Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0009479

Physical Location & Seq

Genomic Coordinates Reverse (-)

39014398 .. 39016896

Gene Structure 2499 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G019520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGGGGAGCGAGAAAAAGGGAGTTGGACCTCTAGGGGGACGCCCTCACATTTACCTGAAGAGGGAAGATCTTAACCATACCGGGGCACACAAGATCAACAATGCTGTTGGCCAAGCTTTGCTCGCTAAGCGGTTGGGCAAGAAACGCATTATTGCTGAAACTGGGGCAGGTCAACATGGAGTTGCCACTGCAACTGTTTGTGCTCGGTTTGGGTTGCAATGCATTATTTACATGGGTGCCCAAGATATGGAAAGGCAAGCCCTCAACGTTTTCAGAATGCGGCTTCTTGGCGCTAAAGTTAAGGCTGTTCATTCTGGAACAGCAACACTAAAGGATGCTACTTCAGAAGCTATAAGGGACTGGGTAACTAATGTCGAGACAACTCATTATATTTTGGGCTCTATTGCTGGCCCTCATCCATACCCTATGATGGTTCGCGATTTCCACAAGGTGATCGGTGGAAAGCCAGATGTGCTAGTTGCTTGTGTAGGTGGAGGATCAAACGCTATGGGACTCTTCCATGAGTTCGTTGAAGACAAAGATATTCGATTGATAGGAGTAGAAGCTGCAGGGTTTGGATTGGATAGTGGCAAGCATGCTGCAACTTTGACAAAAGGTGATGTTGGTGTTCTGCACGGAGCTATGAGCTACTTGTTACAGGATGAAGATGGCCAAATTATTGAGCCTCATTCTATAAGTGCAGGCTTAGATTATCCTGGGGTTGGACCGGAGCACAGTTTTCTGAAAGACTTGGGGCGTGTTGAGTACTACAGCGTTACTGACGATAAAGCATTGGAAGCTTTTAAAAAATTGTCACAACTTGAGGGAATAATTCCAGCTTTGGAGACCTCTCATGCACTAGCCTACTTAGAAAAGTTGTGTCCTACTCTTCCTAATGGGGCAAAGGTCGTCCTTAACTGCAGTGGCAGAGGGGATAAGGATGTTCATACTGCCATCAAGCACTTGCAGGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000162 GO:0003674 GO:0003824 GO:0004834 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006082 GO:0006520 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009308 GO:0009309 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009651 GO:0009683 GO:0009684 GO:0009850 GO:0009851 GO:0009941 GO:0009987 GO:0010817 GO:0016020 GO:0016053 GO:0016829 GO:0016835 GO:0016836 GO:0018130 GO:0019438 GO:0019752 GO:0019904 GO:0031967 GO:0031975 GO:0032787 GO:0034641 GO:0034754 GO:0042401 GO:0042430 GO:0042435 GO:0042445 GO:0042446 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046219 GO:0046394 GO:0046483 GO:0050896 GO:0065007 GO:0065008 GO:0071704 GO:0071944 GO:0072330 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00260 ko00400 ko01100 ko01110 ko01130 ko01230 map00260 map00400 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

PALP

Protein Analysis

324

Amino Acids

34.67

Weight (kDa)

7.74

Isoelectric Point (pI)

