AT5G54810

tryptophan synthase

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Reverse (-)
22264594 .. 22266902
2309 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G54810.1

Sequence Viewer

Length: 1413 bp
ATGGCAGCCTCAGGCACCTCTGCTACTTTCAGAGCCTCCGTTTCTTCAGCTCCTTCCTCTTCTTCCCAATTGACCCATTTGAAATCACCCTTCAAAGCTGTCAAATATACGCCTCTGCCATCGTCTCGCTCCAAGTCATCATCCTTCTCCGTCTCCTGCACCATCGCCAAGGACCCGCCTGTTCTCATGGCCGCCGGATCTGACCCGGCCCTGTGGCAACGACCCGATTCGTTCGGTCGGTTTGGGAAGTTTGGTGGGAAGTATGTACCTGAAACCCTTATGCACGCTCTATCTGAGCTTGAATCCGCTTTCTATGCTCTTGCCACCGACGATGATTTCCAGAGAGAGTTGGCTGGAATCTTGAAGGACTATGTGGGTAGAGAAAGTCCTCTGTATTTTGCAGAGAGGCTTACGGAGCATTACAGGCGCGAGAATGGCGAAGGGCCTCTTATATACTTGAAGAGAGAAGACTTGAATCACACAGGAGCTCACAAGATTAACAACGCTGTGGCTCAGGCTCTTCTTGCTAAGCGGTTGGGGAAGAAGAGGATTATTGCTGAGACAGGAGCGGGTCAACATGGTGTGGCTACAGCTACTGTGTGTGCCCGTTTTGGTTTGGAGTGTATTATCTATATGGGTGCTCAAGATATGGAGAGACAAGCACTCAATGTGTTCAGAATGCGACTTCTTGGTGCCGAGGTGAGAGGAGTCCACTCTGGAACAGCGACATTGAAGGATGCGACATCTGAAGCGATAAGAGATTGGGTGACAAATGTGGAGACTACCCATTACATATTGGGATCTGTGGCGGGTCCTCATCCTTACCCCATGATGGTCAGAGACTTTCACGCTGTGATTGGTAAAGAAACAAGGAAACAAGCGTTGGAGAAATGGGGCGGGAAGCCGGATGTCTTGGTGGCTTGTGTCGGTGGTGGTTCAAACGCTATGGGACTCTTCCATGAATTTGTGAATGACACAGAGGTCCGGATGATCGGTGTGGAAGCAGCGGGATTCGGATTGGACAGTGGCAAACACGCTGCTACATTGACAAAGGGAGATGTTGGTGTCCTCCATGGAGCTATGAGTTACTTGCTGCAAGATGATGATGGACAAATCATTGAACCACACTCCATCAGTGCAGGATTGGACTACCCTGGAGTCGGACCCGAGCACAGTTTCTTTAAAGACATGGGACGGGCTGAATACTATAGCATAACCGACGAAGAAGCGTTGGAAGCGTTCAAGAGAGTGTCGCGGTTAGAGGGAATCATTCCAGCACTGGAGACCTCACACGCACTAGCTTACCTCGAGAAGCTATGTCCCACATTATCAGACGGGACGAGAGTGGTCTTGAACTTCAGCGGAAGAGGAGATAAAGATGTTCAGACAGTGGCTAAATATCTTGATGTTTGA

Protein Analysis

470

Amino Acids

50.93

Weight (kDa)

6.36

Isoelectric Point (pI)

