AT4G26370

antitermination NusB domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0010441
Physical Location & Seq
Reverse (-)
13333652 .. 13336231
2580 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G26370.3

Sequence Viewer

Length: 906 bp
ATGGAGGGAACCTTCTCGCCGCTTTGCTTACGTTCTTCTTCGAACCTCTGTTACTTCTCCAGTAATGTTTCACCAGATTCTCACCGTTCTATAGGATTTACATTGGTTGATTCGCTCCGGCCAACGAACTTGGTTTCCCTGCGAACGGGAAATAAACGTTCGTCATCGTCTTCACTACGGCTATTTCTCTCTCCGACTAGAAGCGCTCTCCGTACGCCGACTATTTCCGCGGAGGAGGTGAAAGATGTCCCGATGCCGAAGATTGATAAGAGCGGCCGATTAAGCAGTCCTCGAGCCGCACGCGAGCTCGCTCTTGTAATACTTTATGCCGCATGCTTAGAAGGCTCTGACCCAATTCGTCTCTTTGAGAAGAGAATAAACGCAAGAAGAGAGCCTGGATACGAGTTTGACAAGAGTTCTTTGTTGGAATACAACCACATGAGCTTTGGAGGACCCCCAGTTAAAACAGAAACAAAAGAAGAAGAAGATGAGCTTGTGCGCCATGATGAAAAAGAATCGAAAATCGAAGCCGAAGTGCTTTCAGCTCCCCCAAAGCTGGTGTACAGCAAACTTGTTTTACGGTTTGCAAAGAAACTCTTGGCTGCGGTAGTTGATAAATGGGATAGTCATGTCGTTATCATCGAGAAAATTTCCCCGCCAGATTGGAAGAGTGCACCAGCTGGAAGAATATTGGAGTTTTCGATTCTTCACTTGGCAATGTCTGAAGTGGCAGTCCTTGAAACCCGACACCCGATTGTCATTAACGAGGCTGTTGATCTTGCAAAACGGTTCTGCGATGGATCAGCACCACGCATAATCAACGGATGCCTAAGGACATTTGTCAAGGATAGAGCAACAACATCAACACCTCAAGCTTTAGAATTGAAGCAAGAAGTGTCGGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NusB

Protein Analysis

301

Amino Acids

33.46

Weight (kDa)

8.73

Isoelectric Point (pI)

