FvH4_3g22100

tryptophan synthase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Reverse (-)
15129996 .. 15133585
3590 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g22100.t1

Sequence Viewer

Length: 1416 bp
ATGGCAGCCTCAACTGGCTCTACCACCACCGCTTGCAAAACCCACCTGAACCTAATCACCGCGCCGCTCTCTAAACCCTACTCCTCCCAACTCCCCTTCAAGTTCGGCAAATTTTCCTCCCGTGCCACCGCTCCTTCCTCCATCTCCTGCACCCTCGCCCGAGACGCCGCCGCTCCCCGCATGGACAGCAAGAGCGAAAACGGGTCGCTGGCGGGCCTGCCCCGACCCGATTCCTTCGGCCGCTACGGAAAGTACGGCGGCAAATACGTCCCGGAGACGCTAATGCACGCCCTCACCGAGCTCGAGGCCGCGTTTCACAAGCTCGCTGATGATGAAGATTTTCAGAAAGAGTTGAATGGCATTTTGAGGGACTATGTTGGCAGGGAAACTCCTCTCTATTTTGCAGAGCGGCTGACTGAACACTACAAACGCCCTAATGGTGAAGGGCCACACATTTACTTGAAGAGGGAGGATCTTAACCATACTGGTGCCCACAAGATCAACAATGCTGTTGCTCAAGCTCTGCTAGCTAAGAAACTGGGCAAGAAGCGCATTATTGCTGAGACTGGAGCAGGTCAGCATGGAGTTGCCACTGCAACCGTCTGTGCTCGGTTTGGATTGCAATGTATCATCTACATGGGTGCCCAAGATATGGAAAGACAAGCTCTCAATGTTTTCAGAATGCGGCTTCTTGGTGCTGAGGTCAGAGGAGTCCATGCTGGAACAGCCACATTGAAGGATGCCACTTCAGAAGCTATAAGAGACTGGGTTACCAACGTAGAGACAACCCATTATATTTTGGGCTCAGTTGCCGGTCCTCACCCATACCCTATGATGGTTCGTGATTTCCACAAAGTGATTGGTAAAGAAACAAGAAAACAGGCTTTGGAAAAGTGGGGTGGGAAACCAGATGTTTTAGTAGCTTGTGTAGGTGGCGGTTCGAATGCTATGGGACTTTTCCATGAGTTTGTGGAAGATAAGGAGGTTCGATTGATTGGGGTGGAAGCTGCAGGTTTTGGATTAGACAGTGGCAAACATGCTGCAACTTTAACCAAAGGAGATGTTGGAGTTCTACATGGAGCTATGAGTTACTTGTTACAGGATGAAGATGGCCAAATTATTGAGCCTCATTCTATAAGTGCAGGCTTGGATTACCCTGGAGTTGGACCGGAGCATAGTTTTTTAAAAGATTTGGGGCGAGCTGAATACCATAGCATTACTGATGACGAAGCATTGGAGGCTTTTAAAAGGTTGTCCCGGTTGGAGGGAATCATTCCAGCTCTGGAGACTTCTCATGCACTGGCGTACCTAGAAAAACTCTGCCCAACTCTTCCTGATGGGGCTAAAGTTGTGCTTAACTGTAGTGGCAGAGGGGACAAAGATGTTCATACTGCCATCAAACACTTGAAGGTTTGA

Protein Analysis

472

Amino Acids

51.04

Weight (kDa)

7.34

Isoelectric Point (pI)

