Rh6CG230100

tryptophan synthase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
Physical Location & Seq
Reverse (-)
38648892 .. 38650420
1529 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG230100.1

Sequence Viewer

Length: 1362 bp
ATGACAAGCTCTACCACCACTCCCAAAACCATAATCACCCCGCCACTCCCAAAGCCCTACTCCTCCTTCCAGTTGCCCTCAAAATTCTGCAACCATGTCACCACCCCTTCTTCCACCTCCTGCACCCTCATCCGAGACTCGACGAGTGTTTGCATGGCGGGCTTGCCCCGACCCGATTCATTTGGACGGTATGGGAAGTATGGCGGGAAGTACGTCCCAGAAACGCTAATGCACGCGCTGACAGAACTAGAGACTGCGTTTCACGCTCTAGCTCATGACGGAGAATTTGAGAAAGAGTTGAATGGGATTTTGAGAGACTATGTTGGTAGGGAGACTCCTCTCTATTTTGCAGAGAGGCTGACTGAACACTACAGACGTCCAAATGGTGAAGGCCCTCACATTTACCTAAAGAGGGAAGATCTTAACCATACCGGGGCACACAAGATCAACAATGTTGTTGGCCAAGCTTTGCTCGCTAAGCGGTTGGGCAAGAAACGCATTATTGCTGAAACTGGGGCAGGTCAACATGGAGTTGCCACTGCAACTGTTTGTGCTCGGTTTGGGTTGCAATGCATTATTTACATGGGTGCCCAAGATATGGAAAGGCAAGCCCTCAACGTTTTCCGAATGCGGCTTCTTGGCGCTAAAGTTAAGGCTGTTCATTCTGGAACAGCAACACTAAAGGATGCTACTTCAGAAGCTATAAGGGACTGGGTAACTAATGTCGAGACAACTCATTATATTTTGGGCTCTGTTGCTGGCCCTCATCCATACCCTATGATGGTTCGCGATTTCCACAAGGTGATCGGTAAAGAAACAAGAAAACAGGCACTCGAAAAATGGGGTGGAAAGCCAGATGTGCTAGTTGCTTGTGTAGGTGGAGGATCAAACGCTATGGGACTCTTCCATGAGTTCGTTGAAGACAAAGATATTCGATTGATAGGAGTAGAAGCTGCAGGGTTTGGATTGGATAGTGGCAAGCATGCTGCAACTTTGACAAAAGGTGATGTTGGGGTTCTGCACGGAGCTATGAGCTACTTGTTACAGGATGAAGATGGCCAAATTATTGAGCCTCATTCTATAAGTGCAGGCTTAGATTATCCTGGGGTTGGACCGGAGCACAGTTTTCTGAAAGACTTGGGGCGTGCTGAGTACTACAGCGTTACTGACGATGAAGCATTGGAAGCTTTTAAAAAATTGTCACAACTTGAGGGAATAATTCCAGCTTTGGAGACCTCTCATGCACTAGCCTACTTAGAAAAGTTGTGTCCTACTCTTCCTAATGGGGCAAAGGTCGTCCTTAACTGCAGTGGCAGAGGGGATAAGGATGTTCATACTGCCATCAAGCACTTGCAGGTGTGA

Protein Analysis

453

Amino Acids

49.36

Weight (kDa)

7.07

Isoelectric Point (pI)

