Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0010680

Physical Location & Seq

Genomic Coordinates Reverse (-)

28398585 .. 28399274

Gene Structure 690 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G289500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGGATGGTTTTTGTCCTTACTACGTCGACCCACAAACTTGTGGCGCCTCCTCCGAGGTACCGGAATCTTCGTCCGCTTCCGACAACAGCAGTGCTCGCCCTGTATCCGTGAACTTTTCGGACGAGGAGCTCCTGCTGGCGTCCACTTATCCCAAGAAGCGGGCCGGTCGGAAGAAGTTCAAGGAGACTCGGCACCCCGTGTACCGCGGTGTCAGGAGAAGGAACTCCGGGAAGTGGGTTTGCGAGGTGCGGGAGCCCAACAAGAAGACCAGGATTTGGCTCGGGACTTTCCCCACAGCCGAAATGGCAGCGCGAGCTCATGACGTGGCGGCCATCAAGCTCAGAGGTCGGTCTGCTTGCTTGAACTTTGCCGACTCCGCGTGGCGGCTGCCTGTCCCGGCTTCAGCAAACGCCAAGGATATTCAAACCACAGCTTCCGAGGCTGCTGAGGCGTTTCGGCCACCTGCGGAGGGGTCGGTTGAGGTTTCTGGAGCTTCGGCGGTGGCCGCGTCAGAAAGCAAGTCAGCATCGGAACAAGTGTTTTATATGGATGAGGAGGCTGTTTTTGGGATGCCAGGACTCCTCGCAAATATGGCCGAAGGGATGCTGTTGTCTCCACCTCTTTACACCGAGGATGACGATGACGTGGAATTTTATGCTGACGTGCCACTATGGAGTTATTCGATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009631 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010035 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042221 GO:0043436 GO:0043565 GO:0044237 GO:0044281 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

230

Amino Acids

24.98

Weight (kDa)

5.14

Isoelectric Point (pI)

