Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0010680

Physical Location & Seq

Genomic Coordinates Reverse (-)

64617385 .. 64618336

Gene Structure 952 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG413900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGGATGGTGGATTTTCAGCTTTCCCTCAGTACTATGATCATAACACGCAGTACCCATTTGGTTCGGATTTGCCGGAATCATCGTCTCATTCTGACAACAACAGCGGTAATGGCGTTGGTAGGATGAACTTGTCGGACGAGGAGGTCATGCTGGCGGCGACGTACCCGAAGAAGAGGGCGGGAAGGAAGAAGTTCAAGGAGACGAGGCACCCGGTGTACCGCGGCGTAAGGAGGAGGAACTCCGGGAAGTGGGTTTGCGAGGTTCGTGAGCCGAATAAGAAGACGAGAATCTGGCTCGGGACTTTCCCCACTGCAGAAATGGCGGCGCGTGCTCACGACGTGGCGGCAATTTCCTTGAGGGGGCGGTCTGCTTGCTTGAATTTCGCGGACTCGGCGTGGCGGCTGCCGGTGCCGGCTTCTACTAGTGCTAAGGACATACAGACGGCGGCTGCTCAGGCGGCGGAGGCGAGATCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009631 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010035 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042221 GO:0043436 GO:0043565 GO:0044237 GO:0044281 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

158

Amino Acids

17.46

Weight (kDa)

9.77

Isoelectric Point (pI)