29.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PALP PF00291 109 - 438 4e-44 Pyridoxal-phosphate dependent enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1345
AatII GACGTC 1 cut(s) 379
Acc36I ACCTGC 2 cut(s) 509, 1345
AccB1I GGYRCC 1 cut(s) 587
AccB7I CCANNNNNTGG 1 cut(s) 598
AccII CGCG 2 cut(s) 236, 789
AciI CCGC 5 cut(s) 41, 158, 204, 481, 631
AclI AACGTT 1 cut(s) 618
AclWI GGATC 1 cut(s) 892
AcoI YGGCCR 2 cut(s) 460, 1057
AcsI RAATTY 2 cut(s) 83, 284
AcuI CTGAAG 1 cut(s) 678
AcyI GRCGYC 1 cut(s) 376
AdeI CACNNNGTG 1 cut(s) 802
AfaI GTAC 2 cut(s) 212, 1154
AfiI CCNNNNNNNGG 5 cut(s) 412, 433, 598, 781, 1109
AgsI TTSAA 2 cut(s) 301, 920
AjnI CCWGG 1 cut(s) 1102
AluBI AGCT 9 cut(s) 9, 272, 467, 701, 953, 1028, 1035, 1187, 1226
AluI AGCT 9 cut(s) 9, 272, 467, 701, 953, 1028, 1035, 1187, 1226
Alw21I GWGCWC 2 cut(s) 556, 1122
Alw26I GTCTC 6 cut(s) 129, 245, 309, 326, 722, 1226
AlwI GGATC 1 cut(s) 892
AoxI GGCC 4 cut(s) 391, 460, 760, 1057
ApeKI GCWGC 2 cut(s) 953, 986
ApoI RAATTY 2 cut(s) 83, 284
ArsI GACNNNNNNTTYG 2 cut(s) 269, 301
AspLEI GCGC 2 cut(s) 238, 644
AspS9I GGNCC 3 cut(s) 392, 761, 1112
AsuC2I CCSGG 1 cut(s) 433
AsuHPI GGTGA 5 cut(s) 28, 91, 398, 814, 1016
AvaII GGWCC 1 cut(s) 1112
BaeGI GKGCMC 2 cut(s) 439, 592
BalI TGGCCA 2 cut(s) 462, 1059
BanI GGYRCC 1 cut(s) 587
BanII GRGCYC 1 cut(s) 752
BbsI GAAGAC 1 cut(s) 927
Bbv12I GWGCWC 2 cut(s) 556, 1122
BbvI GCAGC 2 cut(s) 940, 973
BccI CCATC 3 cut(s) 775, 1049, 1349
BciT130I CCWGG 1 cut(s) 1104
BcnI CCSGG 1 cut(s) 433
BcoDI GTCTC 6 cut(s) 129, 245, 309, 326, 722, 1226
BfaI CTAG 4 cut(s) 248, 269, 863, 1247
BfmI CTRYAG 4 cut(s) 370, 954, 1156, 1306
BfoI RGCGCY 1 cut(s) 645
BfuAI ACCTGC 2 cut(s) 509, 1345
BglII AGATCT 1 cut(s) 418
BisI GCNGC 3 cut(s) 632, 954, 987
BlpI GCTNAGC 1 cut(s) 477
BlsI GCNGC 3 cut(s) 633, 955, 988
BmcAI AGTACT 1 cut(s) 1154
Bme1390I CCNGG 2 cut(s) 433, 1104
Bme18I GGWCC 1 cut(s) 1112
BmgT120I GGNCC 3 cut(s) 392, 761, 1112
BmiI GGNNCC 1 cut(s) 589
BmrFI CCNGG 2 cut(s) 433, 1104
BmrI ACTGGG 2 cut(s) 522, 721
BmsI GCATC 1 cut(s) 676
BmuI ACTGGG 2 cut(s) 522, 721
BpiI GAAGAC 1 cut(s) 927
Bpu1102I GCTNAGC 1 cut(s) 477
BpuEI CTTGAG 1 cut(s) 1229
BpuMI CCSGG 1 cut(s) 433
BsaHI GRCGYC 1 cut(s) 376
BsaI GGTCTC 1 cut(s) 1226
BsaJI CCNNGG 2 cut(s) 432, 1103
BsaWI WCCGGW 1 cut(s) 1114
BsaXI ACNNNNNCTCC 1 cut(s) 34
Bsc4I CCNNNNNNNGG 5 cut(s) 412, 433, 598, 781, 1109
Bse1I ACTGG 3 cut(s) 70, 517, 716
Bse3DI GCAATG 1 cut(s) 575
BseBI CCWGG 1 cut(s) 1104
BseDI CCNNGG 2 cut(s) 432, 1103
BseGI GGATG 5 cut(s) 129, 691, 766, 1054, 1333
