AT4G27070

tryptophan synthase

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Forward (+)
13586268 .. 13588897
2630 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G27070.1

Sequence Viewer

Length: 1428 bp
ATGGCCACCGCAAGCACCGCTGCTACTTTCAGACCCTCCTCCGTTTCAGCTTCTTCCGAATTAACCCATCTGAGATCACCCTCCAAACTCCCCAAATTTACGCCTCTGCCATCGGCTCGCTCACGGTCCTCTTCTTCGTTCTCCGTCTCCTGCACCATCGCTAAGGACCCAGCTGTTGTCATGGCGGACTCGGAGAAGATTAAGGCCGCTGGATCTGATCCGACTATGTGGCAACGACCTGATTCATTCGGTCGTTTCGGGAAGTTTGGCGGCAAGTACGTCCCCGAAACTCTAATGCACGCCCTCTCTGAACTCGAAACGGCTTTCTATTCGCTCGCCACCGACGAAGATTTCCAGAGAGAATTAGCAGAGATCTTGAAAGACTACGTTGGTCGGGAAAGTCCTCTTTACTTTGCAGAGAGGCTCACGGAGCATTACCGCCGTGAAAACGGTGAAGGGCCGCTCATATACCTCAAAAGGGAAGACTTGAACCACACCGGTGCTCACAAGATCAACAACGCTGTGGCTCAGGCTCTTCTCGCCAAGCGTCTAGGAAAGAAACGAATTATTGCTGAGACAGGGGCTGGTCAACATGGTGTAGCCACAGCTACTGTGTGTGCACGTTTCGGTTTGCAGTGCATTATCTACATGGGTGCTCAAGACATGGAGAGACAAGCTCTTAATGTGTTCAGAATGCGTCTTCTCGGTGCTGAGGTAAGGGGAGTCCACTCTGGAACAGCCACTTTAAAGGACGCAACTTCTGAAGCTATAAGGGATTGGGTGACCAATGTGGAGACTACACATTACATATTGGGATCCGTTGCGGGTCCTCATCCTTATCCTATGATGGTCAGAGACTTTCACGCGGTGATTGGTAAAGAAACAAGGAAACAAGCGATGGAGAAATGGGGCGGGAAGCCTGATGTTCTGGTTGCTTGTGTCGGTGGTGGTTCAAATGCTATGGGACTCTTCCATGAATTTGTCGATGACACAGAGGTTCGAATGATTGGTGTGGAAGCCGCTGGATTTGGATTGGACAGCGGCAAACATGCTGCCACATTGACAAAAGGAGATGTCGGTGTACTCCACGGAGCTATGAGTTACTTGCTGCAAGATGATGATGGCCAAATCATTGAACCACACTCCATCAGTGCCGGATTGGACTACCCTGGAGTCGGACCTGAGCATAGTTTCCTTAAAGACGTGGGAAGGGCTGAATACTTTAGCGTTACTGATGAAGAAGCATTAGAAGCTTTCAAGAGAGTGTCTCGGTTGGAGGGAATAATCCCGGCATTGGAGACATCGCACGCATTGGCCCATCTGGAGAAGCTTTGTCCGACGTTACCTGATGGAGCCAGAGTGGTATTAAACTTCAGTGGGAGAGGCGACAAGGATGTTCAGACTGCAATCAAGTATCTCGAAGTTTAA

Protein Analysis

475

Amino Acids

51.6

Weight (kDa)

6.2

Isoelectric Point (pI)

