Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0010680

Physical Location & Seq

Genomic Coordinates Reverse (-)

33199100 .. 33199765

Gene Structure 666 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1262900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGGATGGTTGCTCTAATTACTACGTGGACCCACCGGGGGAATCGTCGTCGGCTTCGGACACCAGCAGTGCTCGCCCCATGTTCCTGACCTTGTCGGACAAGGAGGTACTGCTGGCGTCTACTTGCCCGAAGAAGCGGGCTGGACGGAAGAAGTTTAGAGAGACACGGCACCCGGTGTTTCGGGGTGTAAGGAGGAGGAACTCCGGCAAGTGGGTGTGCGAGGTGCGCGAGCCCAACAAAAAGACAAGGATTTGGCTGGGCACTTTTCCCACCGCAGAAATGGCCGCCCGCGCGCACGACGTGGCGGCAATTGCACTGAGGGGCAGGTCCGCCTGCCTTAATTTTGCTGACTCCGCTAGGAGGCTGCCTGTCCCGGCTTCTTCCAACGCCAAGGACATTCAGACGGCTGCCACAGAAGCAGCAGAGGCGTTTCGGCCTACTGAGGAGTCGGATGAGGTTTGTGGATCTCCTGTGGCGGCTCCATCGGAGTCCACGTCCGCATCGGAGCAGCAACAAGTGTTCTATATGGACGAGGAGGCGGTTTTCGGGATGCCGGGACTGCTGGCAGACATGGCGGAAGGAATGCTATTGCCTCCACCCCATTACAGTGATGATGATGACGTGGATGTTTGTGCTGACGTGCCCTTATGGAGTTTTTCCATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009631 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010035 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042221 GO:0043436 GO:0043565 GO:0044237 GO:0044281 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

222

Amino Acids

24.1

Weight (kDa)

5.21

Isoelectric Point (pI)

