Rroxscaffold_7G00190640

tryptophan synthase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Forward (+)
30850291 .. 30851499
1209 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00190640.1

Sequence Viewer

Length: 1209 bp
ATGGCGGGCTTGCCCCGACCCGATTCATTTGGACGGTTTGGGAAGTATGGCGGGAAGTACGTCCCAGAAACGCTAATGCACGCGCTGACAGAACTAGAGACTGCGTTTTACGCTCTTGCTCATGACGGAGAATTTGAGAAAGAGTTGAATGGGATTTTGAGAGACTATGTTGGTAGGGAGACTCCTCTCTATTTTGCAGAGAGGCTGACTGAACACTACAGACGTCCAAACGGTGAAGGCCCTCACATTTACCTAAAAAGGGAAGATCTTAACCATACCGGGGCACACAAGATCAACAATGCTGTTGGCCAAGCTTTGCTCGCTAAGCGGTTGGGCAAGAAACGCATTATTGCTGAAACTGGGGCAGGTCAACATGGAGTTGCCACTGCAACTGTTTGTGCTCGGTTTGGGTTGCAATGCATTATTTACATGGGTGCCCAAGATATGGAAAGGCAAGCCCTCAACGTTTTCCGAATGCGGCTTCTTGGTGCTAAAGTTAAGGCTGTTCATTCTGGAACAGCAACACTAAAGGATGCTACTTCAGAAGCTATACGGGATTGGGTGACTAATGTCGAGACAACTCATTATATTTTGGGCTCTGTTGCTGGCCCTCATCCATACCCTATGATGGTTCGCGATTTCCACAAGGTGATAGGTAAAGAAACAAGAAAACAGGCACTCGAAAAATGGGGTGGAAAGCCAGATGTGCTAGTTGCTTGTGTAGGTGGAGGATCAAACGCTATGGGACTCTTCCATGAGTTCGTTGAAGACAAAGATGTTCGATTGATAGGAGTAGAAGCTGCAGGGTTTGGATTGGATAGTGGCAAGCATGCTGCAACTTTGACAAATGCTGATGTTGGGGTTCTGCACGGAGCTATGAGCTACTTGTTACAGGATGAAGATGGCCAAATTATTGAGCCTCATTCTATAAGTGCAGGCTTAGATTATCCTGGGGTTGGACCGGAGCACAGTTTTCTGAAAGACTTGGGGCGTGCTGAGTACTACAGTGTTACTGACGATGAAGCATTGGAAGCTTTTAAAAAACTGTCACAACTTGAGGGAATAATTCCAGCTTTGGAGACCTCTCATGCACTAGCCTACTTAGAAAAGTTGTGTCCTACTCTTCCTAATGGGGCAAAGGTCGTCCTTAACTGCAGTGGCAGAGGGGATAAGGATGTTCATACTGCCATCAAGCACTTGCAGGCGTGA

Protein Analysis

402

Amino Acids

43.83

Weight (kDa)

6.44

Isoelectric Point (pI)