58.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010680)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25470 AT4G25480 AT4G25490 AT5G51990
fragaria_vesca	FvH4_7g28950
malus_domestica	MD01G1196100.v1.1 MD07G1262900.v1.1
prunus_persica	Prupe.2G289500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0376641
rosa_laevigata	RLG00000026586
rosa_multiflora	Rmu_sc0005594.1_g000005 Rmu_sc0009616.1_g000001
rosa_roxburghii	Rroxscaffold_4G00281920 Rroxscaffold_4G00308350
rosa_rugosa	Rorug01G0397000
rosa_samantha	Rh1AG413900 Rh1BG373300 Rh1CG387200 Rh1DG404300
rosa_wichuraiana	Rw1G036310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	472
Acc36I	ACCTGC	1 cut(s)	472
Acc65I	GGTACC	1 cut(s)	58
AccB1I	GGYRCC	3 cut(s)	44, 58, 192
AccB7I	CCANNNNNTGG	1 cut(s)	276
AccI	GTMKAC	1 cut(s)	27
AccII	CGCG	4 cut(s)	207, 313, 380, 509
AcoI	YGGCCR	4 cut(s)	330, 458, 504, 594
AcsI	RAATTY	1 cut(s)	650
AcuI	CTGAAG	1 cut(s)	387
AcyI	GRCGYC	2 cut(s)	45, 140
AdeI	CACNNNGTG	1 cut(s)	199
AfaI	GTAC	2 cut(s)	60, 203
AfiI	CCNNNNNNNGG	5 cut(s)	159, 234, 276, 384, 470
AgsI	TTSAA	3 cut(s)	181, 364, 425
AjiI	CACGTC	3 cut(s)	325, 646, 664
AjnI	CCWGG	2 cut(s)	269, 574
AluBI	AGCT	5 cut(s)	130, 317, 340, 434, 494
AluI	AGCT	5 cut(s)	130, 317, 340, 434, 494
Alw21I	GWGCWC	3 cut(s)	97, 132, 319
Alw26I	GTCTC	2 cut(s)	179, 618
Ama87I	CYCGRG	1 cut(s)	281
AoxI	GGCC	5 cut(s)	162, 330, 458, 504, 594
ApeKI	GCWGC	3 cut(s)	308, 388, 443
ApoI	RAATTY	1 cut(s)	650
Asp700I	GAANNNNTTC	1 cut(s)	176
Asp718I	GGTACC	1 cut(s)	58
AspLEI	GCGC	2 cut(s)	47, 313
AspS9I	GGNCC	1 cut(s)	162
AsuC2I	CCSGG	2 cut(s)	229, 398
AvaI	CYCGRG	1 cut(s)	281
BanI	GGYRCC	3 cut(s)	44, 58, 192
BanII	GRGCYC	3 cut(s)	132, 258, 319
BbsI	GAAGAC	1 cut(s)	272
Bbv12I	GWGCWC	3 cut(s)	97, 132, 319
BbvCI	CCTCAGC	1 cut(s)	447
BbvI	GCAGC	3 cut(s)	320, 375, 430
BccI	CCATC	1 cut(s)	341
BciT130I	CCWGG	2 cut(s)	271, 576
BciVI	GTATCC	1 cut(s)	115
BcnI	CCSGG	2 cut(s)	229, 398
BcoDI	GTCTC	2 cut(s)	179, 618
BfoI	RGCGCY	1 cut(s)	48
BfuAI	ACCTGC	1 cut(s)	472
BfuI	GTATCC	1 cut(s)	115
BglI	GCCNNNNNGGC	1 cut(s)	305
BisI	GCNGC	6 cut(s)	309, 330, 386, 389, 444, 507
BlsI	GCNGC	6 cut(s)	310, 331, 387, 390, 445, 508
Bme1390I	CCNGG	4 cut(s)	229, 271, 398, 576
BmeT110I	CYCGRG	1 cut(s)	281
BmgBI	CACGTC	3 cut(s)	325, 646, 664
BmgT120I	GGNCC	1 cut(s)	162
BmiI	GGNNCC	4 cut(s)	46, 60, 194, 255