BseLI CCNNNNNNNGG 5 cut(s) 412, 433, 598, 781, 1109
BseMI GCAATG 1 cut(s) 575
BseMII CTCAG 1 cut(s) 1140
BseNI ACTGG 3 cut(s) 70, 517, 716
BseRI GAGGAG 2 cut(s) 52, 327
BseSI GKGCMC 2 cut(s) 439, 592
BseXI GCAGC 2 cut(s) 940, 973
BsgI GTGCAG 3 cut(s) 106, 1004, 1107
Bsh1236I CGCG 2 cut(s) 236, 789
BshFI GGCC 4 cut(s) 393, 462, 762, 1059
BshNI GGYRCC 1 cut(s) 587
BsiHKAI GWGCWC 2 cut(s) 556, 1122
BsiSI CCGG 2 cut(s) 432, 1115
BslFI GGGAC 3 cut(s) 200, 722, 912
BslI CCNNNNNNNGG 5 cut(s) 412, 433, 598, 781, 1109
BsmAI GTCTC 6 cut(s) 129, 245, 309, 326, 722, 1226
BsmFI GGGAC 3 cut(s) 200, 722, 912
BsmI GAATGC 1 cut(s) 633
BsnI GGCC 4 cut(s) 393, 462, 762, 1059
Bso31I GGTCTC 1 cut(s) 1226
Bsp1286I GDGCHC 5 cut(s) 439, 556, 592, 752, 1122
Bsp143I GATC 4 cut(s) 418, 444, 804, 884
Bsp1720I GCTNAGC 1 cut(s) 477
Bsp68I TCGCGA 1 cut(s) 789
BspACI CCGC 5 cut(s) 41, 158, 204, 481, 631
BspANI GGCC 4 cut(s) 393, 462, 762, 1059
BspCNI CTCAG 1 cut(s) 1141
BspFNI CGCG 2 cut(s) 236, 789
BspHI TCATGA 1 cut(s) 274
BspLI GGNNCC 1 cut(s) 589
BspMAI CTGCAG 2 cut(s) 958, 1310
BspMI ACCTGC 2 cut(s) 509, 1345
BspPI GGATC 1 cut(s) 892
BspT107I GGYRCC 1 cut(s) 587
BspTNI GGTCTC 1 cut(s) 1226
BsrDI GCAATG 1 cut(s) 575
BsrI ACTGG 3 cut(s) 70, 517, 716
BssECI CCNNGG 2 cut(s) 432, 1103
BssMI GATC 4 cut(s) 418, 444, 804, 884
BssNI GRCGYC 1 cut(s) 376
Bst2UI CCWGG 1 cut(s) 1104
Bst4CI ACNGT 3 cut(s) 189, 547, 1124
Bst6I CTCTTC 2 cut(s) 908, 1281
BstACI GRCGYC 1 cut(s) 376
BstDEI CTNAG 4 cut(s) 477, 1093, 1149, 1255
BstF5I GGATG 5 cut(s) 129, 691, 766, 1054, 1333
BstFNI CGCG 2 cut(s) 236, 789
BstH2I RGCGCY 1 cut(s) 645
BstHHI GCGC 2 cut(s) 238, 644
BstKTI GATC 4 cut(s) 421, 447, 807, 887
BstMAI GTCTC 6 cut(s) 129, 245, 309, 326, 722, 1226
BstMBI GATC 4 cut(s) 418, 444, 804, 884
BstMWI GCNNNNNNNGC 7 cut(s) 159, 263, 473, 478, 495, 859, 1184
BstNI CCWGG 1 cut(s) 1104
BstNSI RCATGY 1 cut(s) 986
BstSCI CCNGG 2 cut(s) 431, 1102
BstSFI CTRYAG 4 cut(s) 370, 954, 1156, 1306
BstSLI GKGCMC 2 cut(s) 439, 592
BstUI CGCG 2 cut(s) 236, 789
BstV1I GCAGC 2 cut(s) 940, 973
BstV2I GAAGAC 1 cut(s) 927
BstX2I RGATCY 1 cut(s) 418
BstYI RGATCY 1 cut(s) 418
BsuRI GGCC 4 cut(s) 393, 462, 762, 1059
BtsCI GGATG 5 cut(s) 129, 691, 766, 1054, 1333
BtsI GCAGTG 2 cut(s) 537, 1315
BtsIMutI CAGTG 2 cut(s) 537, 1315
BtuMI TCGCGA 1 cut(s) 789
BveI ACCTGC 2 cut(s) 509, 1345
CciI TCATGA 1 cut(s) 274
CfoI GCGC 2 cut(s) 238, 644
Cfr13I GGNCC 3 cut(s) 392, 761, 1112
Csp6I GTAC 2 cut(s) 211, 1153
CviAII CATG 8 cut(s) 95, 154, 275, 527, 583, 908, 983, 1241
CviQI GTAC 2 cut(s) 211, 1153
DdeI CTNAG 4 cut(s) 477, 1093, 1149, 1255