36.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PALP PF00291 132 - 460 1.8e-44 Pyridoxal-phosphate dependent enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 463
AccII CGCG 1 cut(s) 866
AclWI GGATC 4 cut(s) 212, 220, 810, 823
AcoI YGGCCR 2 cut(s) 3, 1123
AcsI RAATTY 2 cut(s) 95, 977
AcuI CTGAAG 2 cut(s) 783, 1357
AdeI CACNNNGTG 1 cut(s) 868
AfaI GTAC 2 cut(s) 278, 1083
AfiI CCNNNNNNNGG 3 cut(s) 478, 1175, 1294
AgeI ACCGGT 1 cut(s) 497
AgsI TTSAA 5 cut(s) 379, 490, 954, 1136, 1258
AjiI CACGTC 1 cut(s) 1204
AjnI CCWGG 1 cut(s) 1168
AleI CACNNNNGTG 1 cut(s) 498
AluBI AGCT 8 cut(s) 50, 173, 608, 677, 767, 1094, 1253, 1330
AluI AGCT 8 cut(s) 50, 173, 608, 677, 767, 1094, 1253, 1330
Alw21I GWGCWC 3 cut(s) 505, 622, 658
Alw26I GTCTC 7 cut(s) 151, 569, 664, 788, 849, 1272, 1292
Alw44I GTGCAC 1 cut(s) 618
AlwI GGATC 4 cut(s) 212, 220, 810, 823
AlwNI CAGNNNCTG 2 cut(s) 584, 611
AoxI GGCC 5 cut(s) 3, 204, 458, 1123, 1314
ApaLI GTGCAC 1 cut(s) 618
ApeKI GCWGC 3 cut(s) 20, 1052, 1108
ApoI RAATTY 2 cut(s) 95, 977
AsiGI ACCGGT 1 cut(s) 497
AspS9I GGNCC 6 cut(s) 126, 166, 458, 827, 1178, 1315
AsuC2I CCSGG 1 cut(s) 1289
AsuHPI GGTGA 4 cut(s) 69, 464, 793, 880
AsuII TTCGAA 1 cut(s) 1000
AvaII GGWCC 4 cut(s) 126, 166, 827, 1178
BaeGI GKGCMC 1 cut(s) 622
BalI TGGCCA 2 cut(s) 5, 1125
BamHI GGATCC 1 cut(s) 815
BbsI GAAGAC 2 cut(s) 489, 692
Bbv12I GWGCWC 3 cut(s) 505, 622, 658
BbvCI CCTCAGC 1 cut(s) 711
BbvI GCAGC 3 cut(s) 7, 1039, 1095
BccI CCATC 9 cut(s) 75, 118, 164, 841, 892, 1115, 1154, 1326, 1343
BceAI ACGGC 2 cut(s) 336, 426
BciT130I CCWGG 1 cut(s) 1170
BcnI CCSGG 1 cut(s) 1289
BcoDI GTCTC 7 cut(s) 151, 569, 664, 788, 849, 1272, 1292
BfaI CTAG 1 cut(s) 551
BglII AGATCT 1 cut(s) 372
BisI GCNGC 8 cut(s) 21, 207, 271, 461, 1020, 1042, 1053, 1109
BlsI GCNGC 8 cut(s) 22, 208, 272, 462, 1021, 1043, 1054, 1110
Bme1390I CCNGG 2 cut(s) 1170, 1289
Bme18I GGWCC 4 cut(s) 126, 166, 827, 1178
BmgBI CACGTC 1 cut(s) 1204
BmgT120I GGNCC 6 cut(s) 126, 166, 458, 827, 1178, 1315
BmiI GGNNCC 4 cut(s) 168, 817, 828, 1354
BmrFI CCNGG 2 cut(s) 1170, 1289
BpiI GAAGAC 2 cut(s) 489, 692
BplI GAGNNNNNCTC 4 cut(s) 661, 693, 1252, 1284