52.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	71 - 121	1.8e-16	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010680)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25470 AT4G25480 AT4G25490 AT5G51990
fragaria_vesca	FvH4_7g28950
malus_domestica	MD01G1196100.v1.1 MD07G1262900.v1.1
prunus_persica	Prupe.2G289500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0376641
rosa_laevigata	RLG00000026586
rosa_multiflora	Rmu_sc0005594.1_g000005 Rmu_sc0009616.1_g000001
rosa_roxburghii	Rroxscaffold_4G00281920 Rroxscaffold_4G00308350
rosa_rugosa	Rorug01G0397000
rosa_samantha	Rh1AG413900 Rh1BG373300 Rh1CG387200 Rh1DG404300
rosa_wichuraiana	Rw1G036310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	143
AccB1I	GGYRCC	2 cut(s)	207, 409
AccII	CGCG	3 cut(s)	222, 328, 386
AcsI	RAATTY	1 cut(s)	379
AdeI	CACNNNGTG	2 cut(s)	214, 340
AfaI	GTAC	4 cut(s)	32, 53, 164, 218
AfiI	CCNNNNNNNGG	2 cut(s)	249, 360
AgsI	TTSAA	2 cut(s)	196, 379
AhlI	ACTAGT	1 cut(s)	422
AjiI	CACGTC	1 cut(s)	340
AluBI	AGCT	1 cut(s)	20
AluI	AGCT	1 cut(s)	20
Alw21I	GWGCWC	1 cut(s)	334
Alw26I	GTCTC	2 cut(s)	90, 194
Ama87I	CYCGRG	1 cut(s)	296
ApeKI	GCWGC	2 cut(s)	403, 449
ApoI	RAATTY	1 cut(s)	379
Asp700I	GAANNNNTTC	1 cut(s)	191
AspLEI	GCGC	1 cut(s)	328
AsuC2I	CCSGG	2 cut(s)	212, 244
AvaI	CYCGRG	1 cut(s)	296
BanI	GGYRCC	2 cut(s)	207, 409
BbsI	GAAGAC	1 cut(s)	287
Bbv12I	GWGCWC	1 cut(s)	334
BbvI	GCAGC	2 cut(s)	390, 436
BceAI	ACGGC	1 cut(s)	459
BclI	TGATCA	1 cut(s)	37
BcnI	CCSGG	2 cut(s)	212, 244
BcoDI	GTCTC	2 cut(s)	90, 194
BcuI	ACTAGT	1 cut(s)	422
BfaI	CTAG	1 cut(s)	423
BfmI	CTRYAG	1 cut(s)	312
BisI	GCNGC	9 cut(s)	156, 223, 324, 345, 401, 404, 447, 450, 459
BlsI	GCNGC	9 cut(s)	157, 224, 325, 346, 402, 405, 448, 451, 460
BmcAI	AGTACT	1 cut(s)	32
Bme1390I	CCNGG	2 cut(s)	212, 244
BmeT110I	CYCGRG	1 cut(s)	296
BmgBI	CACGTC	1 cut(s)	340
BmiI	GGNNCC	2 cut(s)	209, 411
BmrFI	CCNGG	2 cut(s)	212, 244
BpiI	GAAGAC	1 cut(s)	287
Bpu10I	CCTNAGC	2 cut(s)	429, 453
BpuEI	CTTGAG	1 cut(s)	376
BpuMI	CCSGG	2 cut(s)	212, 244
BsaJI	CCNNGG	1 cut(s)	220
Bsc4I	CCNNNNNNNGG	2 cut(s)	249, 360
Bse118I	RCCGGY	2 cut(s)	406, 412
BseDI	CCNNGG	1 cut(s)	220
BseGI	GGATG	2 cut(s)	10, 129
BseLI	CCNNNNNNNGG	2 cut(s)	249, 360
BseMII	CTCAG	2 cut(s)	41, 467
BseRI	GAGGAG	2 cut(s)	155, 247
BseXI	GCAGC	2 cut(s)	390, 436
Bsh1236I	CGCG	3 cut(s)	222, 328, 386
BshNI	GGYRCC	2 cut(s)	207, 409
BsiHKAI	GWGCWC	1 cut(s)	334
BsiHKCI	CYCGRG	1 cut(s)	296
BsiSI	CCGG	5 cut(s)	74, 212, 243, 407, 413
BslFI	GGGAC	1 cut(s)	313
BslI	CCNNNNNNNGG	2 cut(s)	249, 360