DpnI GATC 4 cut(s) 420, 446, 806, 886
DpnII GATC 4 cut(s) 418, 444, 804, 884
DraI TTTAAA 1 cut(s) 1192
DraIII CACNNNGTG 1 cut(s) 802
EaeI YGGCCR 2 cut(s) 460, 1057
Eam1104I CTCTTC 2 cut(s) 908, 1281
EarI CTCTTC 2 cut(s) 908, 1281
Eco24I GRGCYC 1 cut(s) 752
Eco31I GGTCTC 1 cut(s) 1226
Eco47I GGWCC 1 cut(s) 1112
Eco57I CTGAAG 1 cut(s) 678
EcoO109I RGGNCCY 1 cut(s) 392
EcoRII CCWGG 1 cut(s) 1102
EcoT22I ATGCAT 1 cut(s) 575
EcoT38I GRGCYC 1 cut(s) 752
FaeI CATG 8 cut(s) 98, 157, 278, 530, 586, 911, 986, 1244
FaqI GGGAC 3 cut(s) 200, 722, 912
FatI CATG 8 cut(s) 94, 153, 274, 526, 582, 907, 982, 1240
FauI CCCGC 3 cut(s) 48, 151, 197
Fnu4HI GCNGC 3 cut(s) 632, 954, 987
FokI GGATG 5 cut(s) 116, 698, 753, 1061, 1340
FriOI GRGCYC 1 cut(s) 752
Fsp4HI GCNGC 3 cut(s) 632, 954, 987
FspBI CTAG 4 cut(s) 248, 269, 863, 1247
GlaI GCGC 2 cut(s) 237, 643
GluI GCNGC 3 cut(s) 632, 954, 987
HaeII RGCGCY 1 cut(s) 645
HaeIII GGCC 4 cut(s) 393, 462, 762, 1059
HapII CCGG 2 cut(s) 432, 1115
HhaI GCGC 2 cut(s) 238, 644
Hin1I GRCGYC 1 cut(s) 376
Hin1II CATG 8 cut(s) 98, 157, 278, 530, 586, 911, 986, 1244
Hin6I GCGC 2 cut(s) 236, 642
HinP1I GCGC 2 cut(s) 236, 642
HincII GTYRAC 1 cut(s) 524
HindII GTYRAC 1 cut(s) 524
HindIII AAGCTT 2 cut(s) 465, 1185
HinfI GANTC 4 cut(s) 137, 176, 334, 900
HpaII CCGG 2 cut(s) 432, 1115
HphI GGTGA 5 cut(s) 28, 91, 398, 814, 1016
Hpy166II GTNNAC 1 cut(s) 524
Hpy188I TCNGA 4 cut(s) 134, 626, 697, 1131
Hpy188III TCNNGA 4 cut(s) 275, 666, 727, 788
Hpy8I GTNNAC 1 cut(s) 524
Hpy99I CGWCG 1 cut(s) 145
HpyAV CCTTC 3 cut(s) 76, 117, 383
HpyCH4III ACNGT 3 cut(s) 189, 547, 1124
HpyCH4IV ACGT 3 cut(s) 213, 376, 618
HpyF10VI GCNNNNNNNGC 7 cut(s) 159, 263, 473, 478, 495, 859, 1184
HpyF3I CTNAG 4 cut(s) 477, 1093, 1149, 1255
HpySE526I ACGT 3 cut(s) 213, 376, 618
Hsp92I GRCGYC 1 cut(s) 376
Hsp92II CATG 8 cut(s) 98, 157, 278, 530, 586, 911, 986, 1244
HspAI GCGC 2 cut(s) 236, 642
Kzo9I GATC 4 cut(s) 418, 444, 804, 884
LmnI GCTCC 2 cut(s) 1025, 1117
Lsp1109I GCAGC 2 cut(s) 940, 973
LweI GCATC 1 cut(s) 676
MaeI CTAG 4 cut(s) 248, 269, 863, 1247
MaeII ACGT 3 cut(s) 213, 376, 618
MaeIII GTNAC 5 cut(s) 97, 715, 1041, 1162, 1200
MalI GATC 4 cut(s) 420, 446, 806, 886
MboI GATC 4 cut(s) 418, 444, 804, 884
MboII GAAGA 6 cut(s) 102, 428, 895, 932, 1064, 1268
MflI RGATCY 1 cut(s) 418
MhlI GDGCHC 5 cut(s) 439, 556, 592, 752, 1122
MlsI TGGCCA 2 cut(s) 462, 1059
MluCI AATT 5 cut(s) 83, 284, 1062, 1196, 1218
MluNI TGGCCA 2 cut(s) 462, 1059
MlyI GAGTC 3 cut(s) 131, 328, 894
MmeI TCCRAC 1 cut(s) 1090
Mox20I TGGCCA 2 cut(s) 462, 1059