63.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010441)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G26370 AT4G26370 AT4G26370
fragaria_vesca FvH4_3g45910 FvH4_3g45910 FvH4_3g45910
malus_domestica MD11G1001800.v1.1
prunus_persica Prupe.6G001800_v2.0.a1
pyrus_communis pycom11g00180
rosa_chinensis RchiOBHm_Chr5g0084001
rosa_laevigata RLG00000037071
rosa_multiflora Rmu_sc0001137.1_g000001 Rmu_ssc0000372.1_g000077
rosa_roxburghii Rroxscaffold_1G00000650
rosa_rugosa Rorug05G0488200 Rorug05G0488300
rosa_samantha Rh5AG540900 Rh5BG566200 Rh5CG588200 Rh5DG574500
rosa_wichuraiana Rw5G050300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 273
AccII CGCG 2 cut(s) 230, 303
AciI CCGC 8 cut(s) 20, 228, 230, 273, 297, 330, 605, 656
AclI AACGTT 1 cut(s) 157
AclWI GGATC 1 cut(s) 808
AcoI YGGCCR 2 cut(s) 119, 274
AcsI RAATTY 1 cut(s) 648
AcuI CTGAAG 1 cut(s) 744
AfaI GTAC 2 cut(s) 214, 563
AfeI AGCGCT 1 cut(s) 205
AfiI CCNNNNNNNGG 2 cut(s) 145, 556
AgsI TTSAA 2 cut(s) 740, 886
AjnI CCWGG 1 cut(s) 394
AloI GAACNNNNNNTCC 2 cut(s) 119, 151
AluBI AGCT 7 cut(s) 307, 444, 493, 545, 556, 680, 875
AluI AGCT 7 cut(s) 307, 444, 493, 545, 556, 680, 875
Alw21I GWGCWC 2 cut(s) 309, 676
Alw26I GTCTC 1 cut(s) 365
Alw44I GTGCAC 1 cut(s) 672
AlwI GGATC 1 cut(s) 808
Ama87I CYCGRG 1 cut(s) 291
Aor51HI AGCGCT 1 cut(s) 205
AoxI GGCC 2 cut(s) 119, 274
ApaLI GTGCAC 1 cut(s) 672
ApeKI GCWGC 1 cut(s) 602
ApoI RAATTY 1 cut(s) 648
AspLEI GCGC 2 cut(s) 206, 501
AspS9I GGNCC 1 cut(s) 452
AsuHPI GGTGA 3 cut(s) 63, 74, 250
AsuII TTCGAA 1 cut(s) 41
AvaI CYCGRG 1 cut(s) 291
AvaII GGWCC 1 cut(s) 452
AxyI CCTNAGG 1 cut(s) 830
BaeGI GKGCMC 1 cut(s) 676
BanII GRGCYC 1 cut(s) 309
BbsI GAAGAC 1 cut(s) 162
Bbv12I GWGCWC 2 cut(s) 309, 676
BbvI GCAGC 1 cut(s) 589
BccI CCATC 1 cut(s) 791
BceAI ACGGC 1 cut(s) 194
BciT130I CCWGG 1 cut(s) 396
BciVI GTATCC 1 cut(s) 392
BcoDI GTCTC 1 cut(s) 365
BfaI CTAG 1 cut(s) 198
BfmI CTRYAG 1 cut(s) 90
BfoI RGCGCY 1 cut(s) 207
BfuI GTATCC 1 cut(s) 392
BisI GCNGC 5 cut(s) 20, 274, 297, 330, 603
BlsI GCNGC 5 cut(s) 21, 275, 298, 331, 604
Bme1390I CCNGG 1 cut(s) 396
Bme18I GGWCC 1 cut(s) 452
BmeT110I CYCGRG 1 cut(s) 291
BmgT120I GGNCC 1 cut(s) 452
BmiI GGNNCC 2 cut(s) 10, 454
BmrFI CCNGG 1 cut(s) 396
BmrI ACTGGG 1 cut(s) 452
BmsI GCATC 2 cut(s) 243, 815
BmuI ACTGGG 1 cut(s) 452
BoxI GACNNNNGTC 1 cut(s) 839
BpiI GAAGAC 1 cut(s) 162
BpmI CTGGAG 1 cut(s) 43
Bpu14I TTCGAA 1 cut(s) 41