BsmAI	GTCTC	2 cut(s)	90, 194
BsmBI	CGTCTC	2 cut(s)	90, 194
BsmFI	GGGAC	1 cut(s)	313
BsoBI	CYCGRG	1 cut(s)	296
Bsp1286I	GDGCHC	1 cut(s)	334
Bsp143I	GATC	2 cut(s)	37, 470
BspCNI	CTCAG	2 cut(s)	40, 466
BspFNI	CGCG	3 cut(s)	222, 328, 386
BspLI	GGNNCC	2 cut(s)	209, 411
BspMAI	CTGCAG	1 cut(s)	316
BspT107I	GGYRCC	2 cut(s)	207, 409
BsrFI	RCCGGY	2 cut(s)	406, 412
BssAI	RCCGGY	2 cut(s)	406, 412
BssECI	CCNNGG	1 cut(s)	220
BssMI	GATC	2 cut(s)	37, 470
Bst6I	CTCTTC	1 cut(s)	167
BstC8I	GCNNGC	4 cut(s)	153, 330, 373, 414
BstDEI	CTNAG	3 cut(s)	27, 429, 453
BstDSI	CCRYGG	1 cut(s)	220
BstF5I	GGATG	2 cut(s)	10, 129
BstFNI	CGCG	3 cut(s)	222, 328, 386
BstHHI	GCGC	1 cut(s)	328
BstKTI	GATC	2 cut(s)	40, 473
BstMAI	GTCTC	2 cut(s)	90, 194
BstMBI	GATC	2 cut(s)	37, 470
BstMWI	GCNNNNNNNGC	8 cut(s)	111, 320, 329, 392, 409, 455, 458, 464
BstSCI	CCNGG	2 cut(s)	210, 242
BstSFI	CTRYAG	1 cut(s)	312
BstUI	CGCG	3 cut(s)	222, 328, 386
BstV1I	GCAGC	2 cut(s)	390, 436
BstV2I	GAAGAC	1 cut(s)	287
BtgI	CCRYGG	1 cut(s)	220
BtrI	CACGTC	1 cut(s)	340
BtsCI	GGATG	2 cut(s)	10, 129
BtsI	GCAGTG	1 cut(s)	309
BtsIMutI	CAGTG	1 cut(s)	309
Cac8I	GCNNGC	4 cut(s)	153, 330, 373, 414
CfoI	GCGC	1 cut(s)	328
Cfr10I	RCCGGY	2 cut(s)	406, 412
Cfr42I	CCGCGG	1 cut(s)	223
Csp6I	GTAC	4 cut(s)	31, 52, 163, 217
CviAII	CATG	1 cut(s)	148
CviJI	RGCY	6 cut(s)	20, 271, 295, 403, 416, 449
CviKI_1	RGCY	6 cut(s)	20, 271, 295, 403, 416, 449
CviQI	GTAC	4 cut(s)	31, 52, 163, 217
DdeI	CTNAG	3 cut(s)	27, 429, 453
DpnI	GATC	2 cut(s)	39, 472
DpnII	GATC	2 cut(s)	37, 470
DraIII	CACNNNGTG	2 cut(s)	214, 340
DrdI	GACNNNNNNGTC	1 cut(s)	143
DseDI	GACNNNNNNGTC	1 cut(s)	143
Eam1104I	CTCTTC	1 cut(s)	167
EarI	CTCTTC	1 cut(s)	167
EciI	GGCGGA	1 cut(s)	476
Eco88I	CYCGRG	1 cut(s)	296
Esp3I	CGTCTC	2 cut(s)	90, 194
FaeI	CATG	1 cut(s)	151
FaiI	YATR	4 cut(s)	36, 42, 149, 437
FaqI	GGGAC	1 cut(s)	313
FatI	CATG	1 cut(s)	147
FauI	CCCGC	1 cut(s)	172
FbaI	TGATCA	1 cut(s)	37
Fnu4HI	GCNGC	9 cut(s)	156, 223, 324, 345, 401, 404, 447, 450, 459
FokI	GGATG	2 cut(s)	17, 136
Fsp4HI	GCNGC	9 cut(s)	156, 223, 324, 345, 401, 404, 447, 450, 459
FspBI	CTAG	1 cut(s)	423
GlaI	GCGC	1 cut(s)	327
GluI	GCNGC	9 cut(s)	156, 223, 324, 345, 401, 404, 447, 450, 459
HapII	CCGG	5 cut(s)	74, 212, 243, 407, 413
HhaI	GCGC	1 cut(s)	328
Hin1II	CATG	1 cut(s)	151
Hin6I	GCGC	1 cut(s)	326
HinP1I	GCGC	1 cut(s)	326
HinfI	GANTC	3 cut(s)	77, 288, 389
HpaII	CCGG	5 cut(s)	74, 212, 243, 407, 413
Hpy166II	GTNNAC	1 cut(s)	217
Hpy188I	TCNGA	3 cut(s)	67, 94, 136
Hpy188III	TCNNGA	4 cut(s)	266, 298, 335, 474
Hpy8I	GTNNAC	1 cut(s)	217