36.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PALP PF00291 127 - 455 2e-44 Pyridoxal-phosphate dependent enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 980
AccB1I GGYRCC 2 cut(s) 14, 692
AccBSI CCGCTC 1 cut(s) 569
AccII CGCG 2 cut(s) 429, 1255
AccIII TCCGGA 1 cut(s) 984
AclWI GGATC 2 cut(s) 205, 808
AcoI YGGCCR 1 cut(s) 189
AcsI RAATTY 1 cut(s) 962
AcuI CTGAAG 3 cut(s) 30, 768, 1342
AdeI CACNNNGTG 1 cut(s) 853
AfaI GTAC 1 cut(s) 267
AfiI CCNNNNNNNGG 2 cut(s) 832, 1160
AjnI CCWGG 1 cut(s) 1153
AjuI GAANNNNNNNTTGG 2 cut(s) 866, 898
AluBI AGCT 8 cut(s) 50, 98, 298, 488, 593, 1079, 1301, 1315
AluI AGCT 8 cut(s) 50, 98, 298, 488, 593, 1079, 1301, 1315
Alw21I GWGCWC 3 cut(s) 490, 643, 1173
Alw26I GTCTC 7 cut(s) 129, 157, 554, 649, 773, 834, 1277
AlwI GGATC 2 cut(s) 205, 808
AlwNI CAGNNNCTG 1 cut(s) 596
Ama87I CYCGRG 2 cut(s) 1166, 1307
Aor13HI TCCGGA 1 cut(s) 984
AoxI GGCC 3 cut(s) 189, 207, 443
ApeKI GCWGC 4 cut(s) 5, 1004, 1037, 1093
ApoI RAATTY 1 cut(s) 962
AspLEI GCGC 1 cut(s) 429
AspS9I GGNCC 6 cut(s) 172, 208, 443, 812, 982, 1163
AsuC2I CCSGG 1 cut(s) 206
AsuHPI GGTGA 3 cut(s) 78, 712, 778
AvaI CYCGRG 2 cut(s) 1166, 1307
AvaII GGWCC 4 cut(s) 172, 812, 982, 1163
AxyI CCTNAGG 1 cut(s) 10
BaeGI GKGCMC 1 cut(s) 607
BanI GGYRCC 2 cut(s) 14, 692
BanII GRGCYC 1 cut(s) 490
BbsI GAAGAC 1 cut(s) 474
Bbv12I GWGCWC 3 cut(s) 490, 643, 1173
BbvI GCAGC 4 cut(s) 17, 1016, 1024, 1080
BccI CCATC 5 cut(s) 127, 170, 826, 1100, 1139
BciT130I CCWGG 1 cut(s) 1155
BcnI CCSGG 1 cut(s) 206
BcoDI GTCTC 7 cut(s) 129, 157, 554, 649, 773, 834, 1277
BfaI CTAG 1 cut(s) 1298
BfmI CTRYAG 2 cut(s) 588, 1207
BisI GCNGC 5 cut(s) 6, 192, 1005, 1038, 1094
BlpI GCTNAGC 1 cut(s) 528
BlsI GCNGC 5 cut(s) 7, 193, 1006, 1039, 1095
Bme1390I CCNGG 2 cut(s) 206, 1155
Bme18I GGWCC 4 cut(s) 172, 812, 982, 1163
BmeT110I CYCGRG 2 cut(s) 1166, 1307
BmgT120I GGNCC 6 cut(s) 172, 208, 443, 812, 982, 1163
BmiI GGNNCC 5 cut(s) 16, 174, 694, 813, 1165
BmrFI CCNGG 2 cut(s) 206, 1155
BmsI GCATC 1 cut(s) 727
BpiI GAAGAC 1 cut(s) 474
BpmI CTGGAG 2 cut(s) 1176, 1301
Bpu10I CCTNAGC 1 cut(s) 513
Bpu1102I GCTNAGC 1 cut(s) 528