30.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PALP PF00291 127 - 456 2e-44 Pyridoxal-phosphate dependent enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 563, 1001
AccB1I GGYRCC 2 cut(s) 488, 641
AccB7I CCANNNNNTGG 1 cut(s) 652
AccBSI CCGCTC 4 cut(s) 67, 131, 173, 409
AccII CGCG 2 cut(s) 62, 311
AclWI GGATC 1 cut(s) 480
AcoI YGGCCR 2 cut(s) 238, 1111
AcsI RAATTY 1 cut(s) 110
AcuI CTGAAG 1 cut(s) 732
AcyI GRCGYC 1 cut(s) 165
AdeI CACNNNGTG 1 cut(s) 856
AfaI GTAC 2 cut(s) 254, 1307
AfiI CCNNNNNNNGG 4 cut(s) 652, 835, 1163, 1264
AgsI TTSAA 5 cut(s) 100, 355, 463, 736, 1408
AjnI CCWGG 1 cut(s) 1156
Alw21I GWGCWC 2 cut(s) 303, 610
Alw26I GTCTC 6 cut(s) 156, 269, 557, 756, 776, 1280
AlwI GGATC 1 cut(s) 480
Ama87I CYCGRG 2 cut(s) 159, 302
AoxI GGCC 5 cut(s) 214, 238, 306, 446, 1111
ApeKI GCWGC 3 cut(s) 5, 1007, 1040
ApoI RAATTY 1 cut(s) 110
Asp700I GAANNNNTTC 1 cut(s) 339
AspLEI GCGC 2 cut(s) 64, 552
AspS9I GGNCC 4 cut(s) 214, 446, 815, 1166
AsuC2I CCSGG 2 cut(s) 272, 1258
AsuHPI GGTGA 4 cut(s) 49, 286, 452, 812
AsuII TTCGAA 1 cut(s) 941
AsuNHI GCTAGC 1 cut(s) 526
AvaI CYCGRG 2 cut(s) 159, 302
AvaII GGWCC 2 cut(s) 815, 1166
BaeGI GKGCMC 2 cut(s) 493, 646
BaeI ACNNNNGTAYC 2 cut(s) 1289, 1322
BalI TGGCCA 1 cut(s) 1113
BanI GGYRCC 2 cut(s) 488, 641
BanII GRGCYC 2 cut(s) 303, 806
Bbv12I GWGCWC 2 cut(s) 303, 610
BbvCI CCTCAGC 1 cut(s) 699
BbvI GCAGC 3 cut(s) 17, 994, 1027
BccI CCATC 5 cut(s) 149, 829, 1103, 1331, 1403
BceAI ACGGC 1 cut(s) 271
BciT130I CCWGG 1 cut(s) 1158
BcnI CCSGG 2 cut(s) 272, 1258
BcoDI GTCTC 6 cut(s) 156, 269, 557, 756, 776, 1280
BfaI CTAG 2 cut(s) 527, 1310
BfmI CTRYAG 2 cut(s) 1008, 1360
BfuAI ACCTGC 2 cut(s) 563, 1001
Bme1390I CCNGG 3 cut(s) 272, 1158, 1258
Bme18I GGWCC 2 cut(s) 815, 1166
BmeT110I CYCGRG 2 cut(s) 159, 302
BmgT120I GGNCC 4 cut(s) 214, 446, 815, 1166
BmiI GGNNCC 2 cut(s) 490, 643
BmrFI CCNGG 3 cut(s) 272, 1158, 1258
BmrI ACTGGG 2 cut(s) 548, 775
BmsI GCATC 1 cut(s) 730
BmtI GCTAGC 1 cut(s) 530
BmuI ACTGGG 2 cut(s) 548, 775
BpmI CTGGAG 3 cut(s) 588, 1179, 1304
Bpu10I CCTNAGC 1 cut(s) 699
Bpu14I TTCGAA 1 cut(s) 941
BpuEI CTTGAG 1 cut(s) 501