Hpy99I	CGWCG	2 cut(s)	163, 341
HpyAV	CCTTC	1 cut(s)	177
HpyCH4IV	ACGT	2 cut(s)	161, 339
HpyCH4V	TGCA	1 cut(s)	314
HpyF10VI	GCNNNNNNNGC	8 cut(s)	111, 320, 329, 392, 409, 455, 458, 464
HpyF3I	CTNAG	3 cut(s)	27, 429, 453
HpySE526I	ACGT	2 cut(s)	161, 339
Hsp92II	CATG	1 cut(s)	151
HspAI	GCGC	1 cut(s)	326
KroI	GCCGGC	1 cut(s)	412
KroNI	GCCGGC	1 cut(s)	414
Ksp22I	TGATCA	1 cut(s)	37
KspI	CCGCGG	1 cut(s)	223
Kzo9I	GATC	2 cut(s)	37, 470
LpnPI	CCDG	8 cut(s)	87, 137, 225, 256, 277, 420, 426, 440
Lsp1109I	GCAGC	2 cut(s)	390, 436
MaeI	CTAG	1 cut(s)	423
MaeII	ACGT	2 cut(s)	161, 339
MalI	GATC	2 cut(s)	39, 472
MboI	GATC	2 cut(s)	37, 470
MboII	GAAGA	4 cut(s)	181, 184, 199, 292
MhlI	GDGCHC	1 cut(s)	334
MluCI	AATT	2 cut(s)	348, 379
MlyI	GAGTC	1 cut(s)	383
MmeI	TCCRAC	1 cut(s)	114
MroNI	GCCGGC	1 cut(s)	412
MroXI	GAANNNNTTC	1 cut(s)	191
MspA1I	CMGCKG	2 cut(s)	105, 222
MspI	CCGG	5 cut(s)	74, 212, 243, 407, 413
MspR9I	CCNGG	2 cut(s)	212, 244
MvnI	CGCG	3 cut(s)	222, 328, 386
MwoI	GCNNNNNNNGC	8 cut(s)	111, 320, 329, 392, 409, 455, 458, 464
NaeI	GCCGGC	1 cut(s)	414
NciI	CCSGG	2 cut(s)	212, 244
NdeII	GATC	2 cut(s)	37, 470
NgoMIV	GCCGGC	1 cut(s)	412
NlaIII	CATG	1 cut(s)	151
NlaIV	GGNNCC	2 cut(s)	209, 411
NmeAIII	GCCGAG	1 cut(s)	371
PdiI	GCCGGC	1 cut(s)	414
PdmI	GAANNNNTTC	1 cut(s)	191
PfeI	GAWTC	2 cut(s)	77, 288
PfoI	TCCNGGA	1 cut(s)	242
PkrI	GCNGC	9 cut(s)	157, 224, 325, 346, 402, 405, 448, 451, 460
PleI	GAGTC	1 cut(s)	383
PpsI	GAGTC	1 cut(s)	383
PspN4I	GGNNCC	2 cut(s)	209, 411
PstI	CTGCAG	1 cut(s)	316
RsaI	GTAC	4 cut(s)	32, 53, 164, 218
RsaNI	GTAC	4 cut(s)	31, 52, 163, 217
SacII	CCGCGG	1 cut(s)	223
SatI	GCNGC	9 cut(s)	156, 223, 324, 345, 401, 404, 447, 450, 459
Sau3AI	GATC	2 cut(s)	37, 470
ScaI	AGTACT	1 cut(s)	32
SchI	GAGTC	1 cut(s)	383
ScrFI	CCNGG	2 cut(s)	212, 244
SduI	GDGCHC	1 cut(s)	334
SetI	ASST	5 cut(s)	22, 147, 164, 264, 342
SfcI	CTRYAG	1 cut(s)	312
Sfr303I	CCGCGG	1 cut(s)	223
SgrBI	CCGCGG	1 cut(s)	223
SmlI	CTYRAG	1 cut(s)	355
SmoI	CTYRAG	1 cut(s)	355
SpeI	ACTAGT	1 cut(s)	422
Sse9I	AATT	2 cut(s)	348, 379
SspMI	CTAG	1 cut(s)	423
StyD4I	CCNGG	2 cut(s)	210, 242
TaiI	ACGT	2 cut(s)	164, 342
TasI	AATT	2 cut(s)	348, 379
TatI	WGTACW	1 cut(s)	30
TauI	GCSGC	7 cut(s)	158, 225, 326, 347, 403, 449, 461
TfiI	GAWTC	2 cut(s)	77, 288
TscAI	CASTG	1 cut(s)	316
TseI	GCWGC	2 cut(s)	403, 449
TspDTI	ATGAA	1 cut(s)	140
TspRI	CASTG	1 cut(s)	316
XapI	RAATTY	1 cut(s)	379
XcmI	CCANNNNNNNNNTGG	1 cut(s)	316
XmnI	GAANNNNTTC	1 cut(s)	191
XspI	CTAG	1 cut(s)	423
ZrmI	AGTACT	1 cut(s)	32

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.