BpuEI CTTGAG 1 cut(s) 627
BpuMI CCSGG 1 cut(s) 206
BsaI GGTCTC 1 cut(s) 1277
BsaJI CCNNGG 4 cut(s) 168, 696, 1072, 1153
BsaWI WCCGGW 1 cut(s) 984
Bsc4I CCNNNNNNNGG 2 cut(s) 832, 1160
Bse1I ACTGG 1 cut(s) 1284
Bse21I CCTNAGG 1 cut(s) 10
BseAI TCCGGA 1 cut(s) 984
BseBI CCWGG 1 cut(s) 1155
BseDI CCNNGG 4 cut(s) 168, 696, 1072, 1153
BseGI GGATG 5 cut(s) 140, 742, 817, 913, 993
BseLI CCNNNNNNNGG 2 cut(s) 832, 1160
BseMII CTCAG 4 cut(s) 24, 285, 527, 549
BseNI ACTGG 1 cut(s) 1284
BseRI GAGGAG 2 cut(s) 720, 1383
BseSI GKGCMC 1 cut(s) 607
BseXI GCAGC 4 cut(s) 17, 1016, 1024, 1080
BsgI GTGCAG 2 cut(s) 142, 1158
Bsh1236I CGCG 2 cut(s) 429, 1255
Bsh1285I CGRYCG 1 cut(s) 238
BshFI GGCC 3 cut(s) 191, 209, 445
BshNI GGYRCC 2 cut(s) 14, 692
BsiEI CGRYCG 1 cut(s) 238
BsiHKAI GWGCWC 3 cut(s) 490, 643, 1173
BsiHKCI CYCGRG 2 cut(s) 1166, 1307
BsiSI CCGG 4 cut(s) 195, 206, 905, 985
BslFI GGGAC 4 cut(s) 963, 1206, 1305, 1351
BslI CCNNNNNNNGG 2 cut(s) 832, 1160
BsmAI GTCTC 7 cut(s) 129, 157, 554, 649, 773, 834, 1277
BsmBI CGTCTC 2 cut(s) 129, 157
BsmFI GGGAC 4 cut(s) 963, 1206, 1305, 1351
BsmI GAATGC 1 cut(s) 684
BsnI GGCC 3 cut(s) 191, 209, 445
Bso31I GGTCTC 1 cut(s) 1277
BsoBI CYCGRG 2 cut(s) 1166, 1307
Bsp1286I GDGCHC 4 cut(s) 490, 607, 643, 1173
Bsp13I TCCGGA 1 cut(s) 984
Bsp143I GATC 3 cut(s) 197, 800, 990
Bsp1720I GCTNAGC 1 cut(s) 528
Bsp19I CCATGG 1 cut(s) 1072
BspANI GGCC 3 cut(s) 191, 209, 445
BspCNI CTCAG 4 cut(s) 23, 286, 526, 550
BspEI TCCGGA 1 cut(s) 984
BspFNI CGCG 2 cut(s) 429, 1255
BspLI GGNNCC 5 cut(s) 16, 174, 694, 813, 1165
BspPI GGATC 2 cut(s) 205, 808
BspQI GCTCTTC 1 cut(s) 525
BspT107I GGYRCC 2 cut(s) 14, 692
BspTNI GGTCTC 1 cut(s) 1277
BsrBI CCGCTC 1 cut(s) 569
BsrI ACTGG 1 cut(s) 1284
BssECI CCNNGG 4 cut(s) 168, 696, 1072, 1153
BssMI GATC 3 cut(s) 197, 800, 990
BssT1I CCWWGG 2 cut(s) 168, 1072
Bst2UI CCWGG 1 cut(s) 1155
Bst4CI ACNGT 4 cut(s) 598, 1025, 1175, 1390
Bst6I CTCTTC 6 cut(s) 64, 455, 525, 539, 959, 1360
BstC8I GCNNGC 1 cut(s) 285
BstDEI CTNAG 5 cut(s) 10, 294, 513, 528, 558
BstDSI CCRYGG 1 cut(s) 1072
BstF5I GGATG 5 cut(s) 140, 742, 817, 913, 993