27.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PALP PF00291 58 - 387 8.4e-45 Pyridoxal-phosphate dependent enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 226
Acc36I ACCTGC 1 cut(s) 356
AccB1I GGYRCC 1 cut(s) 434
AccB7I CCANNNNNTGG 1 cut(s) 445
AccII CGCG 2 cut(s) 83, 636
AciI CCGC 4 cut(s) 5, 51, 328, 478
AclI AACGTT 1 cut(s) 465
AclWI GGATC 1 cut(s) 739
AcoI YGGCCR 2 cut(s) 307, 904
AcsI RAATTY 1 cut(s) 131
AcuI CTGAAG 1 cut(s) 525
AcyI GRCGYC 1 cut(s) 223
AdeI CACNNNGTG 1 cut(s) 649
AfaI GTAC 2 cut(s) 59, 1001
AfiI CCNNNNNNNGG 5 cut(s) 259, 280, 445, 628, 956
AgsI TTSAA 2 cut(s) 148, 767
AjnI CCWGG 1 cut(s) 949
AluBI AGCT 7 cut(s) 314, 548, 800, 875, 882, 1034, 1073
AluI AGCT 7 cut(s) 314, 548, 800, 875, 882, 1034, 1073
Alw21I GWGCWC 2 cut(s) 403, 969
Alw26I GTCTC 5 cut(s) 92, 156, 173, 569, 1073
AlwI GGATC 1 cut(s) 739
AoxI GGCC 4 cut(s) 238, 307, 607, 904
ApeKI GCWGC 2 cut(s) 800, 833
ApoI RAATTY 1 cut(s) 131
ArsI GACNNNNNNTTYG 2 cut(s) 116, 148
AspLEI GCGC 1 cut(s) 85
AspS9I GGNCC 3 cut(s) 239, 608, 959
AsuC2I CCSGG 1 cut(s) 280
AsuHPI GGTGA 3 cut(s) 245, 574, 661
AvaII GGWCC 1 cut(s) 959
BaeGI GKGCMC 2 cut(s) 286, 439
BalI TGGCCA 2 cut(s) 309, 906
BanI GGYRCC 1 cut(s) 434
BanII GRGCYC 1 cut(s) 599
BbsI GAAGAC 1 cut(s) 774
Bbv12I GWGCWC 2 cut(s) 403, 969
BbvI GCAGC 2 cut(s) 787, 820
BccI CCATC 3 cut(s) 622, 896, 1196
BciT130I CCWGG 1 cut(s) 951
BcnI CCSGG 1 cut(s) 280
BcoDI GTCTC 5 cut(s) 92, 156, 173, 569, 1073
BfaI CTAG 3 cut(s) 95, 710, 1094
BfmI CTRYAG 4 cut(s) 217, 801, 1003, 1153
BfuAI ACCTGC 1 cut(s) 356
BglII AGATCT 1 cut(s) 265
BisI GCNGC 3 cut(s) 479, 801, 834
BlpI GCTNAGC 1 cut(s) 324
BlsI GCNGC 3 cut(s) 480, 802, 835
BmcAI AGTACT 1 cut(s) 1001
Bme1390I CCNGG 2 cut(s) 280, 951
Bme18I GGWCC 1 cut(s) 959
BmgT120I GGNCC 3 cut(s) 239, 608, 959
BmiI GGNNCC 1 cut(s) 436
BmrFI CCNGG 2 cut(s) 280, 951
BmrI ACTGGG 1 cut(s) 369
BmsI GCATC 1 cut(s) 523
BmuI ACTGGG 1 cut(s) 369
BoxI GACNNNNGTC 1 cut(s) 569
BpiI GAAGAC 1 cut(s) 774
Bpu1102I GCTNAGC 1 cut(s) 324
BpuEI CTTGAG 1 cut(s) 1076
BpuMI CCSGG 1 cut(s) 280
BsaHI GRCGYC 1 cut(s) 223
BsaI GGTCTC 1 cut(s) 1073
BsaJI CCNNGG 2 cut(s) 279, 950
BsaWI WCCGGW 1 cut(s) 961
Bsc4I CCNNNNNNNGG 5 cut(s) 259, 280, 445, 628, 956
Bse1I ACTGG 1 cut(s) 364
Bse3DI GCAATG 1 cut(s) 422
BseBI CCWGG 1 cut(s) 951
BseDI CCNNGG 2 cut(s) 279, 950
BseGI GGATG 4 cut(s) 538, 613, 901, 1180
BseLI CCNNNNNNNGG 5 cut(s) 259, 280, 445, 628, 956