BpmI CTGGAG 2 cut(s) 1191, 1343
Bpu10I CCTNAGC 4 cut(s) 162, 528, 711, 1182
Bpu14I TTCGAA 1 cut(s) 1000
BpuEI CTTGAG 1 cut(s) 642
BpuMI CCSGG 1 cut(s) 1289
BsaJI CCNNGG 2 cut(s) 1087, 1168
BsaWI WCCGGW 1 cut(s) 497
BsaXI ACNNNNNCTCC 2 cut(s) 1344, 1374
Bsc4I CCNNNNNNNGG 3 cut(s) 478, 1175, 1294
Bse118I RCCGGY 1 cut(s) 497
BseBI CCWGG 1 cut(s) 1170
BseDI CCNNGG 2 cut(s) 1087, 1168
BseGI GGATG 2 cut(s) 832, 1399
BseLI CCNNNNNNNGG 3 cut(s) 478, 1175, 1294
BseMII CTCAG 5 cut(s) 62, 542, 564, 702, 1173
BseRI GAGGAG 1 cut(s) 28
BseSI GKGCMC 1 cut(s) 622
BseXI GCAGC 3 cut(s) 7, 1039, 1095
BseYI CCCAGC 1 cut(s) 169
BsgI GTGCAG 1 cut(s) 136
Bsh1236I CGCG 1 cut(s) 866
Bsh1285I CGRYCG 1 cut(s) 253
BshFI GGCC 5 cut(s) 5, 206, 460, 1125, 1316
BshTI ACCGGT 1 cut(s) 497
BsiEI CGRYCG 1 cut(s) 253
BsiHKAI GWGCWC 3 cut(s) 505, 622, 658
BsiSI CCGG 3 cut(s) 498, 1155, 1289
BslFI GGGAC 2 cut(s) 266, 978
BslI CCNNNNNNNGG 3 cut(s) 478, 1175, 1294
BsmAI GTCTC 7 cut(s) 151, 569, 664, 788, 849, 1272, 1292
BsmBI CGTCTC 1 cut(s) 151
BsmFI GGGAC 2 cut(s) 266, 978
BsmI GAATGC 1 cut(s) 699
BsnI GGCC 5 cut(s) 5, 206, 460, 1125, 1316
Bsp119I TTCGAA 1 cut(s) 1000
Bsp1286I GDGCHC 3 cut(s) 505, 622, 658
Bsp143I GATC 6 cut(s) 74, 212, 217, 372, 510, 815
BspANI GGCC 5 cut(s) 5, 206, 460, 1125, 1316
BspCNI CTCAG 5 cut(s) 63, 541, 565, 703, 1174
BspFNI CGCG 1 cut(s) 866
BspLI GGNNCC 4 cut(s) 168, 817, 828, 1354
BspPI GGATC 4 cut(s) 212, 220, 810, 823
BspQI GCTCTTC 1 cut(s) 540
BspT104I TTCGAA 1 cut(s) 1000
BsrBI CCGCTC 1 cut(s) 463
BsrFI RCCGGY 1 cut(s) 497
BssAI RCCGGY 1 cut(s) 497
BssECI CCNNGG 2 cut(s) 1087, 1168
BssMI GATC 6 cut(s) 74, 212, 217, 372, 510, 815
Bst2UI CCWGG 1 cut(s) 1170
Bst4CI ACNGT 3 cut(s) 126, 452, 613
Bst6I CTCTTC 3 cut(s) 136, 540, 974
BstBI TTCGAA 1 cut(s) 1000
BstC8I GCNNGC 5 cut(s) 13, 118, 300, 336, 1308
BstDEI CTNAG 6 cut(s) 71, 162, 528, 573, 711, 1182
BstDSI CCRYGG 1 cut(s) 1087
BstEII GGTNACC 1 cut(s) 781
BstF5I GGATG 2 cut(s) 832, 1399
BstFNI CGCG 1 cut(s) 866
BstKTI GATC 6 cut(s) 77, 215, 220, 375, 513, 818
BstMAI GTCTC 7 cut(s) 151, 569, 664, 788, 849, 1272, 1292
BstMBI GATC 6 cut(s) 74, 212, 217, 372, 510, 815