BpuEI CTTGAG 1 cut(s) 855
BsaJI CCNNGG 1 cut(s) 228
Bsc4I CCNNNNNNNGG 2 cut(s) 145, 556
Bse1I ACTGG 2 cut(s) 60, 458
Bse21I CCTNAGG 1 cut(s) 830
Bse3DI GCAATG 1 cut(s) 723
BseBI CCWGG 1 cut(s) 396
BseDI CCNNGG 1 cut(s) 228
BseGI GGATG 1 cut(s) 830
BseLI CCNNNNNNNGG 2 cut(s) 145, 556
BseMI GCAATG 1 cut(s) 723
BseNI ACTGG 2 cut(s) 60, 458
BseRI GAGGAG 1 cut(s) 248
BseSI GKGCMC 1 cut(s) 676
BseX3I CGGCCG 1 cut(s) 274
BseXI GCAGC 1 cut(s) 589
Bsh1236I CGCG 2 cut(s) 230, 303
Bsh1285I CGRYCG 1 cut(s) 277
BshFI GGCC 2 cut(s) 121, 276
BsiEI CGRYCG 1 cut(s) 277
BsiHKAI GWGCWC 2 cut(s) 309, 676
BsiHKCI CYCGRG 1 cut(s) 291
BsiSI CCGG 1 cut(s) 118
BsiWI CGTACG 1 cut(s) 212
BslFI GGGAC 1 cut(s) 233
BslI CCNNNNNNNGG 2 cut(s) 145, 556
BsmAI GTCTC 1 cut(s) 365
BsmBI CGTCTC 1 cut(s) 365
BsmFI GGGAC 1 cut(s) 233
BsnI GGCC 2 cut(s) 121, 276
BsoBI CYCGRG 1 cut(s) 291
Bsp119I TTCGAA 1 cut(s) 41
Bsp1286I GDGCHC 2 cut(s) 309, 676
Bsp1407I TGTACA 1 cut(s) 561
Bsp143I GATC 2 cut(s) 775, 800
BspACI CCGC 8 cut(s) 20, 228, 230, 273, 297, 330, 605, 656
BspANI GGCC 2 cut(s) 121, 276
BspFNI CGCG 2 cut(s) 230, 303
BspLI GGNNCC 2 cut(s) 10, 454
BspPI GGATC 1 cut(s) 808
BspT104I TTCGAA 1 cut(s) 41
BsrBI CCGCTC 1 cut(s) 273
BsrDI GCAATG 1 cut(s) 723
BsrGI TGTACA 1 cut(s) 561
BsrI ACTGG 2 cut(s) 60, 458
BssECI CCNNGG 1 cut(s) 228
BssMI GATC 2 cut(s) 775, 800
Bst2UI CCWGG 1 cut(s) 396
Bst4CI ACNGT 3 cut(s) 86, 582, 789
Bst6I CTCTTC 3 cut(s) 365, 382, 662
BstAUI TGTACA 1 cut(s) 561
BstBI TTCGAA 1 cut(s) 41
BstC8I GCNNGC 4 cut(s) 301, 305, 309, 334
BstDEI CTNAG 2 cut(s) 337, 830
BstDSI CCRYGG 1 cut(s) 228
BstF5I GGATG 1 cut(s) 830
BstFNI CGCG 2 cut(s) 230, 303
BstH2I RGCGCY 1 cut(s) 207
BstHHI GCGC 2 cut(s) 206, 501
BstKTI GATC 2 cut(s) 778, 803
BstMAI GTCTC 1 cut(s) 365
BstMBI GATC 2 cut(s) 775, 800
BstMCI CGRYCG 1 cut(s) 277
BstMWI GCNNNNNNNGC 2 cut(s) 282, 342
BstNI CCWGG 1 cut(s) 396
BstNSI RCATGY 1 cut(s) 336
BstPAI GACNNNNGTC 1 cut(s) 839
BstSCI CCNGG 1 cut(s) 394
BstSFI CTRYAG 1 cut(s) 90
BstSLI GKGCMC 1 cut(s) 676
BstUI CGCG 2 cut(s) 230, 303
BstV1I GCAGC 1 cut(s) 589
BstV2I GAAGAC 1 cut(s) 162
BstZI CGGCCG 1 cut(s) 274
Bsu36I CCTNAGG 1 cut(s) 830
BsuI GTATCC 1 cut(s) 392
BsuRI GGCC 2 cut(s) 121, 276
BtgI CCRYGG 1 cut(s) 228
BtgZI GCGATG 1 cut(s) 810
BtsCI GGATG 1 cut(s) 830
Cac8I GCNNGC 4 cut(s) 301, 305, 309, 334
CfoI GCGC 2 cut(s) 206, 501
Cfr13I GGNCC 1 cut(s) 452