BstFNI CGCG 2 cut(s) 429, 1255
BstHHI GCGC 1 cut(s) 429
BstKTI GATC 3 cut(s) 200, 803, 993
BstMAI GTCTC 7 cut(s) 129, 157, 554, 649, 773, 834, 1277
BstMBI GATC 3 cut(s) 197, 800, 990
BstMCI CGRYCG 1 cut(s) 238
BstMWI GCNNNNNNNGC 6 cut(s) 314, 415, 424, 435, 524, 1235
BstNI CCWGG 1 cut(s) 1155
BstSCI CCNGG 2 cut(s) 204, 1153
BstSFI CTRYAG 2 cut(s) 588, 1207
BstSLI GKGCMC 1 cut(s) 607
BstUI CGCG 2 cut(s) 429, 1255
BstV1I GCAGC 4 cut(s) 17, 1016, 1024, 1080
BstV2I GAAGAC 1 cut(s) 474
BstX2I RGATCY 2 cut(s) 197, 800
BstYI RGATCY 2 cut(s) 197, 800
Bsu36I CCTNAGG 1 cut(s) 10
BsuRI GGCC 3 cut(s) 191, 209, 445
BtgI CCRYGG 1 cut(s) 1072
BtgZI GCGATG 1 cut(s) 148
BtsCI GGATG 5 cut(s) 140, 742, 817, 913, 993
BtsIMutI CAGTG 4 cut(s) 1030, 1141, 1277, 1395
Cac8I GCNNGC 1 cut(s) 285
CaiI CAGNNNCTG 1 cut(s) 596
CfoI GCGC 1 cut(s) 429
Cfr13I GGNCC 6 cut(s) 172, 208, 443, 812, 982, 1163
Csp6I GTAC 1 cut(s) 266
CviAII CATG 6 cut(s) 187, 578, 829, 959, 1073, 1189
CviQI GTAC 1 cut(s) 266
DdeI CTNAG 5 cut(s) 10, 294, 513, 528, 558
DpnI GATC 3 cut(s) 199, 802, 992
DpnII GATC 3 cut(s) 197, 800, 990
DraI TTTAAA 1 cut(s) 1183
DraIII CACNNNGTG 1 cut(s) 853
DrdI GACNNNNNNGTC 1 cut(s) 980
DseDI GACNNNNNNGTC 1 cut(s) 980
EaeI YGGCCR 1 cut(s) 189
Eam1104I CTCTTC 6 cut(s) 64, 455, 525, 539, 959, 1360
EarI CTCTTC 6 cut(s) 64, 455, 525, 539, 959, 1360
Ecl136II GAGCTC 1 cut(s) 488
Eco130I CCWWGG 2 cut(s) 168, 1072
Eco24I GRGCYC 1 cut(s) 490
Eco31I GGTCTC 1 cut(s) 1277
Eco47I GGWCC 4 cut(s) 172, 812, 982, 1163
Eco53kI GAGCTC 1 cut(s) 488
Eco57I CTGAAG 3 cut(s) 30, 768, 1342
Eco81I CCTNAGG 1 cut(s) 10
Eco88I CYCGRG 2 cut(s) 1166, 1307
EcoICRI GAGCTC 1 cut(s) 488
EcoO109I RGGNCCY 3 cut(s) 172, 443, 812
EcoRII CCWGG 1 cut(s) 1153
EcoT14I CCWWGG 2 cut(s) 168, 1072
EcoT38I GRGCYC 1 cut(s) 490
ErhI CCWWGG 2 cut(s) 168, 1072
Esp3I CGTCTC 2 cut(s) 129, 157
FaeI CATG 6 cut(s) 190, 581, 832, 962, 1076, 1192
FalI AAGNNNNNCTT 2 cut(s) 432, 464
FaqI GGGAC 4 cut(s) 963, 1206, 1305, 1351
FatI CATG 6 cut(s) 186, 577, 828, 958, 1072, 1188
FauI CCCGC 5 cut(s) 183, 562, 802, 890, 1000
Fnu4HI GCNGC 5 cut(s) 6, 192, 1005, 1038, 1094