BpuMI CCSGG 2 cut(s) 272, 1258
BsaHI GRCGYC 1 cut(s) 165
BsaJI CCNNGG 1 cut(s) 1156
BsaWI WCCGGW 1 cut(s) 1168
Bsc4I CCNNNNNNNGG 4 cut(s) 652, 835, 1163, 1264
Bse118I RCCGGY 1 cut(s) 812
Bse1I ACTGG 6 cut(s) 19, 490, 543, 571, 770, 1305
Bse3DI GCAATG 1 cut(s) 629
BseBI CCWGG 1 cut(s) 1158
BseDI CCNNGG 1 cut(s) 1156
BseGI GGATG 2 cut(s) 745, 1108
BseLI CCNNNNNNNGG 4 cut(s) 652, 835, 1163, 1264
BseMI GCAATG 1 cut(s) 629
BseMII CTCAG 3 cut(s) 552, 690, 819
BseNI ACTGG 6 cut(s) 19, 490, 543, 571, 770, 1305
BseRI GAGGAG 3 cut(s) 73, 381, 723
BseSI GKGCMC 2 cut(s) 493, 646
BseX3I CGGCCG 1 cut(s) 238
BseXI GCAGC 3 cut(s) 17, 994, 1027
BsgI GTGCAG 2 cut(s) 133, 1161
Bsh1236I CGCG 2 cut(s) 62, 311
Bsh1285I CGRYCG 1 cut(s) 241
BshFI GGCC 5 cut(s) 216, 240, 308, 448, 1113
BshNI GGYRCC 2 cut(s) 488, 641
BsiEI CGRYCG 1 cut(s) 241
BsiHKAI GWGCWC 2 cut(s) 303, 610
BsiHKCI CYCGRG 2 cut(s) 159, 302
BsiSI CCGG 4 cut(s) 272, 813, 1169, 1258
BslFI GGGAC 5 cut(s) 254, 383, 966, 1240, 1388
BslI CCNNNNNNNGG 4 cut(s) 652, 835, 1163, 1264
BsmAI GTCTC 6 cut(s) 156, 269, 557, 756, 776, 1280
BsmBI CGTCTC 2 cut(s) 156, 269
BsmFI GGGAC 5 cut(s) 254, 383, 966, 1240, 1388
BsmI GAATGC 2 cut(s) 687, 949
BsnI GGCC 5 cut(s) 216, 240, 308, 448, 1113
BsoBI CYCGRG 2 cut(s) 159, 302
Bsp119I TTCGAA 1 cut(s) 941
Bsp1286I GDGCHC 5 cut(s) 303, 493, 610, 646, 806
Bsp143I GATC 2 cut(s) 472, 498
BspANI GGCC 5 cut(s) 216, 240, 308, 448, 1113
BspCNI CTCAG 3 cut(s) 553, 691, 818
BspFNI CGCG 2 cut(s) 62, 311
BspLI GGNNCC 2 cut(s) 490, 643
BspMAI CTGCAG 1 cut(s) 1012
BspMI ACCTGC 2 cut(s) 563, 1001
BspOI GCTAGC 1 cut(s) 530
BspPI GGATC 1 cut(s) 480
BspT104I TTCGAA 1 cut(s) 941
BspT107I GGYRCC 2 cut(s) 488, 641
BsrBI CCGCTC 4 cut(s) 67, 131, 173, 409
BsrDI GCAATG 1 cut(s) 629
BsrFI RCCGGY 1 cut(s) 812
BsrI ACTGG 6 cut(s) 19, 490, 543, 571, 770, 1305
BssAI RCCGGY 1 cut(s) 812
BssECI CCNNGG 1 cut(s) 1156
BssMI GATC 2 cut(s) 472, 498
BssNI GRCGYC 1 cut(s) 165
Bst2UI CCWGG 1 cut(s) 1158
Bst4CI ACNGT 3 cut(s) 601, 1028, 1361
Bst6I CTCTTC 2 cut(s) 458, 1335
BstACI GRCGYC 1 cut(s) 165
BstBI TTCGAA 1 cut(s) 941
BstC8I GCNNGC 9 cut(s) 34, 210, 214, 218, 288, 324, 528, 1144, 1200