Cfr42I CCGCGG 1 cut(s) 231
Csp6I GTAC 2 cut(s) 213, 562
CviAII CATG 4 cut(s) 333, 439, 503, 629
CviQI GTAC 2 cut(s) 213, 562
DdeI CTNAG 2 cut(s) 337, 830
DpnI GATC 2 cut(s) 777, 802
DpnII GATC 2 cut(s) 775, 800
EaeI YGGCCR 2 cut(s) 119, 274
EagI CGGCCG 1 cut(s) 274
Eam1104I CTCTTC 3 cut(s) 365, 382, 662
EarI CTCTTC 3 cut(s) 365, 382, 662
Ecl136II GAGCTC 1 cut(s) 307
EclXI CGGCCG 1 cut(s) 274
Eco24I GRGCYC 1 cut(s) 309
Eco47I GGWCC 1 cut(s) 452
Eco47III AGCGCT 1 cut(s) 205
Eco52I CGGCCG 1 cut(s) 274
Eco53kI GAGCTC 1 cut(s) 307
Eco57I CTGAAG 1 cut(s) 744
Eco81I CCTNAGG 1 cut(s) 830
Eco88I CYCGRG 1 cut(s) 291
EcoICRI GAGCTC 1 cut(s) 307
EcoO109I RGGNCCY 1 cut(s) 452
EcoRII CCWGG 1 cut(s) 394
EcoT38I GRGCYC 1 cut(s) 309
Esp3I CGTCTC 1 cut(s) 365
FaeI CATG 4 cut(s) 336, 442, 506, 632
FaiI YATR 7 cut(s) 92, 327, 334, 440, 504, 630, 815
FalI AAGNNNNNCTT 4 cut(s) 477, 509, 581, 613
FaqI GGGAC 1 cut(s) 233
FatI CATG 4 cut(s) 332, 438, 502, 628
FauI CCCGC 1 cut(s) 663
Fnu4HI GCNGC 5 cut(s) 20, 274, 297, 330, 603
FokI GGATG 1 cut(s) 837
FriOI GRGCYC 1 cut(s) 309
Fsp4HI GCNGC 5 cut(s) 20, 274, 297, 330, 603
FspBI CTAG 1 cut(s) 198
GlaI GCGC 2 cut(s) 205, 500
GluI GCNGC 5 cut(s) 20, 274, 297, 330, 603
GsuI CTGGAG 1 cut(s) 43
HaeII RGCGCY 1 cut(s) 207
HaeIII GGCC 2 cut(s) 121, 276
HapII CCGG 1 cut(s) 118
HhaI GCGC 2 cut(s) 206, 501
Hin1II CATG 4 cut(s) 336, 442, 506, 632
Hin6I GCGC 2 cut(s) 204, 499
HinP1I GCGC 2 cut(s) 204, 499
HindIII AAGCTT 1 cut(s) 873
HinfI GANTC 4 cut(s) 77, 110, 515, 703
HpaII CCGG 1 cut(s) 118
HphI GGTGA 3 cut(s) 63, 74, 250
Hpy166II GTNNAC 2 cut(s) 562, 674
Hpy188I TCNGA 3 cut(s) 195, 349, 724
Hpy188III TCNNGA 2 cut(s) 250, 643
Hpy8I GTNNAC 2 cut(s) 562, 674
HpyAV CCTTC 2 cut(s) 22, 335
HpyCH4III ACNGT 3 cut(s) 86, 582, 789
HpyCH4IV ACGT 2 cut(s) 31, 157
HpyCH4V TGCA 3 cut(s) 587, 674, 782
HpyF10VI GCNNNNNNNGC 2 cut(s) 282, 342
HpyF3I CTNAG 2 cut(s) 337, 830
HpySE526I ACGT 2 cut(s) 31, 157
Hsp92II CATG 4 cut(s) 336, 442, 506, 632
HspAI GCGC 2 cut(s) 204, 499
KspI CCGCGG 1 cut(s) 231
Kzo9I GATC 2 cut(s) 775, 800
LmnI GCTCC 2 cut(s) 120, 550
Lsp1109I GCAGC 1 cut(s) 589
LweI GCATC 2 cut(s) 243, 815
MaeI CTAG 1 cut(s) 198
MaeII ACGT 2 cut(s) 31, 157
MaeIII GTNAC 1 cut(s) 50
MalI GATC 2 cut(s) 777, 802
MbiI CCGCTC 1 cut(s) 273
MboI GATC 2 cut(s) 775, 800
MhlI GDGCHC 2 cut(s) 309, 676
MluCI AATT 3 cut(s) 354, 648, 881
MmeI TCCRAC 2 cut(s) 218, 405