BstMCI CGRYCG 1 cut(s) 253
BstMWI GCNNNNNNNGC 4 cut(s) 17, 430, 539, 1250
BstNI CCWGG 1 cut(s) 1170
BstNSI RCATGY 1 cut(s) 1052
BstPI GGTNACC 1 cut(s) 781
BstSCI CCNGG 2 cut(s) 1168, 1287
BstSLI GKGCMC 1 cut(s) 622
BstUI CGCG 1 cut(s) 866
BstV1I GCAGC 3 cut(s) 7, 1039, 1095
BstV2I GAAGAC 2 cut(s) 489, 692
BstX2I RGATCY 3 cut(s) 212, 372, 815
BstYI RGATCY 3 cut(s) 212, 372, 815
BsuRI GGCC 5 cut(s) 5, 206, 460, 1125, 1316
BtgI CCRYGG 1 cut(s) 1087
BtgZI GCGATG 3 cut(s) 142, 911, 1287
BtrI CACGTC 1 cut(s) 1204
BtsCI GGATG 2 cut(s) 832, 1399
BtsI GCAGTG 1 cut(s) 641
BtsIMutI CAGTG 3 cut(s) 641, 1156, 1381
Cac8I GCNNGC 5 cut(s) 13, 118, 300, 336, 1308
CaiI CAGNNNCTG 2 cut(s) 584, 611
Cfr10I RCCGGY 1 cut(s) 497
Cfr13I GGNCC 6 cut(s) 126, 166, 458, 827, 1178, 1315
CseI GACGC 3 cut(s) 536, 686, 761
Csp6I GTAC 2 cut(s) 277, 1082
CspAI ACCGGT 1 cut(s) 497
CviAII CATG 6 cut(s) 181, 593, 649, 664, 974, 1049
CviQI GTAC 2 cut(s) 277, 1082
DdeI CTNAG 6 cut(s) 71, 162, 528, 573, 711, 1182
DpnI GATC 6 cut(s) 76, 214, 219, 374, 512, 817
DpnII GATC 6 cut(s) 74, 212, 217, 372, 510, 815
DraI TTTAAA 1 cut(s) 747
DraIII CACNNNGTG 1 cut(s) 868
EaeI YGGCCR 2 cut(s) 3, 1123
Eam1104I CTCTTC 3 cut(s) 136, 540, 974
EarI CTCTTC 3 cut(s) 136, 540, 974
EciI GGCGGA 1 cut(s) 200
Eco47I GGWCC 4 cut(s) 126, 166, 827, 1178
Eco57I CTGAAG 2 cut(s) 783, 1357
Eco91I GGTNACC 1 cut(s) 781
EcoO109I RGGNCCY 2 cut(s) 166, 827
EcoO65I GGTNACC 1 cut(s) 781
EcoRII CCWGG 1 cut(s) 1168
Esp3I CGTCTC 1 cut(s) 151
FaeI CATG 6 cut(s) 184, 596, 652, 667, 977, 1052
FaqI GGGAC 2 cut(s) 266, 978
FatI CATG 6 cut(s) 180, 592, 648, 663, 973, 1048
FauI CCCGC 2 cut(s) 817, 905
Fnu4HI GCNGC 8 cut(s) 21, 207, 271, 461, 1020, 1042, 1053, 1109
FokI GGATG 2 cut(s) 819, 1406
Fsp4HI GCNGC 8 cut(s) 21, 207, 271, 461, 1020, 1042, 1053, 1109
FspBI CTAG 1 cut(s) 551
GluI GCNGC 8 cut(s) 21, 207, 271, 461, 1020, 1042, 1053, 1109
GsaI CCCAGC 1 cut(s) 173
GsuI CTGGAG 2 cut(s) 1191, 1343
HaeIII GGCC 5 cut(s) 5, 206, 460, 1125, 1316
HapII CCGG 3 cut(s) 498, 1155, 1289
HgaI GACGC 3 cut(s) 536, 686, 761
Hin1II CATG 6 cut(s) 184, 596, 652, 667, 977, 1052
HincII GTYRAC 1 cut(s) 590
