FvH4_3g45910

NusB family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0010441
Physical Location & Seq
Reverse (-)
38108559 .. 38111972
3414 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g45910.t3

Sequence Viewer

Length: 876 bp
ATGGAGGGAAGCTCGCTCCTCAGTCTCAGCTGCTCTTCTCCCTCTTACTCCTCTCTAAGCTTCACTCTCTCCCACTCCTCCTCTTCTTCTTGTTTGCTCTTCGGAAAGTCCCATCTCGTGAGTTTAATCCCAAGACCCTTCACTGTCCGAACCTCTCTCCGCACTTCCACCTTCACCGTCGATGAAGCTCTCGAAAAGCCCATCAACTCCGAGTCCAGAGACATGTTGCCCAAGATTGACAAGAGCGGCAGATTTTGCAGCCCCAGAGCCGCCAGGGAGCTCGCTCTGTCCATTGTTTATGCTTCCTGTTTAGAAGGTTCTGACCCAGTACGCTTATTTGAAAAGCGAATGAATATCCGTCGAGAACCCGGGTATGAATTTGACAAGGCTTCATTGTTGGAATATAATCCCATGAGCTTCGGAGGACCTCCTGTCACAGTTCAAACTGTTGAAGAAGCAGATGAGCTCCTGCTAACTGACGAAAAGGAATCAGCAATCGAAGCGGAAGTTCTCGCAGCTCCTCCAAAGTTGGTATACAGCAAACTGATTTTAAGATTTGCACGGAAACTTTTGGTTGCGGTCATGGATAAATGGGACAGTCATGTGCTTGTCATTGACAGAGTCGCCCCTCCAAATTGGAAGGATGAGCCAGGAAGCAGAATCTTGGAGCTTTGCATCCTTCACTTGGCAATGTCAGAAATAACAGTGTTAGGAACACGACACCAGATTGTCATTAATGAGGCTGTAGATCTTGCTAAACGTTTCTGTGATGGGTCAGCCCCCCGCACAATCAATGGTTGTCTCAGAACATTTGTCAATGGCCTTGAAGAAACTGGTTTAACTCCAGCTTTGGGGAAACAGAAAGTGGTCACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NusB

Protein Analysis

292

Amino Acids

32.09

Weight (kDa)

6.26

Isoelectric Point (pI)