MnlI CCTC 7 cut(s) 56, 226, 229, 300, 443, 760, 879
MseI TTAA 4 cut(s) 281, 462, 762, 904
MspA1I CMGCKG 2 cut(s) 230, 680
MspI CCGG 1 cut(s) 118
MspR9I CCNGG 1 cut(s) 396
MvaI CCWGG 1 cut(s) 396
MvnI CGCG 2 cut(s) 230, 303
MwoI GCNNNNNNNGC 2 cut(s) 282, 342
NdeII GATC 2 cut(s) 775, 800
NlaIII CATG 4 cut(s) 336, 442, 506, 632
NlaIV GGNNCC 2 cut(s) 10, 454
NspI RCATGY 1 cut(s) 336
NspV TTCGAA 1 cut(s) 41
PaeI GCATGC 1 cut(s) 336
PaeR7I CTCGAG 1 cut(s) 291
PcsI WCGNNNNNNNCGW 1 cut(s) 639
PfeI GAWTC 4 cut(s) 77, 110, 515, 703
Pfl23II CGTACG 1 cut(s) 212
PkrI GCNGC 5 cut(s) 21, 275, 298, 331, 604
PpuMI RGGWCCY 1 cut(s) 452
PshAI GACNNNNGTC 1 cut(s) 839
Psp124BI GAGCTC 1 cut(s) 309
Psp1406I AACGTT 1 cut(s) 157
Psp5II RGGWCCY 1 cut(s) 452
Psp6I CCWGG 1 cut(s) 394
PspGI CCWGG 1 cut(s) 394
PspLI CGTACG 1 cut(s) 212
PspN4I GGNNCC 2 cut(s) 10, 454
PspPI GGNCC 1 cut(s) 452
PspPPI RGGWCCY 1 cut(s) 452
PspXI VCTCGAGB 1 cut(s) 291
PsrI GAACNNNNNNTAC 2 cut(s) 35, 67
PvuII CAGCTG 1 cut(s) 680
RsaI GTAC 2 cut(s) 214, 563
RsaNI GTAC 2 cut(s) 213, 562
SacI GAGCTC 1 cut(s) 309
SacII CCGCGG 1 cut(s) 231
SaqAI TTAA 4 cut(s) 281, 462, 762, 904
SatI GCNGC 5 cut(s) 20, 274, 297, 330, 603
Sau3AI GATC 2 cut(s) 775, 800
Sau96I GGNCC 1 cut(s) 452
ScrFI CCNGG 1 cut(s) 396
SduI GDGCHC 2 cut(s) 309, 676
SfaNI GCATC 2 cut(s) 243, 815
SfcI CTRYAG 1 cut(s) 90
Sfr274I CTCGAG 1 cut(s) 291
Sfr303I CCGCGG 1 cut(s) 231
SfuI TTCGAA 1 cut(s) 41
SgrBI CCGCGG 1 cut(s) 231
SinI GGWCC 1 cut(s) 452
SlaI CTCGAG 1 cut(s) 291
SmlI CTYRAG 2 cut(s) 291, 870
SmoI CTYRAG 2 cut(s) 291, 870
SphI GCATGC 1 cut(s) 336
Sse9I AATT 3 cut(s) 354, 648, 881
SsiI CCGC 8 cut(s) 20, 228, 230, 273, 297, 330, 605, 656
SspI AATATT 1 cut(s) 690
SspMI CTAG 1 cut(s) 198
SstI GAGCTC 1 cut(s) 309
StyD4I CCNGG 1 cut(s) 394
TaaI ACNGT 3 cut(s) 86, 582, 789
TaiI ACGT 2 cut(s) 34, 160
TaqI TCGA 6 cut(s) 41, 292, 518, 525, 642, 701
TasI AATT 3 cut(s) 354, 648, 881
TatI WGTACW 1 cut(s) 561
TauI GCSGC 4 cut(s) 22, 276, 299, 332
TfiI GAWTC 4 cut(s) 77, 110, 515, 703
Tru1I TTAA 4 cut(s) 281, 462, 762, 904
Tru9I TTAA 4 cut(s) 281, 462, 762, 904
TseI GCWGC 1 cut(s) 602
TspDTI ATGAA 1 cut(s) 522
TspGWI ACGGA 2 cut(s) 200, 837
VneI GTGCAC 1 cut(s) 672
VpaK11BI GGWCC 1 cut(s) 452
XapI RAATTY 1 cut(s) 648
XceI RCATGY 1 cut(s) 336
XcmI CCANNNNNNNNNTGG 1 cut(s) 443
XhoI CTCGAG 1 cut(s) 291
XspI CTAG 1 cut(s) 198
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.