BseMI GCAATG 1 cut(s) 422
BseMII CTCAG 1 cut(s) 987
BseNI ACTGG 1 cut(s) 364
BseRI GAGGAG 1 cut(s) 174
BseSI GKGCMC 2 cut(s) 286, 439
BseXI GCAGC 2 cut(s) 787, 820
BsgI GTGCAG 2 cut(s) 851, 954
Bsh1236I CGCG 2 cut(s) 83, 636
BshFI GGCC 4 cut(s) 240, 309, 609, 906
BshNI GGYRCC 1 cut(s) 434
BsiHKAI GWGCWC 2 cut(s) 403, 969
BsiSI CCGG 2 cut(s) 279, 962
BslFI GGGAC 2 cut(s) 47, 759
BslI CCNNNNNNNGG 5 cut(s) 259, 280, 445, 628, 956
BsmAI GTCTC 5 cut(s) 92, 156, 173, 569, 1073
BsmFI GGGAC 2 cut(s) 47, 759
BsmI GAATGC 1 cut(s) 480
BsnI GGCC 4 cut(s) 240, 309, 609, 906
Bso31I GGTCTC 1 cut(s) 1073
Bsp1286I GDGCHC 5 cut(s) 286, 403, 439, 599, 969
Bsp143I GATC 3 cut(s) 265, 291, 731
Bsp1720I GCTNAGC 1 cut(s) 324
Bsp68I TCGCGA 1 cut(s) 636
BspACI CCGC 4 cut(s) 5, 51, 328, 478
BspANI GGCC 4 cut(s) 240, 309, 609, 906
BspCNI CTCAG 1 cut(s) 988
BspFNI CGCG 2 cut(s) 83, 636
BspHI TCATGA 1 cut(s) 121
BspLI GGNNCC 1 cut(s) 436
BspMAI CTGCAG 2 cut(s) 805, 1157
BspMI ACCTGC 1 cut(s) 356
BspPI GGATC 1 cut(s) 739
BspT107I GGYRCC 1 cut(s) 434
BspTNI GGTCTC 1 cut(s) 1073
BsrDI GCAATG 1 cut(s) 422
BsrI ACTGG 1 cut(s) 364
BssECI CCNNGG 2 cut(s) 279, 950
BssMI GATC 3 cut(s) 265, 291, 731
BssNI GRCGYC 1 cut(s) 223
Bst2UI CCWGG 1 cut(s) 951
Bst4CI ACNGT 6 cut(s) 36, 233, 394, 971, 1007, 1047
Bst6I CTCTTC 2 cut(s) 755, 1128
BstACI GRCGYC 1 cut(s) 223
BstDEI CTNAG 4 cut(s) 324, 940, 996, 1102
BstF5I GGATG 4 cut(s) 538, 613, 901, 1180
BstFNI CGCG 2 cut(s) 83, 636
BstHHI GCGC 1 cut(s) 85
BstKTI GATC 3 cut(s) 268, 294, 734
BstMAI GTCTC 5 cut(s) 92, 156, 173, 569, 1073
BstMBI GATC 3 cut(s) 265, 291, 731
BstMWI GCNNNNNNNGC 6 cut(s) 110, 320, 325, 342, 706, 1031
BstNI CCWGG 1 cut(s) 951
BstNSI RCATGY 1 cut(s) 833
BstPAI GACNNNNGTC 1 cut(s) 569
BstSCI CCNGG 2 cut(s) 278, 949
BstSFI CTRYAG 4 cut(s) 217, 801, 1003, 1153
BstSLI GKGCMC 2 cut(s) 286, 439
BstUI CGCG 2 cut(s) 83, 636
BstV1I GCAGC 2 cut(s) 787, 820
BstV2I GAAGAC 1 cut(s) 774
BstX2I RGATCY 1 cut(s) 265
BstYI RGATCY 1 cut(s) 265
BsuRI GGCC 4 cut(s) 240, 309, 609, 906
BtsCI GGATG 4 cut(s) 538, 613, 901, 1180
BtsI GCAGTG 2 cut(s) 384, 1162
BtsIMutI CAGTG 3 cut(s) 384, 1012, 1162
BtuMI TCGCGA 1 cut(s) 636
BveI ACCTGC 1 cut(s) 356
CciI TCATGA 1 cut(s) 121
CfoI GCGC 1 cut(s) 85
Cfr13I GGNCC 3 cut(s) 239, 608, 959
Csp6I GTAC 2 cut(s) 58, 1000
CviAII CATG 6 cut(s) 122, 374, 430, 755, 830, 1088
CviQI GTAC 2 cut(s) 58, 1000