49.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010441)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G26370 AT4G26370 AT4G26370
fragaria_vesca FvH4_3g45910 FvH4_3g45910 FvH4_3g45910
malus_domestica MD11G1001800.v1.1
prunus_persica Prupe.6G001800_v2.0.a1
pyrus_communis pycom11g00180
rosa_chinensis RchiOBHm_Chr5g0084001
rosa_laevigata RLG00000037071
rosa_multiflora Rmu_sc0001137.1_g000001 Rmu_ssc0000372.1_g000077
rosa_roxburghii Rroxscaffold_1G00000650
rosa_rugosa Rorug05G0488200 Rorug05G0488300
rosa_samantha Rh5AG540900 Rh5BG566200 Rh5CG588200 Rh5DG574500
rosa_wichuraiana Rw5G050300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 246
AccI GTMKAC 1 cut(s) 534
AciI CCGC 6 cut(s) 160, 246, 270, 503, 578, 784
AclI AACGTT 1 cut(s) 760
AcsI RAATTY 1 cut(s) 377
AfaI GTAC 1 cut(s) 330
AfiI CCNNNNNNNGG 2 cut(s) 685, 851
AflIII ACRYGT 1 cut(s) 222
AgsI TTSAA 4 cut(s) 341, 443, 452, 827
AhdI GACNNNNNGTC 1 cut(s) 431
AjnI CCWGG 2 cut(s) 272, 649
Alw21I GWGCWC 2 cut(s) 282, 468
Alw26I GTCTC 3 cut(s) 29, 213, 806
Ama87I CYCGRG 1 cut(s) 368
AoxI GGCC 1 cut(s) 820
ApeKI GCWGC 3 cut(s) 30, 258, 515
ApoI RAATTY 1 cut(s) 377
AseI ATTAAT 1 cut(s) 735
AspS9I GGNCC 1 cut(s) 425
AsuC2I CCSGG 2 cut(s) 369, 370
AsuHPI GGTGA 1 cut(s) 166
AvaI CYCGRG 1 cut(s) 368
AvaII GGWCC 1 cut(s) 425
BanII GRGCYC 2 cut(s) 282, 468
BauI CACGAG 1 cut(s) 116
Bbv12I GWGCWC 2 cut(s) 282, 468
BbvI GCAGC 3 cut(s) 17, 270, 527
BccI CCATC 3 cut(s) 120, 209, 764
BciT130I CCWGG 2 cut(s) 274, 651
BcnI CCSGG 2 cut(s) 369, 370
BcoDI GTCTC 3 cut(s) 29, 213, 806
BfmI CTRYAG 1 cut(s) 744
BglII AGATCT 1 cut(s) 748
BisI GCNGC 5 cut(s) 31, 247, 259, 270, 516
BlsI GCNGC 5 cut(s) 32, 248, 260, 271, 517
Bme1390I CCNGG 4 cut(s) 274, 369, 370, 651
Bme18I GGWCC 1 cut(s) 425
BmeRI GACNNNNNGTC 1 cut(s) 431
BmeT110I CYCGRG 1 cut(s) 368
BmgT120I GGNCC 1 cut(s) 425
BmrFI CCNGG 4 cut(s) 274, 369, 370, 651
BmrI ACTGGG 1 cut(s) 320
BmsI GCATC 1 cut(s) 684
BmuI ACTGGG 1 cut(s) 320
BplI GAGNNNNNCTC 1 cut(s) 28
BpmI CTGGAG 1 cut(s) 828
BpuMI CCSGG 2 cut(s) 369, 370
BsaJI CCNNGG 2 cut(s) 273, 368
Bsc4I CCNNNNNNNGG 2 cut(s) 685, 851
Bse1I ACTGG 2 cut(s) 326, 838
Bse3DI GCAATG 1 cut(s) 696
BseBI CCWGG 2 cut(s) 274, 651
BseDI CCNNGG 2 cut(s) 273, 368
BseGI GGATG 2 cut(s) 649, 675
BseLI CCNNNNNNNGG 2 cut(s) 685, 851
BseMI GCAATG 1 cut(s) 696
BseMII CTCAG 3 cut(s) 34, 40, 817
BseNI ACTGG 2 cut(s) 326, 838
BseRI GAGGAG 5 cut(s) 8, 40, 67, 70, 510
BseXI GCAGC 3 cut(s) 17, 270, 527
BshFI GGCC 1 cut(s) 822
BsiHKAI GWGCWC 2 cut(s) 282, 468
BsiHKCI CYCGRG 1 cut(s) 368
BsiSI CCGG 1 cut(s) 369
BslFI GGGAC 2 cut(s) 94, 608
BslI CCNNNNNNNGG 2 cut(s) 685, 851
BsmAI GTCTC 3 cut(s) 29, 213, 806
BsmFI GGGAC 2 cut(s) 94, 608
BsnI GGCC 1 cut(s) 822
BsoBI CYCGRG 1 cut(s) 368
Bsp1286I GDGCHC 2 cut(s) 282, 468
Bsp143I GATC 1 cut(s) 748