64.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	58 - 108	7.4e-16	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010680)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25470 AT4G25480 AT4G25490 AT5G51990
fragaria_vesca	FvH4_7g28950
malus_domestica	MD01G1196100.v1.1 MD07G1262900.v1.1
prunus_persica	Prupe.2G289500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0376641
rosa_laevigata	RLG00000026586
rosa_multiflora	Rmu_sc0005594.1_g000005 Rmu_sc0009616.1_g000001
rosa_roxburghii	Rroxscaffold_4G00281920 Rroxscaffold_4G00308350
rosa_rugosa	Rorug01G0397000
rosa_samantha	Rh1AG413900 Rh1BG373300 Rh1CG387200 Rh1DG404300
rosa_wichuraiana	Rw1G036310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	315
AccB1I	GGYRCC	1 cut(s)	168
AccI	GTMKAC	1 cut(s)	119
AccII	CGCG	3 cut(s)	228, 291, 293
AclWI	GGATC	1 cut(s)	472
AcoI	YGGCCR	1 cut(s)	282
AcyI	GRCGYC	1 cut(s)	116
AdeI	CACNNNGTG	2 cut(s)	175, 301
AfaI	GTAC	1 cut(s)	108
AfiI	CCNNNNNNNGG	3 cut(s)	37, 210, 360
AjiI	CACGTC	4 cut(s)	301, 495, 622, 640
Alw21I	GWGCWC	1 cut(s)	73
Alw26I	GTCTC	1 cut(s)	155
AlwI	GGATC	1 cut(s)	472
AoxI	GGCC	2 cut(s)	282, 434
ApeKI	GCWGC	4 cut(s)	364, 407, 419, 508
AspLEI	GCGC	3 cut(s)	228, 293, 295
AspS9I	GGNCC	2 cut(s)	28, 327
AsuC2I	CCSGG	4 cut(s)	36, 173, 374, 555
AvaII	GGWCC	2 cut(s)	28, 327
BaeGI	GKGCMC	2 cut(s)	263, 645
BanI	GGYRCC	1 cut(s)	168
BanII	GRGCYC	1 cut(s)	234
Bbv12I	GWGCWC	1 cut(s)	73
BbvI	GCAGC	4 cut(s)	351, 394, 431, 520
BccI	CCATC	1 cut(s)	490
BceAI	ACGGC	2 cut(s)	182, 420
BcnI	CCSGG	4 cut(s)	36, 173, 374, 555
BcoDI	GTCTC	1 cut(s)	155
BfaI	CTAG	1 cut(s)	357
BfuAI	ACCTGC	1 cut(s)	315
BisI	GCNGC	7 cut(s)	285, 306, 365, 408, 420, 477, 509
BlsI	GCNGC	7 cut(s)	286, 307, 366, 409, 421, 478, 510
Bme1390I	CCNGG	4 cut(s)	36, 173, 374, 555
Bme18I	GGWCC	2 cut(s)	28, 327
BmgBI	CACGTC	4 cut(s)	301, 495, 622, 640
BmgT120I	GGNCC	2 cut(s)	28, 327
BmiI	GGNNCC	3 cut(s)	30, 170, 480
BmrFI	CCNGG	4 cut(s)	36, 173, 374, 555
BmsI	GCATC	2 cut(s)	509, 540
BpuMI	CCSGG	4 cut(s)	36, 173, 374, 555
BsaAI	YACGTR	1 cut(s)	25
BsaHI	GRCGYC	1 cut(s)	116
BsaJI	CCNNGG	2 cut(s)	35, 390
BsaXI	ACNNNNNCTCC	2 cut(s)	479, 509
Bsc4I	CCNNNNNNNGG	3 cut(s)	37, 210, 360
BseDI	CCNNGG	2 cut(s)	35, 390
BseGI	GGATG	4 cut(s)	10, 457, 555, 631
BseLI	CCNNNNNNNGG	3 cut(s)	37, 210, 360
BseMII	CTCAG	2 cut(s)	308, 432
BsePI	GCGCGC	1 cut(s)	291
BseRI	GAGGAG	3 cut(s)	208, 458, 548
BseSI	GKGCMC	2 cut(s)	263, 645
BseXI	GCAGC	4 cut(s)	351, 394, 431, 520
BseYI	CCCAGC	1 cut(s)	256
Bsh1236I	CGCG	3 cut(s)	228, 291, 293
BshFI	GGCC	2 cut(s)	284, 436
BshNI	GGYRCC	1 cut(s)	168
BsiHKAI	GWGCWC	1 cut(s)	73
BsiSI	CCGG	5 cut(s)	35, 173, 204, 374, 554
BslFI	GGGAC	2 cut(s)	356, 570
BslI	CCNNNNNNNGG	3 cut(s)	37, 210, 360
BsmAI	GTCTC	1 cut(s)	155