23.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PALP	PF00291	12 - 309	1.4e-40	Pyridoxal-phosphate dependent enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009479)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27070 AT5G54810
fragaria_vesca	FvH4_2g15220 FvH4_3g22100
malus_domestica	MD03G1208800.v1.1 MD11G1223500.v1.1
prunus_persica	Prupe.4G207900_v2.0.a1
pyrus_communis	pycom03g15780 pycom11g19710
rosa_chinensis	RchiOBHm_Chr5g0037911 RchiOBHm_Chr6g0277971
rosa_laevigata	RLG00000033822
rosa_multiflora	Rmu_sc0001474.1_g000007 Rmu_sc0005416.1_g000042
rosa_roxburghii	Rroxscaffold_1G00042990 Rroxscaffold_7G00190640
rosa_rugosa	Rorug05G0169100
rosa_samantha	Rh5AG257600 Rh6CG230100 Rh6DG220900
rosa_wichuraiana	Rw5G023880 Rw6G019520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	958
Acc36I	ACCTGC	2 cut(s)	158, 958
AccB1I	GGYRCC	1 cut(s)	236
AccB7I	CCANNNNNTGG	1 cut(s)	247
AccII	CGCG	1 cut(s)	438
AciI	CCGC	2 cut(s)	130, 280
AclI	AACGTT	1 cut(s)	267
AclWI	GGATC	1 cut(s)	505
AcoI	YGGCCR	2 cut(s)	109, 670
AcuI	CTGAAG	2 cut(s)	77, 327
AcyI	GRCGYC	1 cut(s)	40
AdeI	CACNNNGTG	1 cut(s)	451
AfaI	GTAC	1 cut(s)	767
AfiI	CCNNNNNNNGG	6 cut(s)	35, 61, 82, 247, 430, 722
AgsI	TTSAA	1 cut(s)	533
AjnI	CCWGG	1 cut(s)	715
AluBI	AGCT	7 cut(s)	116, 350, 566, 641, 648, 800, 839
AluI	AGCT	7 cut(s)	116, 350, 566, 641, 648, 800, 839
Alw21I	GWGCWC	2 cut(s)	205, 735
Alw26I	GTCTC	2 cut(s)	371, 839
AlwI	GGATC	1 cut(s)	505
AoxI	GGCC	3 cut(s)	109, 409, 670
ApeKI	GCWGC	2 cut(s)	566, 599
AspLEI	GCGC	1 cut(s)	293
AspS9I	GGNCC	3 cut(s)	26, 410, 725
AsuC2I	CCSGG	1 cut(s)	82
AsuHPI	GGTGA	2 cut(s)	463, 629
AvaII	GGWCC	2 cut(s)	26, 725
BaeGI	GKGCMC	2 cut(s)	88, 241
BalI	TGGCCA	2 cut(s)	111, 672
BanI	GGYRCC	1 cut(s)	236
BanII	GRGCYC	1 cut(s)	401
BbsI	GAAGAC	1 cut(s)	540
Bbv12I	GWGCWC	2 cut(s)	205, 735
BbvI	GCAGC	2 cut(s)	553, 586
BccI	CCATC	3 cut(s)	424, 662, 962
BciT130I	CCWGG	1 cut(s)	717
BcnI	CCSGG	1 cut(s)	82
BcoDI	GTCTC	2 cut(s)	371, 839
BfaI	CTAG	3 cut(s)	32, 476, 860
BfmI	CTRYAG	3 cut(s)	567, 769, 919
BfoI	RGCGCY	1 cut(s)	294
BfuAI	ACCTGC	2 cut(s)	158, 958
BglII	AGATCT	1 cut(s)	67
BisI	GCNGC	3 cut(s)	281, 567, 600
BlpI	GCTNAGC	1 cut(s)	126
BlsI	GCNGC	3 cut(s)	282, 568, 601
BmcAI	AGTACT	1 cut(s)	767
Bme1390I	CCNGG	2 cut(s)	82, 717
Bme18I	GGWCC	2 cut(s)	26, 725
BmgT120I	GGNCC	3 cut(s)	26, 410, 725
BmiI	GGNNCC	1 cut(s)	238
BmrFI	CCNGG	2 cut(s)	82, 717
BmrI	ACTGGG	2 cut(s)	171, 370