FokI GGATG 5 cut(s) 127, 749, 804, 920, 1000
FriOI GRGCYC 1 cut(s) 490
Fsp4HI GCNGC 5 cut(s) 6, 192, 1005, 1038, 1094
FspBI CTAG 1 cut(s) 1298
GlaI GCGC 1 cut(s) 428
GluI GCNGC 5 cut(s) 6, 192, 1005, 1038, 1094
GsuI CTGGAG 2 cut(s) 1176, 1301
HaeIII GGCC 3 cut(s) 191, 209, 445
HapII CCGG 4 cut(s) 195, 206, 905, 985
HhaI GCGC 1 cut(s) 429
Hin1II CATG 6 cut(s) 190, 581, 832, 962, 1076, 1192
Hin6I GCGC 1 cut(s) 427
HinP1I GCGC 1 cut(s) 427
HincII GTYRAC 1 cut(s) 575
HindII GTYRAC 1 cut(s) 575
HinfI GANTC 9 cut(s) 227, 302, 357, 475, 708, 951, 1011, 1158, 1266
HpaII CCGG 4 cut(s) 195, 206, 905, 985
HphI GGTGA 3 cut(s) 78, 712, 778
Hpy166II GTNNAC 2 cut(s) 575, 712
Hpy188III TCNNGA 9 cut(s) 340, 361, 644, 717, 985, 1243, 1309, 1351, 1403
Hpy8I GTNNAC 2 cut(s) 575, 712
Hpy99I CGWCG 2 cut(s) 332, 1223
HpyAV CCTTC 6 cut(s) 63, 100, 154, 358, 434, 727
HpyCH4III ACNGT 4 cut(s) 598, 1025, 1175, 1390
HpyCH4V TGCA 5 cut(s) 159, 283, 401, 1096, 1139
HpyF10VI GCNNNNNNNGC 6 cut(s) 314, 415, 424, 435, 524, 1235
HpyF3I CTNAG 5 cut(s) 10, 294, 513, 528, 558
Hsp92II CATG 6 cut(s) 190, 581, 832, 962, 1076, 1192
HspAI GCGC 1 cut(s) 427
Kpn2I TCCGGA 1 cut(s) 984
Kzo9I GATC 3 cut(s) 197, 800, 990
LguI GCTCTTC 1 cut(s) 525
LmnI GCTCC 6 cut(s) 55, 134, 415, 485, 566, 1076
Lsp1109I GCAGC 4 cut(s) 17, 1016, 1024, 1080
LweI GCATC 1 cut(s) 727
MaeI CTAG 1 cut(s) 1298
MaeIII GTNAC 2 cut(s) 766, 1085
MalI GATC 3 cut(s) 199, 802, 992
MbiI CCGCTC 1 cut(s) 569
MboI GATC 3 cut(s) 197, 800, 990
MfeI CAATTG 1 cut(s) 68
MflI RGATCY 2 cut(s) 197, 800
MhlI GDGCHC 4 cut(s) 490, 607, 643, 1173
MluCI AATT 2 cut(s) 68, 962
MlyI GAGTC 3 cut(s) 717, 945, 1167
MmeI TCCRAC 3 cut(s) 864, 1141, 1212
MroI TCCGGA 1 cut(s) 984
MseI TTAA 2 cut(s) 498, 1182
MspA1I CMGCKG 2 cut(s) 1007, 1362
MspI CCGG 4 cut(s) 195, 206, 905, 985
MspR9I CCNGG 2 cut(s) 206, 1155
MunI CAATTG 1 cut(s) 68
Mva1269I GAATGC 1 cut(s) 684
MvaI CCWGG 1 cut(s) 1155
MvnI CGCG 2 cut(s) 429, 1255
MwoI GCNNNNNNNGC 6 cut(s) 314, 415, 424, 435, 524, 1235
NciI CCSGG 1 cut(s) 206
NcoI CCATGG 1 cut(s) 1072
NdeII GATC 3 cut(s) 197, 800, 990