BsmFI	GGGAC	2 cut(s)	356, 570
BsmI	GAATGC	1 cut(s)	588
BsnI	GGCC	2 cut(s)	284, 436
Bsp1286I	GDGCHC	4 cut(s)	73, 234, 263, 645
Bsp143I	GATC	1 cut(s)	464
BspANI	GGCC	2 cut(s)	284, 436
BspCNI	CTCAG	2 cut(s)	309, 433
BspFNI	CGCG	3 cut(s)	228, 291, 293
BspLI	GGNNCC	3 cut(s)	30, 170, 480
BspMI	ACCTGC	1 cut(s)	315
BspPI	GGATC	1 cut(s)	472
BspT107I	GGYRCC	1 cut(s)	168
BssECI	CCNNGG	2 cut(s)	35, 390
BssHII	GCGCGC	1 cut(s)	291
BssMI	GATC	1 cut(s)	464
BssNI	GRCGYC	1 cut(s)	116
BssT1I	CCWWGG	1 cut(s)	390
Bst4CI	ACNGT	1 cut(s)	608
BstACI	GRCGYC	1 cut(s)	116
BstBAI	YACGTR	1 cut(s)	25
BstC8I	GCNNGC	8 cut(s)	73, 114, 138, 230, 289, 293, 334, 564
BstDEI	CTNAG	2 cut(s)	317, 441
BstF5I	GGATG	4 cut(s)	10, 457, 555, 631
BstFNI	CGCG	3 cut(s)	228, 291, 293
BstHHI	GCGC	3 cut(s)	228, 293, 295
BstKTI	GATC	1 cut(s)	467
BstMAI	GTCTC	1 cut(s)	155
BstMBI	GATC	1 cut(s)	464
BstSCI	CCNGG	4 cut(s)	34, 171, 372, 553
BstSLI	GKGCMC	2 cut(s)	263, 645
BstUI	CGCG	3 cut(s)	228, 291, 293
BstV1I	GCAGC	4 cut(s)	351, 394, 431, 520
BstX2I	RGATCY	1 cut(s)	464
BstYI	RGATCY	1 cut(s)	464
BsuRI	GGCC	2 cut(s)	284, 436
BtrI	CACGTC	4 cut(s)	301, 495, 622, 640
BtsCI	GGATG	4 cut(s)	10, 457, 555, 631
BtsI	GCAGTG	1 cut(s)	73
BtsIMutI	CAGTG	3 cut(s)	73, 314, 613
BveI	ACCTGC	1 cut(s)	315
Cac8I	GCNNGC	8 cut(s)	73, 114, 138, 230, 289, 293, 334, 564
CfoI	GCGC	3 cut(s)	228, 293, 295
Cfr13I	GGNCC	2 cut(s)	28, 327
CseI	GACGC	1 cut(s)	105
Csp6I	GTAC	1 cut(s)	107
CviAII	CATG	2 cut(s)	79, 571
CviQI	GTAC	1 cut(s)	107
DdeI	CTNAG	2 cut(s)	317, 441
DpnI	GATC	1 cut(s)	466
DpnII	GATC	1 cut(s)	464
DraIII	CACNNNGTG	2 cut(s)	175, 301
EaeI	YGGCCR	1 cut(s)	282
EciI	GGCGGA	2 cut(s)	319, 590
Eco130I	CCWWGG	1 cut(s)	390
Eco24I	GRGCYC	1 cut(s)	234
Eco47I	GGWCC	2 cut(s)	28, 327
EcoT14I	CCWWGG	1 cut(s)	390
EcoT38I	GRGCYC	1 cut(s)	234
ErhI	CCWWGG	1 cut(s)	390
FaeI	CATG	2 cut(s)	82, 574
FaiI	YATR	5 cut(s)	80, 525, 527, 572, 649
FaqI	GGGAC	2 cut(s)	356, 570
FatI	CATG	2 cut(s)	78, 570
FauI	CCCGC	2 cut(s)	129, 296
FblI	GTMKAC	1 cut(s)	119
Fnu4HI	GCNGC	7 cut(s)	285, 306, 365, 408, 420, 477, 509
FokI	GGATG	4 cut(s)	17, 464, 562, 638
FriOI	GRGCYC	1 cut(s)	234
Fsp4HI	GCNGC	7 cut(s)	285, 306, 365, 408, 420, 477, 509
FspBI	CTAG	1 cut(s)	357
GlaI	GCGC	3 cut(s)	227, 292, 294
GluI	GCNGC	7 cut(s)	285, 306, 365, 408, 420, 477, 509
GsaI	CCCAGC	1 cut(s)	260
HaeIII	GGCC	2 cut(s)	284, 436
HapII	CCGG	5 cut(s)	35, 173, 204, 374, 554
HgaI	GACGC	1 cut(s)	105
HhaI	GCGC	3 cut(s)	228, 293, 295
Hin1I	GRCGYC	1 cut(s)	116
Hin1II	CATG	2 cut(s)	82, 574
Hin6I	GCGC	3 cut(s)	226, 291, 293
HinP1I	GCGC	3 cut(s)	226, 291, 293
HinfI	GANTC	4 cut(s)	41, 350, 446, 488
HpaII	CCGG	5 cut(s)	35, 173, 204, 374, 554
Hpy166II	GTNNAC	3 cut(s)	28, 120, 492
Hpy188I	TCNGA	6 cut(s)	58, 97, 402, 451, 487, 505