BmsI	GCATC	1 cut(s)	325
BmuI	ACTGGG	2 cut(s)	171, 370
BpiI	GAAGAC	1 cut(s)	540
Bpu1102I	GCTNAGC	1 cut(s)	126
BpuEI	CTTGAG	1 cut(s)	842
BpuMI	CCSGG	1 cut(s)	82
BsaHI	GRCGYC	1 cut(s)	40
BsaI	GGTCTC	1 cut(s)	839
BsaJI	CCNNGG	2 cut(s)	81, 716
BsaWI	WCCGGW	1 cut(s)	727
Bsc4I	CCNNNNNNNGG	6 cut(s)	35, 61, 82, 247, 430, 722
Bse1I	ACTGG	2 cut(s)	166, 365
Bse3DI	GCAATG	1 cut(s)	224
BseBI	CCWGG	1 cut(s)	717
BseDI	CCNNGG	2 cut(s)	81, 716
BseGI	GGATG	4 cut(s)	340, 415, 667, 946
BseLI	CCNNNNNNNGG	6 cut(s)	35, 61, 82, 247, 430, 722
BseMI	GCAATG	1 cut(s)	224
BseNI	ACTGG	2 cut(s)	166, 365
BseSI	GKGCMC	2 cut(s)	88, 241
BseXI	GCAGC	2 cut(s)	553, 586
BsgI	GTGCAG	2 cut(s)	617, 720
Bsh1236I	CGCG	1 cut(s)	438
BshFI	GGCC	3 cut(s)	111, 411, 672
BshNI	GGYRCC	1 cut(s)	236
BsiHKAI	GWGCWC	2 cut(s)	205, 735
BsiSI	CCGG	2 cut(s)	81, 728
BslFI	GGGAC	3 cut(s)	51, 371, 525
BslI	CCNNNNNNNGG	6 cut(s)	35, 61, 82, 247, 430, 722
BsmAI	GTCTC	2 cut(s)	371, 839
BsmFI	GGGAC	3 cut(s)	51, 371, 525
BsmI	GAATGC	1 cut(s)	282
BsnI	GGCC	3 cut(s)	111, 411, 672
Bso31I	GGTCTC	1 cut(s)	839
Bsp1286I	GDGCHC	5 cut(s)	88, 205, 241, 401, 735
Bsp143I	GATC	4 cut(s)	67, 93, 453, 497
Bsp1720I	GCTNAGC	1 cut(s)	126
Bsp68I	TCGCGA	1 cut(s)	438
BspACI	CCGC	2 cut(s)	130, 280
BspANI	GGCC	3 cut(s)	111, 411, 672
BspFNI	CGCG	1 cut(s)	438
BspLI	GGNNCC	1 cut(s)	238
BspMAI	CTGCAG	2 cut(s)	571, 923
BspMI	ACCTGC	2 cut(s)	158, 958
BspPI	GGATC	1 cut(s)	505
BspT107I	GGYRCC	1 cut(s)	236
BspTNI	GGTCTC	1 cut(s)	839
BsrDI	GCAATG	1 cut(s)	224
BsrI	ACTGG	2 cut(s)	166, 365
BssECI	CCNNGG	2 cut(s)	81, 716
BssMI	GATC	4 cut(s)	67, 93, 453, 497
BssNI	GRCGYC	1 cut(s)	40
Bst2UI	CCWGG	1 cut(s)	717
Bst4CI	ACNGT	2 cut(s)	196, 737
Bst6I	CTCTTC	3 cut(s)	53, 521, 894
BstACI	GRCGYC	1 cut(s)	40
BstC8I	GCNNGC	6 cut(s)	123, 258, 409, 593, 597, 703
BstDEI	CTNAG	3 cut(s)	126, 706, 868
BstF5I	GGATG	4 cut(s)	340, 415, 667, 946
BstFNI	CGCG	1 cut(s)	438
BstH2I	RGCGCY	1 cut(s)	294
BstHHI	GCGC	1 cut(s)	293
BstKTI	GATC	4 cut(s)	70, 96, 456, 500
BstMAI	GTCTC	2 cut(s)	371, 839
BstMBI	GATC	4 cut(s)	67, 93, 453, 497
BstMWI	GCNNNNNNNGC	5 cut(s)	122, 127, 144, 472, 797
BstNI	CCWGG	1 cut(s)	717
BstNSI	RCATGY	1 cut(s)	599
BstSCI	CCNGG	2 cut(s)	80, 715
BstSFI	CTRYAG	3 cut(s)	567, 769, 919
BstSLI	GKGCMC	2 cut(s)	88, 241
BstUI	CGCG	1 cut(s)	438
BstV1I	GCAGC	2 cut(s)	553, 586
BstV2I	GAAGAC	1 cut(s)	540
BstX2I	RGATCY	1 cut(s)	67
BstYI	RGATCY	1 cut(s)	67
BsuRI	GGCC	3 cut(s)	111, 411, 672