BstDEI CTNAG 4 cut(s) 531, 561, 699, 805
BstEII GGTNACC 1 cut(s) 769
BstF5I GGATG 2 cut(s) 745, 1108
BstFNI CGCG 2 cut(s) 62, 311
BstHHI GCGC 2 cut(s) 64, 552
BstKTI GATC 2 cut(s) 475, 501
BstMAI GTCTC 6 cut(s) 156, 269, 557, 756, 776, 1280
BstMBI GATC 2 cut(s) 472, 498
BstMCI CGRYCG 1 cut(s) 241
BstMWI GCNNNNNNNGC 6 cut(s) 164, 186, 527, 549, 725, 1238
BstNI CCWGG 1 cut(s) 1158
BstNSI RCATGY 1 cut(s) 1040
BstPI GGTNACC 1 cut(s) 769
BstSCI CCNGG 3 cut(s) 270, 1156, 1256
BstSFI CTRYAG 2 cut(s) 1008, 1360
BstSLI GKGCMC 2 cut(s) 493, 646
BstUI CGCG 2 cut(s) 62, 311
BstV1I GCAGC 3 cut(s) 17, 994, 1027
BstX2I RGATCY 1 cut(s) 472
BstYI RGATCY 1 cut(s) 472
BstZI CGGCCG 1 cut(s) 238
BsuRI GGCC 5 cut(s) 216, 240, 308, 448, 1113
BtsCI GGATG 2 cut(s) 745, 1108
BtsI GCAGTG 1 cut(s) 591
BtsIMutI CAGTG 3 cut(s) 591, 1033, 1298
BveI ACCTGC 2 cut(s) 563, 1001
Cac8I GCNNGC 9 cut(s) 34, 210, 214, 218, 288, 324, 528, 1144, 1200
CfoI GCGC 2 cut(s) 64, 552
Cfr10I RCCGGY 1 cut(s) 812
Cfr13I GGNCC 4 cut(s) 214, 446, 815, 1166
CseI GACGC 2 cut(s) 173, 286
Csp6I GTAC 2 cut(s) 253, 1306
CviAII CATG 8 cut(s) 181, 581, 637, 716, 962, 1037, 1076, 1295
CviQI GTAC 2 cut(s) 253, 1306
DdeI CTNAG 4 cut(s) 531, 561, 699, 805
DpnI GATC 2 cut(s) 474, 500
DpnII GATC 2 cut(s) 472, 498
DraI TTTAAA 2 cut(s) 1185, 1246
DraIII CACNNNGTG 1 cut(s) 856
EaeI YGGCCR 2 cut(s) 238, 1111
EagI CGGCCG 1 cut(s) 238
Eam1104I CTCTTC 2 cut(s) 458, 1335
EarI CTCTTC 2 cut(s) 458, 1335
Ecl136II GAGCTC 1 cut(s) 301
EclXI CGGCCG 1 cut(s) 238
Eco24I GRGCYC 2 cut(s) 303, 806
Eco47I GGWCC 2 cut(s) 815, 1166
Eco52I CGGCCG 1 cut(s) 238
Eco53kI GAGCTC 1 cut(s) 301
Eco57I CTGAAG 1 cut(s) 732
Eco88I CYCGRG 2 cut(s) 159, 302
Eco91I GGTNACC 1 cut(s) 769
EcoICRI GAGCTC 1 cut(s) 301
EcoO65I GGTNACC 1 cut(s) 769
EcoRII CCWGG 1 cut(s) 1156
EcoT38I GRGCYC 2 cut(s) 303, 806
Esp3I CGTCTC 2 cut(s) 156, 269
FaeI CATG 8 cut(s) 184, 584, 640, 719, 965, 1040, 1079, 1298
FalI AAGNNNNNCTT 2 cut(s) 1338, 1370
FaqI GGGAC 5 cut(s) 254, 383, 966, 1240, 1388
FatI CATG 8 cut(s) 180, 580, 636, 715, 961, 1036, 1075, 1294
FauI CCCGC 2 cut(s) 185, 205