Mph1103I ATGCAT 1 cut(s) 575
MscI TGGCCA 2 cut(s) 462, 1059
MseI TTAA 4 cut(s) 423, 651, 1191, 1302
Msp20I TGGCCA 2 cut(s) 462, 1059
MspI CCGG 2 cut(s) 432, 1115
MspR9I CCNGG 2 cut(s) 433, 1104
Mva1269I GAATGC 1 cut(s) 633
MvaI CCWGG 1 cut(s) 1104
MvnI CGCG 2 cut(s) 236, 789
MwoI GCNNNNNNNGC 7 cut(s) 159, 263, 473, 478, 495, 859, 1184
NciI CCSGG 1 cut(s) 433
NdeII GATC 4 cut(s) 418, 444, 804, 884
NlaIII CATG 8 cut(s) 98, 157, 278, 530, 586, 911, 986, 1244
NlaIV GGNNCC 1 cut(s) 589
NmuCI GTSAC 2 cut(s) 97, 1200
NruI TCGCGA 1 cut(s) 789
NsiI ATGCAT 1 cut(s) 575
NspI RCATGY 1 cut(s) 986
PaeI GCATGC 1 cut(s) 986
PagI TCATGA 1 cut(s) 274
PaqCI CACCTGC 1 cut(s) 1345
PctI GAATGC 1 cut(s) 633
PfeI GAWTC 1 cut(s) 176
PflMI CCANNNNNTGG 1 cut(s) 598
PkrI GCNGC 3 cut(s) 633, 955, 988
PleI GAGTC 3 cut(s) 131, 328, 894
PpsI GAGTC 3 cut(s) 131, 328, 894
Psp1406I AACGTT 1 cut(s) 618
Psp6I CCWGG 1 cut(s) 1102
PspGI CCWGG 1 cut(s) 1102
PspN4I GGNNCC 1 cut(s) 589
PspPI GGNCC 3 cut(s) 392, 761, 1112
PstI CTGCAG 2 cut(s) 958, 1310
PsuI RGATCY 1 cut(s) 418
RruI TCGCGA 1 cut(s) 789
RsaI GTAC 2 cut(s) 212, 1154
RsaNI GTAC 2 cut(s) 211, 1153
SaqAI TTAA 4 cut(s) 423, 651, 1191, 1302
SatI GCNGC 3 cut(s) 632, 954, 987
Sau3AI GATC 4 cut(s) 418, 444, 804, 884
Sau96I GGNCC 3 cut(s) 392, 761, 1112
ScaI AGTACT 1 cut(s) 1154
SchI GAGTC 3 cut(s) 131, 328, 894
ScrFI CCNGG 2 cut(s) 433, 1104
SduI GDGCHC 5 cut(s) 439, 556, 592, 752, 1122
SfaNI GCATC 1 cut(s) 676
SfcI CTRYAG 4 cut(s) 370, 954, 1156, 1306
SinI GGWCC 1 cut(s) 1112
SmlI CTYRAG 1 cut(s) 1208
SmoI CTYRAG 1 cut(s) 1208
SphI GCATGC 1 cut(s) 986
Sse9I AATT 5 cut(s) 83, 284, 1062, 1196, 1218
SsiI CCGC 5 cut(s) 41, 158, 204, 481, 631
SspMI CTAG 4 cut(s) 248, 269, 863, 1247
StyD4I CCNGG 2 cut(s) 431, 1102
TaaI ACNGT 3 cut(s) 189, 547, 1124
TaiI ACGT 3 cut(s) 216, 379, 621
TaqI TCGA 4 cut(s) 140, 726, 834, 934
TasI AATT 5 cut(s) 83, 284, 1062, 1196, 1218
TatI WGTACW 1 cut(s) 1152
TauI GCSGC 1 cut(s) 634
TfiI GAWTC 1 cut(s) 176
Tru1I TTAA 4 cut(s) 423, 651, 1191, 1302
Tru9I TTAA 4 cut(s) 423, 651, 1191, 1302
TscAI CASTG 2 cut(s) 544, 1315
TseFI GTSAC 2 cut(s) 97, 1200
TseI GCWGC 2 cut(s) 953, 986
Tsp45I GTSAC 2 cut(s) 97, 1200
TspDTI ATGAA 5 cut(s) 168, 650, 1065, 1188, 1322
TspGWI ACGGA 2 cut(s) 294, 1038
TspRI CASTG 2 cut(s) 544, 1315
Van91I CCANNNNNTGG 1 cut(s) 598
VpaK11BI GGWCC 1 cut(s) 1112
XapI RAATTY 2 cut(s) 83, 284
XceI RCATGY 1 cut(s) 986
XspI CTAG 4 cut(s) 248, 269, 863, 1247
ZraI GACGTC 1 cut(s) 377
ZrmI AGTACT 1 cut(s) 1154
Zsp2I ATGCAT 1 cut(s) 575
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.