BtsCI	GGATG	4 cut(s)	340, 415, 667, 946
BtsI	GCAGTG	2 cut(s)	186, 928
BtsIMutI	CAGTG	2 cut(s)	186, 928
BtuMI	TCGCGA	1 cut(s)	438
BveI	ACCTGC	2 cut(s)	158, 958
Cac8I	GCNNGC	6 cut(s)	123, 258, 409, 593, 597, 703
CfoI	GCGC	1 cut(s)	293
Cfr13I	GGNCC	3 cut(s)	26, 410, 725
CseI	GACGC	1 cut(s)	48
Csp6I	GTAC	1 cut(s)	766
CviAII	CATG	5 cut(s)	176, 232, 521, 596, 854
CviQI	GTAC	1 cut(s)	766
DdeI	CTNAG	3 cut(s)	126, 706, 868
DpnI	GATC	4 cut(s)	69, 95, 455, 499
DpnII	GATC	4 cut(s)	67, 93, 453, 497
DraI	TTTAAA	1 cut(s)	805
DraIII	CACNNNGTG	1 cut(s)	451
EaeI	YGGCCR	2 cut(s)	109, 670
Eam1104I	CTCTTC	3 cut(s)	53, 521, 894
EarI	CTCTTC	3 cut(s)	53, 521, 894
Eco24I	GRGCYC	1 cut(s)	401
Eco31I	GGTCTC	1 cut(s)	839
Eco47I	GGWCC	2 cut(s)	26, 725
Eco57I	CTGAAG	2 cut(s)	77, 327
EcoRII	CCWGG	1 cut(s)	715
EcoT22I	ATGCAT	1 cut(s)	224
EcoT38I	GRGCYC	1 cut(s)	401
FaeI	CATG	5 cut(s)	179, 235, 524, 599, 857
FaqI	GGGAC	3 cut(s)	51, 371, 525
FatI	CATG	5 cut(s)	175, 231, 520, 595, 853
Fnu4HI	GCNGC	3 cut(s)	281, 567, 600
FokI	GGATG	4 cut(s)	347, 402, 674, 953
FriOI	GRGCYC	1 cut(s)	401
Fsp4HI	GCNGC	3 cut(s)	281, 567, 600
FspBI	CTAG	3 cut(s)	32, 476, 860
GlaI	GCGC	1 cut(s)	292
GluI	GCNGC	3 cut(s)	281, 567, 600
HaeII	RGCGCY	1 cut(s)	294
HaeIII	GGCC	3 cut(s)	111, 411, 672
HapII	CCGG	2 cut(s)	81, 728
HgaI	GACGC	1 cut(s)	48
HhaI	GCGC	1 cut(s)	293
Hin1I	GRCGYC	1 cut(s)	40
Hin1II	CATG	5 cut(s)	179, 235, 524, 599, 857
Hin6I	GCGC	1 cut(s)	291
HinP1I	GCGC	1 cut(s)	291
HincII	GTYRAC	1 cut(s)	173
HindII	GTYRAC	1 cut(s)	173
HindIII	AAGCTT	2 cut(s)	114, 798
HinfI	GANTC	1 cut(s)	513
HpaII	CCGG	2 cut(s)	81, 728
HphI	GGTGA	2 cut(s)	463, 629
Hpy166II	GTNNAC	1 cut(s)	173
Hpy188I	TCNGA	3 cut(s)	275, 346, 744
Hpy188III	TCNNGA	3 cut(s)	315, 376, 437
Hpy8I	GTNNAC	1 cut(s)	173
HpyCH4III	ACNGT	2 cut(s)	196, 737
HpyCH4IV	ACGT	1 cut(s)	267
HpyF10VI	GCNNNNNNNGC	5 cut(s)	122, 127, 144, 472, 797
HpyF3I	CTNAG	3 cut(s)	126, 706, 868
HpySE526I	ACGT	1 cut(s)	267
Hsp92I	GRCGYC	1 cut(s)	40
Hsp92II	CATG	5 cut(s)	179, 235, 524, 599, 857
HspAI	GCGC	1 cut(s)	291
Kzo9I	GATC	4 cut(s)	67, 93, 453, 497
LmnI	GCTCC	3 cut(s)	6, 638, 730
Lsp1109I	GCAGC	2 cut(s)	553, 586
LweI	GCATC	1 cut(s)	325
MaeI	CTAG	3 cut(s)	32, 476, 860
MaeII	ACGT	1 cut(s)	267
MaeIII	GTNAC	4 cut(s)	364, 654, 775, 813
MalI	GATC	4 cut(s)	69, 95, 455, 499
MboI	GATC	4 cut(s)	67, 93, 453, 497
MboII	GAAGA	6 cut(s)	70, 77, 508, 545, 677, 881
MflI	RGATCY	1 cut(s)	67
MhlI	GDGCHC	5 cut(s)	88, 205, 241, 401, 735