FokI GGATG 2 cut(s) 752, 1115
FriOI GRGCYC 2 cut(s) 303, 806
FspBI CTAG 2 cut(s) 527, 1310
GlaI GCGC 2 cut(s) 63, 551
GsuI CTGGAG 3 cut(s) 588, 1179, 1304
HaeIII GGCC 5 cut(s) 216, 240, 308, 448, 1113
HapII CCGG 4 cut(s) 272, 813, 1169, 1258
HgaI GACGC 2 cut(s) 173, 286
HhaI GCGC 2 cut(s) 64, 552
Hin1I GRCGYC 1 cut(s) 165
Hin1II CATG 8 cut(s) 184, 584, 640, 719, 965, 1040, 1079, 1298
Hin6I GCGC 2 cut(s) 62, 550
HinP1I GCGC 2 cut(s) 62, 550
HinfI GANTC 3 cut(s) 230, 711, 1269
HpaII CCGG 4 cut(s) 272, 813, 1169, 1258
HphI GGTGA 4 cut(s) 49, 286, 452, 812
Hpy188I TCNGA 4 cut(s) 345, 680, 707, 751
Hpy188III TCNNGA 3 cut(s) 842, 1283, 1334
HpyAV CCTTC 6 cut(s) 106, 144, 244, 437, 730, 1402
HpyCH4III ACNGT 3 cut(s) 601, 1028, 1361
HpyCH4IV ACGT 2 cut(s) 267, 777
HpyF10VI GCNNNNNNNGC 6 cut(s) 164, 186, 527, 549, 725, 1238
HpyF3I CTNAG 4 cut(s) 531, 561, 699, 805
HpySE526I ACGT 2 cut(s) 267, 777
Hsp92I GRCGYC 1 cut(s) 165
Hsp92II CATG 8 cut(s) 184, 584, 640, 719, 965, 1040, 1079, 1298
HspAI GCGC 2 cut(s) 62, 550
Kzo9I GATC 2 cut(s) 472, 498
LmnI GCTCC 5 cut(s) 136, 178, 569, 1079, 1171
Lsp1109I GCAGC 3 cut(s) 17, 994, 1027
LweI GCATC 1 cut(s) 730
MaeI CTAG 2 cut(s) 527, 1310
MaeII ACGT 2 cut(s) 267, 777
MaeIII GTNAC 3 cut(s) 769, 1088, 1095
MalI GATC 2 cut(s) 474, 500
MbiI CCGCTC 4 cut(s) 67, 131, 173, 409
MboI GATC 2 cut(s) 472, 498
MboII GAAGA 5 cut(s) 347, 475, 986, 1118, 1322
MflI RGATCY 1 cut(s) 472
MhlI GDGCHC 5 cut(s) 303, 493, 610, 646, 806
MlsI TGGCCA 1 cut(s) 1113
MluCI AATT 2 cut(s) 110, 1116
MluNI TGGCCA 1 cut(s) 1113
MlyI GAGTC 1 cut(s) 720
MmeI TCCRAC 3 cut(s) 1045, 1144, 1242
Mox20I TGGCCA 1 cut(s) 1113
MroXI GAANNNNTTC 1 cut(s) 339
MscI TGGCCA 1 cut(s) 1113
MseI TTAA 5 cut(s) 477, 1049, 1184, 1245, 1356
MslI CAYNNNNRTG 2 cut(s) 486, 635
Msp20I TGGCCA 1 cut(s) 1113
MspI CCGG 4 cut(s) 272, 813, 1169, 1258
MspR9I CCNGG 3 cut(s) 272, 1158, 1258
Mva1269I GAATGC 2 cut(s) 687, 949
MvaI CCWGG 1 cut(s) 1158
MvnI CGCG 2 cut(s) 62, 311
MwoI GCNNNNNNNGC 6 cut(s) 164, 186, 527, 549, 725, 1238
NciI CCSGG 2 cut(s) 272, 1258
NdeII GATC 2 cut(s) 472, 498
NheI GCTAGC 1 cut(s) 526