DdeI CTNAG 4 cut(s) 324, 940, 996, 1102
DpnI GATC 3 cut(s) 267, 293, 733
DpnII GATC 3 cut(s) 265, 291, 731
DraI TTTAAA 1 cut(s) 1039
DraIII CACNNNGTG 1 cut(s) 649
EaeI YGGCCR 2 cut(s) 307, 904
Eam1104I CTCTTC 2 cut(s) 755, 1128
EarI CTCTTC 2 cut(s) 755, 1128
Eco24I GRGCYC 1 cut(s) 599
Eco31I GGTCTC 1 cut(s) 1073
Eco47I GGWCC 1 cut(s) 959
Eco57I CTGAAG 1 cut(s) 525
EcoO109I RGGNCCY 1 cut(s) 239
EcoRII CCWGG 1 cut(s) 949
EcoT22I ATGCAT 1 cut(s) 422
EcoT38I GRGCYC 1 cut(s) 599
FaeI CATG 6 cut(s) 125, 377, 433, 758, 833, 1091
FaqI GGGAC 2 cut(s) 47, 759
FatI CATG 6 cut(s) 121, 373, 429, 754, 829, 1087
FauI CCCGC 1 cut(s) 44
Fnu4HI GCNGC 3 cut(s) 479, 801, 834
FokI GGATG 4 cut(s) 545, 600, 908, 1187
FriOI GRGCYC 1 cut(s) 599
Fsp4HI GCNGC 3 cut(s) 479, 801, 834
FspBI CTAG 3 cut(s) 95, 710, 1094
GlaI GCGC 1 cut(s) 84
GluI GCNGC 3 cut(s) 479, 801, 834
HaeIII GGCC 4 cut(s) 240, 309, 609, 906
HapII CCGG 2 cut(s) 279, 962
HhaI GCGC 1 cut(s) 85
Hin1I GRCGYC 1 cut(s) 223
Hin1II CATG 6 cut(s) 125, 377, 433, 758, 833, 1091
Hin6I GCGC 1 cut(s) 83
HinP1I GCGC 1 cut(s) 83
HincII GTYRAC 1 cut(s) 371
HindII GTYRAC 1 cut(s) 371
HindIII AAGCTT 2 cut(s) 312, 1032
HinfI GANTC 3 cut(s) 23, 181, 747
HpaII CCGG 2 cut(s) 279, 962
HphI GGTGA 3 cut(s) 245, 574, 661
Hpy166II GTNNAC 1 cut(s) 371
Hpy188I TCNGA 3 cut(s) 473, 544, 978
Hpy188III TCNNGA 4 cut(s) 122, 513, 574, 635
Hpy8I GTNNAC 1 cut(s) 371
HpyAV CCTTC 1 cut(s) 230
HpyCH4III ACNGT 6 cut(s) 36, 233, 394, 971, 1007, 1047
HpyCH4IV ACGT 3 cut(s) 60, 223, 465
HpyF10VI GCNNNNNNNGC 6 cut(s) 110, 320, 325, 342, 706, 1031
HpyF3I CTNAG 4 cut(s) 324, 940, 996, 1102
HpySE526I ACGT 3 cut(s) 60, 223, 465
Hsp92I GRCGYC 1 cut(s) 223
Hsp92II CATG 6 cut(s) 125, 377, 433, 758, 833, 1091
HspAI GCGC 1 cut(s) 83
Kzo9I GATC 3 cut(s) 265, 291, 731
LmnI GCTCC 2 cut(s) 872, 964
Lsp1109I GCAGC 2 cut(s) 787, 820
LweI GCATC 1 cut(s) 523
MaeI CTAG 3 cut(s) 95, 710, 1094
MaeII ACGT 3 cut(s) 60, 223, 465
MaeIII GTNAC 4 cut(s) 562, 888, 1009, 1047
MalI GATC 3 cut(s) 267, 293, 733
MboI GATC 3 cut(s) 265, 291, 731
MboII GAAGA 5 cut(s) 275, 742, 779, 911, 1115
MflI RGATCY 1 cut(s) 265
MhlI GDGCHC 5 cut(s) 286, 403, 439, 599, 969
MlsI TGGCCA 2 cut(s) 309, 906
MluCI AATT 3 cut(s) 131, 909, 1065
MluNI TGGCCA 2 cut(s) 309, 906
MlyI GAGTC 2 cut(s) 175, 741
MmeI TCCRAC 1 cut(s) 937
Mox20I TGGCCA 2 cut(s) 309, 906
Mph1103I ATGCAT 1 cut(s) 422
MscI TGGCCA 2 cut(s) 309, 906
MseI TTAA 4 cut(s) 270, 498, 1038, 1149