MlsI	TGGCCA	2 cut(s)	111, 672
MluCI	AATT	3 cut(s)	675, 809, 831
MluNI	TGGCCA	2 cut(s)	111, 672
MlyI	GAGTC	1 cut(s)	507
MmeI	TCCRAC	2 cut(s)	4, 703
Mox20I	TGGCCA	2 cut(s)	111, 672
Mph1103I	ATGCAT	1 cut(s)	224
MscI	TGGCCA	2 cut(s)	111, 672
MseI	TTAA	4 cut(s)	72, 300, 804, 915
Msp20I	TGGCCA	2 cut(s)	111, 672
MspI	CCGG	2 cut(s)	81, 728
MspR9I	CCNGG	2 cut(s)	82, 717
Mva1269I	GAATGC	1 cut(s)	282
MvaI	CCWGG	1 cut(s)	717
MvnI	CGCG	1 cut(s)	438
MwoI	GCNNNNNNNGC	5 cut(s)	122, 127, 144, 472, 797
NciI	CCSGG	1 cut(s)	82
NdeII	GATC	4 cut(s)	67, 93, 453, 497
NlaIII	CATG	5 cut(s)	179, 235, 524, 599, 857
NlaIV	GGNNCC	1 cut(s)	238
NmuCI	GTSAC	1 cut(s)	813
NruI	TCGCGA	1 cut(s)	438
NsiI	ATGCAT	1 cut(s)	224
NspI	RCATGY	1 cut(s)	599
PaeI	GCATGC	1 cut(s)	599
PaqCI	CACCTGC	1 cut(s)	958
PctI	GAATGC	1 cut(s)	282
PflMI	CCANNNNNTGG	1 cut(s)	247
PkrI	GCNGC	3 cut(s)	282, 568, 601
PleI	GAGTC	1 cut(s)	507
PpsI	GAGTC	1 cut(s)	507
Psp1406I	AACGTT	1 cut(s)	267
Psp6I	CCWGG	1 cut(s)	715
PspGI	CCWGG	1 cut(s)	715
PspN4I	GGNNCC	1 cut(s)	238
PspPI	GGNCC	3 cut(s)	26, 410, 725
PstI	CTGCAG	2 cut(s)	571, 923
PsuI	RGATCY	1 cut(s)	67
RruI	TCGCGA	1 cut(s)	438
RsaI	GTAC	1 cut(s)	767
RsaNI	GTAC	1 cut(s)	766
SaqAI	TTAA	4 cut(s)	72, 300, 804, 915
SatI	GCNGC	3 cut(s)	281, 567, 600
Sau3AI	GATC	4 cut(s)	67, 93, 453, 497
Sau96I	GGNCC	3 cut(s)	26, 410, 725
ScaI	AGTACT	1 cut(s)	767
SchI	GAGTC	1 cut(s)	507
ScrFI	CCNGG	2 cut(s)	82, 717
SduI	GDGCHC	5 cut(s)	88, 205, 241, 401, 735
SfaNI	GCATC	1 cut(s)	325
SfcI	CTRYAG	3 cut(s)	567, 769, 919
SinI	GGWCC	2 cut(s)	26, 725
SmlI	CTYRAG	1 cut(s)	821
SmoI	CTYRAG	1 cut(s)	821
SphI	GCATGC	1 cut(s)	599
Sse9I	AATT	3 cut(s)	675, 809, 831
SsiI	CCGC	2 cut(s)	130, 280
SspMI	CTAG	3 cut(s)	32, 476, 860
StyD4I	CCNGG	2 cut(s)	80, 715
TaaI	ACNGT	2 cut(s)	196, 737
TaiI	ACGT	1 cut(s)	270
TaqI	TCGA	2 cut(s)	375, 547
TasI	AATT	3 cut(s)	675, 809, 831
TatI	WGTACW	1 cut(s)	765
TauI	GCSGC	1 cut(s)	283
Tru1I	TTAA	4 cut(s)	72, 300, 804, 915
Tru9I	TTAA	4 cut(s)	72, 300, 804, 915
TscAI	CASTG	2 cut(s)	193, 928
TseFI	GTSAC	1 cut(s)	813
TseI	GCWGC	2 cut(s)	566, 599
Tsp45I	GTSAC	1 cut(s)	813
TspDTI	ATGAA	3 cut(s)	299, 678, 935
TspGWI	ACGGA	1 cut(s)	651
TspRI	CASTG	2 cut(s)	193, 928
Van91I	CCANNNNNTGG	1 cut(s)	247
VpaK11BI	GGWCC	2 cut(s)	26, 725
XceI	RCATGY	1 cut(s)	599
XspI	CTAG	3 cut(s)	32, 476, 860
ZrmI	AGTACT	1 cut(s)	767
Zsp2I	ATGCAT	1 cut(s)	224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.