HindII GTYRAC 1 cut(s) 590
HindIII AAGCTT 2 cut(s) 1251, 1328
HinfI GANTC 5 cut(s) 188, 242, 723, 966, 1173
HpaII CCGG 3 cut(s) 498, 1155, 1289
HphI GGTGA 4 cut(s) 69, 464, 793, 880
Hpy166II GTNNAC 4 cut(s) 590, 620, 727, 1082
Hpy188III TCNNGA 9 cut(s) 259, 355, 376, 395, 659, 732, 1258, 1322, 1418
Hpy8I GTNNAC 4 cut(s) 590, 620, 727, 1082
Hpy99I CGWCG 2 cut(s) 347, 1342
HpyAV CCTTC 2 cut(s) 449, 1203
HpyCH4III ACNGT 3 cut(s) 126, 452, 613
HpyCH4IV ACGT 5 cut(s) 279, 387, 622, 1203, 1340
HpyCH4V TGCA 8 cut(s) 153, 298, 416, 620, 634, 639, 1111, 1406
HpyF10VI GCNNNNNNNGC 4 cut(s) 17, 430, 539, 1250
HpyF3I CTNAG 6 cut(s) 71, 162, 528, 573, 711, 1182
HpySE526I ACGT 5 cut(s) 279, 387, 622, 1203, 1340
Hsp92II CATG 6 cut(s) 184, 596, 652, 667, 977, 1052
Kzo9I GATC 6 cut(s) 74, 212, 217, 372, 510, 815
LguI GCTCTTC 1 cut(s) 540
LmnI GCTCC 3 cut(s) 430, 1091, 1352
Lsp1109I GCAGC 3 cut(s) 7, 1039, 1095
MaeI CTAG 1 cut(s) 551
MaeII ACGT 5 cut(s) 279, 387, 622, 1203, 1340
MaeIII GTNAC 4 cut(s) 781, 1100, 1228, 1341
MalI GATC 6 cut(s) 76, 214, 219, 374, 512, 817
MbiI CCGCTC 1 cut(s) 463
MboI GATC 6 cut(s) 74, 212, 217, 372, 510, 815
MflI RGATCY 3 cut(s) 212, 372, 815
MhlI GDGCHC 3 cut(s) 505, 622, 658
MlsI TGGCCA 2 cut(s) 5, 1125
MluCI AATT 5 cut(s) 59, 95, 362, 564, 977
MluNI TGGCCA 2 cut(s) 5, 1125
MlyI GAGTC 4 cut(s) 182, 732, 960, 1182
MmeI TCCRAC 4 cut(s) 245, 1156, 1254, 1361
Mox20I TGGCCA 2 cut(s) 5, 1125
MscI TGGCCA 2 cut(s) 5, 1125
MseI TTAA 7 cut(s) 62, 201, 681, 746, 1197, 1367, 1426
MslI CAYNNNNRTG 1 cut(s) 498
Msp20I TGGCCA 2 cut(s) 5, 1125
MspA1I CMGCKG 5 cut(s) 20, 173, 209, 1022, 1041
MspI CCGG 3 cut(s) 498, 1155, 1289
MspR9I CCNGG 2 cut(s) 1170, 1289
Mva1269I GAATGC 1 cut(s) 699
MvaI CCWGG 1 cut(s) 1170
MvnI CGCG 1 cut(s) 866
MwoI GCNNNNNNNGC 4 cut(s) 17, 430, 539, 1250
NciI CCSGG 1 cut(s) 1289
NdeII GATC 6 cut(s) 74, 212, 217, 372, 510, 815
NlaIII CATG 6 cut(s) 184, 596, 652, 667, 977, 1052
NlaIV GGNNCC 4 cut(s) 168, 817, 828, 1354
NmuCI GTSAC 1 cut(s) 781
NspI RCATGY 1 cut(s) 1052
NspV TTCGAA 1 cut(s) 1000
OliI CACNNNNGTG 1 cut(s) 498
PciSI GCTCTTC 1 cut(s) 540
PcsI WCGNNNNNNNCGW 1 cut(s) 342
PctI GAATGC 1 cut(s) 699