Hpy188III	TCNNGA	2 cut(s)	85, 547
Hpy8I	GTNNAC	3 cut(s)	28, 120, 492
Hpy99I	CGWCG	3 cut(s)	49, 52, 302
HpyAV	CCTTC	1 cut(s)	572
HpyCH4III	ACNGT	1 cut(s)	608
HpyCH4IV	ACGT	5 cut(s)	24, 300, 494, 621, 639
HpyCH4V	TGCA	1 cut(s)	314
HpyF3I	CTNAG	2 cut(s)	317, 441
HpySE526I	ACGT	5 cut(s)	24, 300, 494, 621, 639
Hsp92I	GRCGYC	1 cut(s)	116
Hsp92II	CATG	2 cut(s)	82, 574
HspAI	GCGC	3 cut(s)	226, 291, 293
Kzo9I	GATC	1 cut(s)	464
LmnI	GCTCC	2 cut(s)	484, 505
Lsp1109I	GCAGC	4 cut(s)	351, 394, 431, 520
LweI	GCATC	2 cut(s)	509, 540
MaeI	CTAG	1 cut(s)	357
MaeII	ACGT	5 cut(s)	24, 300, 494, 621, 639
MalI	GATC	1 cut(s)	466
MboI	GATC	1 cut(s)	464
MboII	GAAGA	3 cut(s)	142, 160, 372
MfeI	CAATTG	1 cut(s)	309
MflI	RGATCY	1 cut(s)	464
MhlI	GDGCHC	4 cut(s)	73, 234, 263, 645
MluCI	AATT	3 cut(s)	16, 309, 340
MlyI	GAGTC	3 cut(s)	344, 455, 497
MmeI	TCCRAC	3 cut(s)	75, 408, 429
MseI	TTAA	2 cut(s)	339, 664
MslI	CAYNNNNRTG	1 cut(s)	606
MspI	CCGG	5 cut(s)	35, 173, 204, 374, 554
MspR9I	CCNGG	4 cut(s)	36, 173, 374, 555
MunI	CAATTG	1 cut(s)	309
Mva1269I	GAATGC	1 cut(s)	588
MvnI	CGCG	3 cut(s)	228, 291, 293
NciI	CCSGG	4 cut(s)	36, 173, 374, 555
NdeII	GATC	1 cut(s)	464
NlaIII	CATG	2 cut(s)	82, 574
NlaIV	GGNNCC	3 cut(s)	30, 170, 480
PauI	GCGCGC	1 cut(s)	291
PcsI	WCGNNNNNNNCGW	1 cut(s)	491
PctI	GAATGC	1 cut(s)	588
PfeI	GAWTC	1 cut(s)	41
PflFI	GACNNNGTC	1 cut(s)	91
PkrI	GCNGC	7 cut(s)	286, 307, 366, 409, 421, 478, 510
PleI	GAGTC	3 cut(s)	344, 454, 496
PpsI	GAGTC	3 cut(s)	344, 454, 496
Ppu21I	YACGTR	1 cut(s)	25
PspFI	CCCAGC	1 cut(s)	256
PspN4I	GGNNCC	3 cut(s)	30, 170, 480
PspPI	GGNCC	2 cut(s)	28, 327
PsuI	RGATCY	1 cut(s)	464
PsyI	GACNNNGTC	1 cut(s)	91
PteI	GCGCGC	1 cut(s)	291
RsaI	GTAC	1 cut(s)	108
RsaNI	GTAC	1 cut(s)	107
RseI	CAYNNNNRTG	1 cut(s)	606
SaqAI	TTAA	2 cut(s)	339, 664
SatI	GCNGC	7 cut(s)	285, 306, 365, 408, 420, 477, 509
Sau3AI	GATC	1 cut(s)	464
Sau96I	GGNCC	2 cut(s)	28, 327
SchI	GAGTC	3 cut(s)	344, 455, 497
ScrFI	CCNGG	4 cut(s)	36, 173, 374, 555
SduI	GDGCHC	4 cut(s)	73, 234, 263, 645
SfaNI	GCATC	2 cut(s)	509, 540
SinI	GGWCC	2 cut(s)	28, 327
SmiMI	CAYNNNNRTG	1 cut(s)	606
Sse9I	AATT	3 cut(s)	16, 309, 340
SspMI	CTAG	1 cut(s)	357
StyD4I	CCNGG	4 cut(s)	34, 171, 372, 553
StyI	CCWWGG	1 cut(s)	390
TaaI	ACNGT	1 cut(s)	608
TaiI	ACGT	5 cut(s)	27, 303, 497, 624, 642
TasI	AATT	3 cut(s)	16, 309, 340
TauI	GCSGC	3 cut(s)	287, 308, 479
TfiI	GAWTC	1 cut(s)	41
Tru1I	TTAA	2 cut(s)	339, 664
Tru9I	TTAA	2 cut(s)	339, 664
TscAI	CASTG	3 cut(s)	73, 321, 613
TseI	GCWGC	4 cut(s)	364, 407, 419, 508
TspGWI	ACGGA	1 cut(s)	160
TspRI	CASTG	3 cut(s)	73, 321, 613
Tth111I	GACNNNGTC	1 cut(s)	91
VpaK11BI	GGWCC	2 cut(s)	28, 327
XcmI	CCANNNNNNNNNTGG	1 cut(s)	277
XmiI	GTMKAC	1 cut(s)	119
XspI	CTAG	1 cut(s)	357

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.