BmrFI	CCNGG	4 cut(s)	229, 271, 398, 576
BmsI	GCATC	3 cut(s)	536, 561, 594
BpiI	GAAGAC	1 cut(s)	272
BpmI	CTGGAG	1 cut(s)	510
Bpu10I	CCTNAGC	1 cut(s)	447
BpuMI	CCSGG	2 cut(s)	229, 398
BsaHI	GRCGYC	2 cut(s)	45, 140
BsaJI	CCNNGG	5 cut(s)	54, 205, 414, 438, 630
BsaWI	WCCGGW	1 cut(s)	61
Bsc4I	CCNNNNNNNGG	5 cut(s)	159, 234, 276, 384, 470
Bse118I	RCCGGY	1 cut(s)	164
BseBI	CCWGG	2 cut(s)	271, 576
BseDI	CCNNGG	5 cut(s)	54, 205, 414, 438, 630
BseGI	GGATG	5 cut(s)	10, 556, 576, 609, 640
BseLI	CCNNNNNNNGG	5 cut(s)	159, 234, 276, 384, 470
BseMII	CTCAG	2 cut(s)	355, 438
BseRI	GAGGAG	4 cut(s)	40, 140, 569, 572
BseXI	GCAGC	3 cut(s)	320, 375, 430
Bsh1236I	CGCG	4 cut(s)	207, 313, 380, 509
Bsh1285I	CGRYCG	1 cut(s)	169
BshFI	GGCC	5 cut(s)	164, 332, 460, 506, 596
BshNI	GGYRCC	3 cut(s)	44, 58, 192
BsiEI	CGRYCG	1 cut(s)	169
BsiHKAI	GWGCWC	3 cut(s)	97, 132, 319
BsiHKCI	CYCGRG	1 cut(s)	281
BsiSI	CCGG	4 cut(s)	62, 165, 228, 398
BslFI	GGGAC	2 cut(s)	298, 380
BslI	CCNNNNNNNGG	5 cut(s)	159, 234, 276, 384, 470
BsmAI	GTCTC	2 cut(s)	179, 618
BsmFI	GGGAC	2 cut(s)	298, 380
BsnI	GGCC	5 cut(s)	164, 332, 460, 506, 596
BsoBI	CYCGRG	1 cut(s)	281
Bsp1286I	GDGCHC	4 cut(s)	97, 132, 258, 319
BspANI	GGCC	5 cut(s)	164, 332, 460, 506, 596
BspCNI	CTCAG	2 cut(s)	354, 439
BspFNI	CGCG	4 cut(s)	207, 313, 380, 509
BspHI	TCATGA	1 cut(s)	319
BspLI	GGNNCC	4 cut(s)	46, 60, 194, 255
BspMI	ACCTGC	1 cut(s)	472
BspT107I	GGYRCC	3 cut(s)	44, 58, 192
BsrFI	RCCGGY	1 cut(s)	164
BssAI	RCCGGY	1 cut(s)	164
BssECI	CCNNGG	5 cut(s)	54, 205, 414, 438, 630
BssNI	GRCGYC	2 cut(s)	45, 140
BssT1I	CCWWGG	1 cut(s)	414
Bst2UI	CCWGG	2 cut(s)	271, 576
BstACI	GRCGYC	2 cut(s)	45, 140
BstC8I	GCNNGC	5 cut(s)	97, 138, 162, 315, 358
BstDEI	CTNAG	2 cut(s)	341, 447
BstDSI	CCRYGG	1 cut(s)	205
BstF5I	GGATG	5 cut(s)	10, 556, 576, 609, 640
BstFNI	CGCG	4 cut(s)	207, 313, 380, 509
BstH2I	RGCGCY	1 cut(s)	48
BstHHI	GCGC	2 cut(s)	47, 313
BstMAI	GTCTC	2 cut(s)	179, 618
BstMCI	CGRYCG	1 cut(s)	169
BstMWI	GCNNNNNNNGC	8 cut(s)	96, 305, 314, 377, 440, 449, 506, 593
BstNI	CCWGG	2 cut(s)	271, 576
BstSCI	CCNGG	4 cut(s)	227, 269, 396, 574
BstUI	CGCG	4 cut(s)	207, 313, 380, 509
BstV1I	GCAGC	3 cut(s)	320, 375, 430
BstV2I	GAAGAC	1 cut(s)	272
BsuI	GTATCC	1 cut(s)	115
BsuRI	GGCC	5 cut(s)	164, 332, 460, 506, 596
BtgI	CCRYGG	1 cut(s)	205
BtrI	CACGTC	3 cut(s)	325, 646, 664
BtsCI	GGATG	5 cut(s)	10, 556, 576, 609, 640