PfeI GAWTC 1 cut(s) 242
PinAI ACCGGT 1 cut(s) 497
PkrI GCNGC 8 cut(s) 22, 208, 272, 462, 1021, 1043, 1054, 1110
PleI GAGTC 4 cut(s) 182, 731, 960, 1181
PpsI GAGTC 4 cut(s) 182, 731, 960, 1181
PpuMI RGGWCCY 2 cut(s) 166, 827
Psp5II RGGWCCY 2 cut(s) 166, 827
Psp6I CCWGG 1 cut(s) 1168
PspEI GGTNACC 1 cut(s) 781
PspFI CCCAGC 1 cut(s) 169
PspGI CCWGG 1 cut(s) 1168
PspN4I GGNNCC 4 cut(s) 168, 817, 828, 1354
PspPI GGNCC 6 cut(s) 126, 166, 458, 827, 1178, 1315
PspPPI RGGWCCY 2 cut(s) 166, 827
PstNI CAGNNNCTG 2 cut(s) 584, 611
PsuI RGATCY 3 cut(s) 212, 372, 815
PvuII CAGCTG 1 cut(s) 173
RsaI GTAC 2 cut(s) 278, 1083
RsaNI GTAC 2 cut(s) 277, 1082
RseI CAYNNNNRTG 1 cut(s) 498
SapI GCTCTTC 1 cut(s) 540
SaqAI TTAA 7 cut(s) 62, 201, 681, 746, 1197, 1367, 1426
SatI GCNGC 8 cut(s) 21, 207, 271, 461, 1020, 1042, 1053, 1109
Sau3AI GATC 6 cut(s) 74, 212, 217, 372, 510, 815
Sau96I GGNCC 6 cut(s) 126, 166, 458, 827, 1178, 1315
SchI GAGTC 4 cut(s) 182, 732, 960, 1182
ScrFI CCNGG 2 cut(s) 1170, 1289
SduI GDGCHC 3 cut(s) 505, 622, 658
SfuI TTCGAA 1 cut(s) 1000
SgrAI CRCCGGYG 1 cut(s) 497
SinI GGWCC 4 cut(s) 126, 166, 827, 1178
SmiMI CAYNNNNRTG 1 cut(s) 498
SmlI CTYRAG 1 cut(s) 657
SmoI CTYRAG 1 cut(s) 657
Sse9I AATT 5 cut(s) 59, 95, 362, 564, 977
SspMI CTAG 1 cut(s) 551
StyD4I CCNGG 2 cut(s) 1168, 1287
TaaI ACNGT 3 cut(s) 126, 452, 613
TaiI ACGT 5 cut(s) 282, 390, 625, 1206, 1343
TaqI TCGA 4 cut(s) 315, 984, 1000, 1419
TaqII GACCGA 1 cut(s) 239
TasI AATT 5 cut(s) 59, 95, 362, 564, 977
TatI WGTACW 1 cut(s) 1081
TauI GCSGC 5 cut(s) 209, 273, 463, 1022, 1044
TfiI GAWTC 1 cut(s) 242
Tru1I TTAA 7 cut(s) 62, 201, 681, 746, 1197, 1367, 1426
Tru9I TTAA 7 cut(s) 62, 201, 681, 746, 1197, 1367, 1426
TscAI CASTG 3 cut(s) 641, 1156, 1381
TseFI GTSAC 1 cut(s) 781
TseI GCWGC 3 cut(s) 20, 1052, 1108
Tsp45I GTSAC 1 cut(s) 781
TspDTI ATGAA 3 cut(s) 234, 990, 1251
TspGWI ACGGA 5 cut(s) 31, 133, 443, 808, 1104
TspRI CASTG 3 cut(s) 641, 1156, 1381
VneI GTGCAC 1 cut(s) 618
VpaK11BI GGWCC 4 cut(s) 126, 166, 827, 1178
XapI RAATTY 2 cut(s) 95, 977
XceI RCATGY 1 cut(s) 1052
XspI CTAG 1 cut(s) 551
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.