Msp20I TGGCCA 2 cut(s) 309, 906
MspI CCGG 2 cut(s) 279, 962
MspR9I CCNGG 2 cut(s) 280, 951
Mva1269I GAATGC 1 cut(s) 480
MvaI CCWGG 1 cut(s) 951
MvnI CGCG 2 cut(s) 83, 636
MwoI GCNNNNNNNGC 6 cut(s) 110, 320, 325, 342, 706, 1031
NciI CCSGG 1 cut(s) 280
NdeII GATC 3 cut(s) 265, 291, 731
NlaIII CATG 6 cut(s) 125, 377, 433, 758, 833, 1091
NlaIV GGNNCC 1 cut(s) 436
NmuCI GTSAC 2 cut(s) 562, 1047
NruI TCGCGA 1 cut(s) 636
NsiI ATGCAT 1 cut(s) 422
NspI RCATGY 1 cut(s) 833
PaeI GCATGC 1 cut(s) 833
PagI TCATGA 1 cut(s) 121
PctI GAATGC 1 cut(s) 480
PfeI GAWTC 1 cut(s) 23
PflMI CCANNNNNTGG 1 cut(s) 445
PkrI GCNGC 3 cut(s) 480, 802, 835
PleI GAGTC 2 cut(s) 175, 741
PpsI GAGTC 2 cut(s) 175, 741
PshAI GACNNNNGTC 1 cut(s) 569
Psp1406I AACGTT 1 cut(s) 465
Psp6I CCWGG 1 cut(s) 949
PspGI CCWGG 1 cut(s) 949
PspN4I GGNNCC 1 cut(s) 436
PspPI GGNCC 3 cut(s) 239, 608, 959
PstI CTGCAG 2 cut(s) 805, 1157
PsuI RGATCY 1 cut(s) 265
RruI TCGCGA 1 cut(s) 636
RsaI GTAC 2 cut(s) 59, 1001
RsaNI GTAC 2 cut(s) 58, 1000
SaqAI TTAA 4 cut(s) 270, 498, 1038, 1149
SatI GCNGC 3 cut(s) 479, 801, 834
Sau3AI GATC 3 cut(s) 265, 291, 731
Sau96I GGNCC 3 cut(s) 239, 608, 959
ScaI AGTACT 1 cut(s) 1001
SchI GAGTC 2 cut(s) 175, 741
ScrFI CCNGG 2 cut(s) 280, 951
SduI GDGCHC 5 cut(s) 286, 403, 439, 599, 969
SfaNI GCATC 1 cut(s) 523
SfcI CTRYAG 4 cut(s) 217, 801, 1003, 1153
SinI GGWCC 1 cut(s) 959
SmlI CTYRAG 1 cut(s) 1055
SmoI CTYRAG 1 cut(s) 1055
SphI GCATGC 1 cut(s) 833
Sse9I AATT 3 cut(s) 131, 909, 1065
SsiI CCGC 4 cut(s) 5, 51, 328, 478
SspMI CTAG 3 cut(s) 95, 710, 1094
StyD4I CCNGG 2 cut(s) 278, 949
TaaI ACNGT 6 cut(s) 36, 233, 394, 971, 1007, 1047
TaiI ACGT 3 cut(s) 63, 226, 468
TaqI TCGA 3 cut(s) 573, 681, 781
TasI AATT 3 cut(s) 131, 909, 1065
TatI WGTACW 1 cut(s) 999
TauI GCSGC 1 cut(s) 481
TfiI GAWTC 1 cut(s) 23
Tru1I TTAA 4 cut(s) 270, 498, 1038, 1149
Tru9I TTAA 4 cut(s) 270, 498, 1038, 1149
TscAI CASTG 3 cut(s) 391, 1012, 1162
TseFI GTSAC 2 cut(s) 562, 1047
TseI GCWGC 2 cut(s) 800, 833
Tsp45I GTSAC 2 cut(s) 562, 1047
TspDTI ATGAA 5 cut(s) 15, 497, 912, 1035, 1169
TspGWI ACGGA 2 cut(s) 141, 885
TspRI CASTG 3 cut(s) 391, 1012, 1162
Van91I CCANNNNNTGG 1 cut(s) 445
VpaK11BI GGWCC 1 cut(s) 959
XapI RAATTY 1 cut(s) 131
XceI RCATGY 1 cut(s) 833
XspI CTAG 3 cut(s) 95, 710, 1094
ZraI GACGTC 1 cut(s) 224
ZrmI AGTACT 1 cut(s) 1001
Zsp2I ATGCAT 1 cut(s) 422
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.