BspACI CCGC 6 cut(s) 160, 246, 270, 503, 578, 784
BspANI GGCC 1 cut(s) 822
BspCNI CTCAG 3 cut(s) 33, 39, 816
BspQI GCTCTTC 2 cut(s) 40, 104
BsrBI CCGCTC 1 cut(s) 246
BsrDI GCAATG 1 cut(s) 696
BsrI ACTGG 2 cut(s) 326, 838
BssECI CCNNGG 2 cut(s) 273, 368
BssMI GATC 1 cut(s) 748
BssNAI GTATAC 1 cut(s) 535
BssSI CACGAG 1 cut(s) 116
Bst1107I GTATAC 1 cut(s) 535
Bst2BI CACGAG 1 cut(s) 116
Bst2UI CCWGG 2 cut(s) 274, 651
Bst4CI ACNGT 6 cut(s) 145, 178, 439, 448, 599, 706
Bst6I CTCTTC 3 cut(s) 40, 88, 104
BstAPI GCANNNNNTGC 1 cut(s) 255
BstC8I GCNNGC 2 cut(s) 14, 282
BstDEI CTNAG 4 cut(s) 20, 26, 56, 803
BstF5I GGATG 2 cut(s) 649, 675
BstKTI GATC 1 cut(s) 751
BstMAI GTCTC 3 cut(s) 29, 213, 806
BstMBI GATC 1 cut(s) 748
BstMWI GCNNNNNNNGC 2 cut(s) 255, 500
BstNI CCWGG 2 cut(s) 274, 651
BstNSI RCATGY 1 cut(s) 226
BstSCI CCNGG 4 cut(s) 272, 367, 368, 649
BstSFI CTRYAG 1 cut(s) 744
BstV1I GCAGC 3 cut(s) 17, 270, 527
BstX2I RGATCY 1 cut(s) 748
BstYI RGATCY 1 cut(s) 748
BstZ17I GTATAC 1 cut(s) 535
BsuRI GGCC 1 cut(s) 822
BtsCI GGATG 2 cut(s) 649, 675
BtsIMutI CAGTG 2 cut(s) 141, 711
Cac8I GCNNGC 2 cut(s) 14, 282
Cfr13I GGNCC 1 cut(s) 425
Cfr9I CCCGGG 1 cut(s) 368
Csp6I GTAC 1 cut(s) 329
CviAII CATG 4 cut(s) 223, 412, 583, 602
CviQI GTAC 1 cut(s) 329
DdeI CTNAG 4 cut(s) 20, 26, 56, 803
DpnI GATC 1 cut(s) 750
DpnII GATC 1 cut(s) 748
DriI GACNNNNNGTC 1 cut(s) 431
Eam1104I CTCTTC 3 cut(s) 40, 88, 104
Eam1105I GACNNNNNGTC 1 cut(s) 431
EarI CTCTTC 3 cut(s) 40, 88, 104
Ecl136II GAGCTC 2 cut(s) 280, 466
Eco24I GRGCYC 2 cut(s) 282, 468
Eco47I GGWCC 1 cut(s) 425
Eco53kI GAGCTC 2 cut(s) 280, 466
Eco88I CYCGRG 1 cut(s) 368
EcoICRI GAGCTC 2 cut(s) 280, 466
EcoO109I RGGNCCY 1 cut(s) 425
EcoRII CCWGG 2 cut(s) 272, 649
EcoT38I GRGCYC 2 cut(s) 282, 468
FaeI CATG 4 cut(s) 226, 415, 586, 605
FaiI YATR 8 cut(s) 224, 300, 375, 405, 413, 535, 584, 603
FaqI GGGAC 2 cut(s) 94, 608
FatI CATG 4 cut(s) 222, 411, 582, 601
FauI CCCGC 1 cut(s) 791
FblI GTMKAC 1 cut(s) 534
Fnu4HI GCNGC 5 cut(s) 31, 247, 259, 270, 516
FokI GGATG 2 cut(s) 656, 662
FriOI GRGCYC 2 cut(s) 282, 468
Fsp4HI GCNGC 5 cut(s) 31, 247, 259, 270, 516
GluI GCNGC 5 cut(s) 31, 247, 259, 270, 516
GsuI CTGGAG 1 cut(s) 828
HaeIII GGCC 1 cut(s) 822
HapII CCGG 1 cut(s) 369
Hin1II CATG 4 cut(s) 226, 415, 586, 605
HindIII AAGCTT 1 cut(s) 58
HinfI GANTC 4 cut(s) 212, 488, 621, 660
HpaII CCGG 1 cut(s) 369
HphI GGTGA 1 cut(s) 166
Hpy166II GTNNAC 1 cut(s) 535
Hpy188I TCNGA 7 cut(s) 104, 149, 211, 322, 422, 697, 806
Hpy188III TCNNGA 4 cut(s) 118, 191, 216, 362
Hpy8I GTNNAC 1 cut(s) 535
Hpy99I CGWCG 2 cut(s) 182, 363
HpyAV CCTTC 5 cut(s) 148, 181, 308, 634, 689
HpyCH4III ACNGT 6 cut(s) 145, 178, 439, 448, 599, 706
HpyCH4IV ACGT 1 cut(s) 760
HpyCH4V TGCA 3 cut(s) 258, 560, 675
HpyF10VI GCNNNNNNNGC 2 cut(s) 255, 500
HpyF3I CTNAG 4 cut(s) 20, 26, 56, 803