BtsI	GCAGTG	1 cut(s)	97
BtsIMutI	CAGTG	1 cut(s)	97
BveI	ACCTGC	1 cut(s)	472
Cac8I	GCNNGC	5 cut(s)	97, 138, 162, 315, 358
CciI	TCATGA	1 cut(s)	319
CfoI	GCGC	2 cut(s)	47, 313
Cfr10I	RCCGGY	1 cut(s)	164
Cfr13I	GGNCC	1 cut(s)	162
Cfr42I	CCGCGG	1 cut(s)	208
CseI	GACGC	2 cut(s)	129, 498
Csp6I	GTAC	2 cut(s)	59, 202
CviAII	CATG	1 cut(s)	320
CviQI	GTAC	2 cut(s)	59, 202
DdeI	CTNAG	2 cut(s)	341, 447
DinI	GGCGCC	1 cut(s)	46
DraIII	CACNNNGTG	1 cut(s)	199
EaeI	YGGCCR	4 cut(s)	330, 458, 504, 594
Ecl136II	GAGCTC	2 cut(s)	130, 317
Eco130I	CCWWGG	1 cut(s)	414
Eco24I	GRGCYC	3 cut(s)	132, 258, 319
Eco53kI	GAGCTC	2 cut(s)	130, 317
Eco57I	CTGAAG	1 cut(s)	387
Eco88I	CYCGRG	1 cut(s)	281
EcoICRI	GAGCTC	2 cut(s)	130, 317
EcoRII	CCWGG	2 cut(s)	269, 574
EcoT14I	CCWWGG	1 cut(s)	414
EcoT38I	GRGCYC	3 cut(s)	132, 258, 319
EgeI	GGCGCC	1 cut(s)	46
EheI	GGCGCC	1 cut(s)	46
ErhI	CCWWGG	1 cut(s)	414
FaeI	CATG	1 cut(s)	323
FaiI	YATR	6 cut(s)	321, 546, 548, 593, 657, 673
FaqI	GGGAC	2 cut(s)	298, 380
FatI	CATG	1 cut(s)	319
FauI	CCCGC	2 cut(s)	153, 243
FblI	GTMKAC	1 cut(s)	27
Fnu4HI	GCNGC	6 cut(s)	309, 330, 386, 389, 444, 507
FokI	GGATG	5 cut(s)	17, 563, 583, 616, 647
FriOI	GRGCYC	3 cut(s)	132, 258, 319
Fsp4HI	GCNGC	6 cut(s)	309, 330, 386, 389, 444, 507
GlaI	GCGC	2 cut(s)	46, 312
GluI	GCNGC	6 cut(s)	309, 330, 386, 389, 444, 507
GsuI	CTGGAG	1 cut(s)	510
HaeII	RGCGCY	1 cut(s)	48
HaeIII	GGCC	5 cut(s)	164, 332, 460, 506, 596
HapII	CCGG	4 cut(s)	62, 165, 228, 398
HgaI	GACGC	2 cut(s)	129, 498
HhaI	GCGC	2 cut(s)	47, 313
Hin1I	GRCGYC	2 cut(s)	45, 140
Hin1II	CATG	1 cut(s)	323
Hin6I	GCGC	2 cut(s)	45, 311
HinP1I	GCGC	2 cut(s)	45, 311
HincII	GTYRAC	1 cut(s)	28
HindII	GTYRAC	1 cut(s)	28
HinfI	GANTC	4 cut(s)	65, 187, 374, 579
HpaII	CCGG	4 cut(s)	62, 165, 228, 398
Hpy166II	GTNNAC	4 cut(s)	28, 112, 144, 202
Hpy188I	TCNGA	8 cut(s)	55, 82, 121, 171, 344, 439, 514, 532
Hpy188III	TCNNGA	4 cut(s)	214, 283, 320, 489
Hpy8I	GTNNAC	4 cut(s)	28, 112, 144, 202
Hpy99I	CGWCG	1 cut(s)	29
HpyAV	CCTTC	2 cut(s)	213, 593
HpyCH4IV	ACGT	4 cut(s)	24, 324, 645, 663
HpyF10VI	GCNNNNNNNGC	8 cut(s)	96, 305, 314, 377, 440, 449, 506, 593
HpyF3I	CTNAG	2 cut(s)	341, 447
HpySE526I	ACGT	4 cut(s)	24, 324, 645, 663
Hsp92I	GRCGYC	2 cut(s)	45, 140
Hsp92II	CATG	1 cut(s)	323
HspAI	GCGC	2 cut(s)	45, 311
KasI	GGCGCC	1 cut(s)	44
KpnI	GGTACC	1 cut(s)	62
KspI	CCGCGG	1 cut(s)	208
LmnI	GCTCC	4 cut(s)	127, 135, 253, 491
