381, 384, 393, 575
Sau3AI	GATC	2 cut(s)	299, 433
SchI	GAGTC	4 cut(s)	56, 130, 317, 330
ScrFI	CCNGG	1 cut(s)	347
SduI	GDGCHC	1 cut(s)	268
SetI	ASST	8 cut(s)	98, 198, 262, 268, 276, 394, 461, 633
SfaNI	GCATC	3 cut(s)	412, 522, 555
Sfr274I	CTCGAG	1 cut(s)	261
SlaI	CTCGAG	1 cut(s)	261
SmiMI	CAYNNNNRTG	1 cut(s)	603
SmlI	CTYRAG	1 cut(s)	261
SmoI	CTYRAG	1 cut(s)	261
Sse9I	AATT	1 cut(s)	313
SsiI	CCGC	8 cut(s)	66, 113, 246, 279, 380, 383, 482, 575
SstI	GAGCTC	1 cut(s)	268
StyD4I	CCNGG	1 cut(s)	345
TaaI	ACNGT	1 cut(s)	591
TaiI	ACGT	3 cut(s)	276, 461, 633
TaqI	TCGA	3 cut(s)	262, 444, 612
TasI	AATT	1 cut(s)	313
TauI	GCSGC	4 cut(s)	281, 383, 386, 577
TfiI	GAWTC	3 cut(s)	342, 350, 595
Tru1I	TTAA	1 cut(s)	649
Tru9I	TTAA	1 cut(s)	649
TscAI	CASTG	1 cut(s)	596
TseFI	GTSAC	1 cut(s)	140
TseI	GCWGC	4 cut(s)	93, 96, 257, 392
Tsp45I	GTSAC	1 cut(s)	140
TspDTI	ATGAA	2 cut(s)	17, 621
TspGWI	ACGGA	3 cut(s)	446, 570, 574
TspRI	CASTG	1 cut(s)	596
XhoI	CTCGAG	1 cut(s)	261
XmiI	GTMKAC	1 cut(s)	612

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.