HpySE526I ACGT 1 cut(s) 760
Hsp92II CATG 4 cut(s) 226, 415, 586, 605
Kzo9I GATC 1 cut(s) 748
LguI GCTCTTC 2 cut(s) 40, 104
LmnI GCTCC 5 cut(s) 21, 277, 471, 523, 667
Lsp1109I GCAGC 3 cut(s) 17, 270, 527
LweI GCATC 1 cut(s) 684
MaeII ACGT 1 cut(s) 760
MaeIII GTNAC 2 cut(s) 433, 868
MalI GATC 1 cut(s) 750
MbiI CCGCTC 1 cut(s) 246
MboI GATC 1 cut(s) 748
MboII GAAGA 6 cut(s) 27, 75, 78, 91, 464, 839
MflI RGATCY 1 cut(s) 748
MhlI GDGCHC 2 cut(s) 282, 468
MluCI AATT 2 cut(s) 377, 634
MlyI GAGTC 2 cut(s) 221, 630
MmeI TCCRAC 1 cut(s) 378
MseI TTAA 4 cut(s) 125, 551, 735, 839
MspA1I CMGCKG 1 cut(s) 30
MspI CCGG 1 cut(s) 369
MspR9I CCNGG 4 cut(s) 274, 369, 370, 651
MvaI CCWGG 2 cut(s) 274, 651
MwoI GCNNNNNNNGC 2 cut(s) 255, 500
NciI CCSGG 2 cut(s) 369, 370
NdeII GATC 1 cut(s) 748
NlaIII CATG 4 cut(s) 226, 415, 586, 605
NmuCI GTSAC 2 cut(s) 433, 868
NspI RCATGY 1 cut(s) 226
PciI ACATGT 1 cut(s) 222
PciSI GCTCTTC 2 cut(s) 40, 104
PfeI GAWTC 2 cut(s) 488, 660
PflFI GACNNNGTC 1 cut(s) 620
PkrI GCNGC 5 cut(s) 32, 248, 260, 271, 517
PleI GAGTC 2 cut(s) 220, 629
PpsI GAGTC 2 cut(s) 220, 629
PpuMI RGGWCCY 1 cut(s) 425
PscI ACATGT 1 cut(s) 222
PshBI ATTAAT 1 cut(s) 735
Psp124BI GAGCTC 2 cut(s) 282, 468
Psp1406I AACGTT 1 cut(s) 760
Psp5II RGGWCCY 1 cut(s) 425
Psp6I CCWGG 2 cut(s) 272, 649
PspGI CCWGG 2 cut(s) 272, 649
PspPI GGNCC 1 cut(s) 425
PspPPI RGGWCCY 1 cut(s) 425
PsuI RGATCY 1 cut(s) 748
PsyI GACNNNGTC 1 cut(s) 620
PvuII CAGCTG 1 cut(s) 30
RsaI GTAC 1 cut(s) 330
RsaNI GTAC 1 cut(s) 329
SacI GAGCTC 2 cut(s) 282, 468
SapI GCTCTTC 2 cut(s) 40, 104
SaqAI TTAA 4 cut(s) 125, 551, 735, 839
SatI GCNGC 5 cut(s) 31, 247, 259, 270, 516
Sau3AI GATC 1 cut(s) 748
Sau96I GGNCC 1 cut(s) 425
SchI GAGTC 2 cut(s) 221, 630
ScrFI CCNGG 4 cut(s) 274, 369, 370, 651
SduI GDGCHC 2 cut(s) 282, 468
SfaNI GCATC 1 cut(s) 684
SfcI CTRYAG 1 cut(s) 744
SinI GGWCC 1 cut(s) 425
SmaI CCCGGG 1 cut(s) 370
Sse9I AATT 2 cut(s) 377, 634
SsiI CCGC 6 cut(s) 160, 246, 270, 503, 578, 784
SstI GAGCTC 2 cut(s) 282, 468
StyD4I CCNGG 4 cut(s) 272, 367, 368, 649
TaaI ACNGT 6 cut(s) 145, 178, 439, 448, 599, 706
TaiI ACGT 1 cut(s) 763
TaqI TCGA 4 cut(s) 180, 192, 361, 498
TasI AATT 2 cut(s) 377, 634
TauI GCSGC 2 cut(s) 249, 272
TfiI GAWTC 2 cut(s) 488, 660
Tru1I TTAA 4 cut(s) 125, 551, 735, 839
Tru9I TTAA 4 cut(s) 125, 551, 735, 839
TscAI CASTG 2 cut(s) 148, 711
TseFI GTSAC 2 cut(s) 433, 868
TseI GCWGC 3 cut(s) 30, 258, 515
Tsp45I GTSAC 2 cut(s) 433, 868
TspDTI ATGAA 4 cut(s) 198, 365, 381, 390
TspGWI ACGGA 2 cut(s) 347, 577
TspMI CCCGGG 1 cut(s) 368
TspRI CASTG 2 cut(s) 148, 711
Tth111I GACNNNGTC 1 cut(s) 620
VpaK11BI GGWCC 1 cut(s) 425
VspI ATTAAT 1 cut(s) 735
XapI RAATTY 1 cut(s) 377
XceI RCATGY 1 cut(s) 226
XmaI CCCGGG 1 cut(s) 368
XmiI GTMKAC 1 cut(s) 534
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.