Lsp1109I	GCAGC	3 cut(s)	320, 375, 430
LweI	GCATC	3 cut(s)	536, 561, 594
MaeII	ACGT	4 cut(s)	24, 324, 645, 663
MboII	GAAGA	3 cut(s)	60, 184, 277
MhlI	GDGCHC	4 cut(s)	97, 132, 258, 319
MluCI	AATT	1 cut(s)	650
Mly113I	GGCGCC	1 cut(s)	45
MlyI	GAGTC	3 cut(s)	181, 368, 573
MmeI	TCCRAC	2 cut(s)	105, 149
MroXI	GAANNNNTTC	1 cut(s)	176
MseI	TTAA	1 cut(s)	688
MspA1I	CMGCKG	1 cut(s)	207
MspI	CCGG	4 cut(s)	62, 165, 228, 398
MspR9I	CCNGG	4 cut(s)	229, 271, 398, 576
MvaI	CCWGG	2 cut(s)	271, 576
MvnI	CGCG	4 cut(s)	207, 313, 380, 509
MwoI	GCNNNNNNNGC	8 cut(s)	96, 305, 314, 377, 440, 449, 506, 593
NarI	GGCGCC	1 cut(s)	45
NciI	CCSGG	2 cut(s)	229, 398
NlaIII	CATG	1 cut(s)	323
NlaIV	GGNNCC	4 cut(s)	46, 60, 194, 255
NmeAIII	GCCGAG	1 cut(s)	169
PagI	TCATGA	1 cut(s)	319
PaqCI	CACCTGC	1 cut(s)	472
PdmI	GAANNNNTTC	1 cut(s)	176
PfeI	GAWTC	1 cut(s)	65
PflMI	CCANNNNNTGG	1 cut(s)	276
PfoI	TCCNGGA	1 cut(s)	227
PkrI	GCNGC	6 cut(s)	310, 331, 387, 390, 445, 508
PleI	GAGTC	3 cut(s)	181, 368, 573
PluTI	GGCGCC	1 cut(s)	48
PpsI	GAGTC	3 cut(s)	181, 368, 573
Psp124BI	GAGCTC	2 cut(s)	132, 319
Psp6I	CCWGG	2 cut(s)	269, 574
PspGI	CCWGG	2 cut(s)	269, 574
PspN4I	GGNNCC	4 cut(s)	46, 60, 194, 255
PspPI	GGNCC	1 cut(s)	162
RsaI	GTAC	2 cut(s)	60, 203
RsaNI	GTAC	2 cut(s)	59, 202
SacI	GAGCTC	2 cut(s)	132, 319
SacII	CCGCGG	1 cut(s)	208
SalI	GTCGAC	1 cut(s)	26
SaqAI	TTAA	1 cut(s)	688
SatI	GCNGC	6 cut(s)	309, 330, 386, 389, 444, 507
Sau96I	GGNCC	1 cut(s)	162
SchI	GAGTC	3 cut(s)	181, 368, 573
ScrFI	CCNGG	4 cut(s)	229, 271, 398, 576
SduI	GDGCHC	4 cut(s)	97, 132, 258, 319
SfaNI	GCATC	3 cut(s)	536, 561, 594
SfoI	GGCGCC	1 cut(s)	46
Sfr303I	CCGCGG	1 cut(s)	208
SgrBI	CCGCGG	1 cut(s)	208
Sse9I	AATT	1 cut(s)	650
SspDI	GGCGCC	1 cut(s)	44
SstI	GAGCTC	2 cut(s)	132, 319
StyD4I	CCNGG	4 cut(s)	227, 269, 396, 574
StyI	CCWWGG	1 cut(s)	414
TaiI	ACGT	4 cut(s)	27, 327, 648, 666
TaqI	TCGA	2 cut(s)	27, 683
TaqII	GACCGA	1 cut(s)	339
TasI	AATT	1 cut(s)	650
TauI	GCSGC	3 cut(s)	332, 388, 509
TfiI	GAWTC	1 cut(s)	65
Tru1I	TTAA	1 cut(s)	688
Tru9I	TTAA	1 cut(s)	688
TscAI	CASTG	1 cut(s)	97
TseI	GCWGC	3 cut(s)	308, 388, 443
TspGWI	ACGGA	1 cut(s)	97
TspRI	CASTG	1 cut(s)	97
Van91I	CCANNNNNTGG	1 cut(s)	276
XapI	RAATTY	1 cut(s)	650
XcmI	CCANNNNNNNNNTGG	1 cut(s)	301
XmiI	GTMKAC	1 cut(s)	27
XmnI	GAANNNNTTC	1 cut(s)	176

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.