NlaIII CATG 6 cut(s) 190, 581, 832, 962, 1076, 1192
NlaIV GGNNCC 5 cut(s) 16, 174, 694, 813, 1165
NmeAIII GCCGAG 1 cut(s) 721
NmuCI GTSAC 1 cut(s) 766
PaeR7I CTCGAG 1 cut(s) 1307
PciSI GCTCTTC 1 cut(s) 525
PctI GAATGC 1 cut(s) 684
PfeI GAWTC 6 cut(s) 227, 302, 357, 475, 1011, 1266
PkrI GCNGC 5 cut(s) 7, 193, 1006, 1039, 1095
PleI GAGTC 3 cut(s) 716, 945, 1166
PpsI GAGTC 3 cut(s) 716, 945, 1166
PpuMI RGGWCCY 2 cut(s) 172, 812
Psp124BI GAGCTC 1 cut(s) 490
Psp5II RGGWCCY 2 cut(s) 172, 812
Psp6I CCWGG 1 cut(s) 1153
PspGI CCWGG 1 cut(s) 1153
PspN4I GGNNCC 5 cut(s) 16, 174, 694, 813, 1165
PspPI GGNCC 6 cut(s) 172, 208, 443, 812, 982, 1163
PspPPI RGGWCCY 2 cut(s) 172, 812
PstNI CAGNNNCTG 1 cut(s) 596
PsuI RGATCY 2 cut(s) 197, 800
RsaI GTAC 1 cut(s) 267
RsaNI GTAC 1 cut(s) 266
SacI GAGCTC 1 cut(s) 490
SapI GCTCTTC 1 cut(s) 525
SaqAI TTAA 2 cut(s) 498, 1182
SatI GCNGC 5 cut(s) 6, 192, 1005, 1038, 1094
Sau3AI GATC 3 cut(s) 197, 800, 990
Sau96I GGNCC 6 cut(s) 172, 208, 443, 812, 982, 1163
SchI GAGTC 3 cut(s) 717, 945, 1167
ScrFI CCNGG 2 cut(s) 206, 1155
SduI GDGCHC 4 cut(s) 490, 607, 643, 1173
SfaNI GCATC 1 cut(s) 727
SfcI CTRYAG 2 cut(s) 588, 1207
Sfr274I CTCGAG 1 cut(s) 1307
SinI GGWCC 4 cut(s) 172, 812, 982, 1163
SlaI CTCGAG 1 cut(s) 1307
SmlI CTYRAG 2 cut(s) 642, 1307
SmoI CTYRAG 2 cut(s) 642, 1307
Sse9I AATT 2 cut(s) 68, 962
SspMI CTAG 1 cut(s) 1298
SstI GAGCTC 1 cut(s) 490
StyD4I CCNGG 2 cut(s) 204, 1153
StyI CCWWGG 2 cut(s) 168, 1072
TaaI ACNGT 4 cut(s) 598, 1025, 1175, 1390
TaqI TCGA 1 cut(s) 1308
TaqII GACCGA 1 cut(s) 224
TasI AATT 2 cut(s) 68, 962
TauI GCSGC 1 cut(s) 194
TfiI GAWTC 6 cut(s) 227, 302, 357, 475, 1011, 1266
Tru1I TTAA 2 cut(s) 498, 1182
Tru9I TTAA 2 cut(s) 498, 1182
TscAI CASTG 4 cut(s) 1030, 1141, 1284, 1395
TseFI GTSAC 1 cut(s) 766
TseI GCWGC 4 cut(s) 5, 1004, 1037, 1093
Tsp45I GTSAC 1 cut(s) 766
TspDTI ATGAA 1 cut(s) 975
TspGWI ACGGA 3 cut(s) 28, 139, 428
TspRI CASTG 4 cut(s) 1030, 1141, 1284, 1395
VpaK11BI GGWCC 4 cut(s) 172, 812, 982, 1163
XapI RAATTY 1 cut(s) 962
XhoI CTCGAG 1 cut(s) 1307
XspI CTAG 1 cut(s) 1298
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.