NlaIII CATG 8 cut(s) 184, 584, 640, 719, 965, 1040, 1079, 1298
NlaIV GGNNCC 2 cut(s) 490, 643
NspI RCATGY 1 cut(s) 1040
NspV TTCGAA 1 cut(s) 941
PaeR7I CTCGAG 1 cut(s) 302
PcsI WCGNNNNNNNCGW 1 cut(s) 294
PctI GAATGC 2 cut(s) 687, 949
PdmI GAANNNNTTC 1 cut(s) 339
PfeI GAWTC 2 cut(s) 230, 1269
PflMI CCANNNNNTGG 1 cut(s) 652
PfoI TCCNGGA 1 cut(s) 270
PleI GAGTC 1 cut(s) 719
PpsI GAGTC 1 cut(s) 719
Psp124BI GAGCTC 1 cut(s) 303
Psp6I CCWGG 1 cut(s) 1156
PspEI GGTNACC 1 cut(s) 769
PspGI CCWGG 1 cut(s) 1156
PspN4I GGNNCC 2 cut(s) 490, 643
PspPI GGNCC 4 cut(s) 214, 446, 815, 1166
PspXI VCTCGAGB 1 cut(s) 302
PstI CTGCAG 1 cut(s) 1012
PsuI RGATCY 1 cut(s) 472
RsaI GTAC 2 cut(s) 254, 1307
RsaNI GTAC 2 cut(s) 253, 1306
RseI CAYNNNNRTG 2 cut(s) 486, 635
SacI GAGCTC 1 cut(s) 303
SaqAI TTAA 5 cut(s) 477, 1049, 1184, 1245, 1356
Sau3AI GATC 2 cut(s) 472, 498
Sau96I GGNCC 4 cut(s) 214, 446, 815, 1166
SchI GAGTC 1 cut(s) 720
ScrFI CCNGG 3 cut(s) 272, 1158, 1258
SduI GDGCHC 5 cut(s) 303, 493, 610, 646, 806
SfaNI GCATC 1 cut(s) 730
SfcI CTRYAG 2 cut(s) 1008, 1360
Sfr274I CTCGAG 1 cut(s) 302
SfuI TTCGAA 1 cut(s) 941
SinI GGWCC 2 cut(s) 815, 1166
SlaI CTCGAG 1 cut(s) 302
SmiMI CAYNNNNRTG 2 cut(s) 486, 635
SmlI CTYRAG 2 cut(s) 302, 516
SmoI CTYRAG 2 cut(s) 302, 516
Sse9I AATT 2 cut(s) 110, 1116
SspMI CTAG 2 cut(s) 527, 1310
SstI GAGCTC 1 cut(s) 303
StyD4I CCNGG 3 cut(s) 270, 1156, 1256
TaaI ACNGT 3 cut(s) 601, 1028, 1361
TaiI ACGT 2 cut(s) 270, 780
TaqI TCGA 3 cut(s) 303, 941, 988
TasI AATT 2 cut(s) 110, 1116
TauI GCSGC 8 cut(s) 67, 170, 173, 243, 261, 311, 412, 688
TfiI GAWTC 2 cut(s) 230, 1269
Tru1I TTAA 5 cut(s) 477, 1049, 1184, 1245, 1356
Tru9I TTAA 5 cut(s) 477, 1049, 1184, 1245, 1356
TscAI CASTG 3 cut(s) 598, 1033, 1305
TseI GCWGC 3 cut(s) 5, 1007, 1040
TspDTI ATGAA 3 cut(s) 348, 1119, 1376
TspGWI ACGGA 1 cut(s) 261
TspRI CASTG 3 cut(s) 598, 1033, 1305
Van91I CCANNNNNTGG 1 cut(s) 652
VpaK11BI GGWCC 2 cut(s) 815, 1166
XapI RAATTY 1 cut(s) 110
XceI RCATGY 1 cut(s) 1040
XcmI CCANNNNNNNNNTGG 1 cut(s) 857
XhoI CTCGAG 1 cut(s) 302
XmnI GAANNNNTTC 1 cut(s) 339
XspI CTAG 2 cut(s) 527, 1310
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.