Rmu_sc0005416.1_g000042

tryptophan synthase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005416.1
Physical Location & Seq
Reverse (-)
192968 .. 196111
3144 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005416.1_g000042.1.cds

Sequence Viewer

Length: 1416 bp
atggcagcctccgctagctcaaccacagcttgcaaaacccacccgaacctaatcaccgcgccgctctcaaaaccttactcctcccgactgcccttcaagttccggaaatttacctcccgtgccaccgccccttcctccatctcctgcactctcgcccgagactccgccgccggtctccggatggatagccagagcgcaaacgggtcgctggcgggcctgccccgacccgattcctttggccggtacgggaagtatggcggaaaatacgtcccggaaacgctaatgcacgcgctcaccgagcttgagacggcgtttcacgcgctcgctcatgacgaggattttcagacagagttgaatggcattttgaaggactatgttggcagggagactcctctctattttgcagagcggctgactgaacattacaaacgtcctaatggtgaggggccacacatttacttgaaaagagaggatcttaaccatactggggctcacaagatcaacaatgctgttgcccaggctctattagctaagaaattgggcaagaaacgcataattgccgagactggagctggtcaacatggagttgccactgcaacggtctgtgctcggtttggattgcagtgtatcatctacatgggtgcccaagatatggagagacaagctctcaatgttttcagaatgcggcttcttggtgctgaggttaggggagtccatgctggaacagccacattgaaggatgctacttcagaagctataagggactgggttaccaacgtagagacaactcattatattttggggtcggttgctggccctcatccataccctatgatggttcgtgatttccacaaggtaattggtagagaaacaagaaaacaggcattggaaaagtggggtgggaaaccagatgtgttggtagcttgtgtaggtggtggctccaatgctatgggactcttccatgagtttgtggaagacaaagacgttcgattgattggggtggaagctgcaggctttggattggacagcggcaaacatgctgcaaccttaaccaaaggggatgttggggttttgcatggagctatgagctacttgttacaggatgaagacggccaaattattgagcctcattctataagtgcaggcttggattaccctggagttggaccggagcatagttttctgaaagacttggggcgtgctgaatactatagcattacagatgatgaagcattagaggcctttaaaagattgtcacgactggagggaataattccggctctggagacttctcatgcactggcttacttggaaaagctctgccctactcttcctgatgggaccaaacttgtgcttaactgtagtggcagaggggataaggatgttcatactgccatcaaacacttggaggtttga

Protein Analysis

471

Amino Acids

51.12

Weight (kDa)

7.07

Isoelectric Point (pI)

31.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 641
AccB7I CCANNNNNTGG 1 cut(s) 652
AccBSI CCGCTC 2 cut(s) 64, 409
AccII CGCG 3 cut(s) 59, 290, 320
AccIII TCCGGA 2 cut(s) 102, 177
AclWI GGATC 1 cut(s) 480
AcoI YGGCCR 2 cut(s) 238, 1111
AcsI RAATTY 1 cut(s) 107
AcuI CTGAAG 1 cut(s) 732
AfaI GTAC 1 cut(s) 245
AfiI CCNNNNNNNGG 6 cut(s) 177, 240, 487, 652, 835, 1163
AgsI TTSAA 5 cut(s) 97, 355, 367, 463, 736
AjnI CCWGG 2 cut(s) 516, 1156
Alw21I GWGCWC 1 cut(s) 610
Alw26I GTCTC 8 cut(s) 153, 179, 299, 380, 557, 652, 776, 1280
AlwI GGATC 1 cut(s) 480
Ama87I CYCGRG 1 cut(s) 156
Aor13HI TCCGGA 2 cut(s) 102, 177
AoxI GGCC 6 cut(s) 214, 238, 446, 814, 1111, 1239
ApeKI GCWGC 3 cut(s) 5, 1007, 1040
ApoI RAATTY 1 cut(s) 107
AspLEI GCGC 4 cut(s) 61, 197, 292, 322
AspS9I GGNCC 5 cut(s) 214, 446, 815, 1166, 1341
AsuC2I CCSGG 1 cut(s) 272
AsuHPI GGTGA 3 cut(s) 46, 286, 452
AsuNHI GCTAGC 1 cut(s) 14
AvaI CYCGRG 1 cut(s) 156
AvaII GGWCC 2 cut(s) 1166, 1341
BaeGI GKGCMC 1 cut(s) 646
BanI GGYRCC 1 cut(s) 641
BanII GRGCYC 1 cut(s) 493
BbsI GAAGAC 2 cut(s) 981, 1113
Bbv12I GWGCWC 1 cut(s) 610
BbvCI CCTCAGC 1 cut(s) 699
BbvI GCAGC 3 cut(s) 17, 994, 1027
BccI CCATC 5 cut(s) 146, 175, 829, 1331, 1403
BceAI ACGGC 2 cut(s) 324, 1126
BcgI CGANNNNNNTGC 2 cut(s) 186, 220
BciT130I CCWGG 2 cut(s) 518, 1158
BcnI CCSGG 1 cut(s) 272
BcoDI GTCTC 8 cut(s) 153, 179, 299, 380, 557, 652, 776, 1280
BfaI CTAG 1 cut(s) 15
BfmI CTRYAG 3 cut(s) 1008, 1210, 1360
BisI GCNGC 8 cut(s) 6, 62, 168, 410, 686, 1008, 1030, 1041
BlsI GCNGC 8 cut(s) 7, 63, 169, 411, 687, 1009, 1031, 1042
Bme1390I CCNGG 3 cut(s) 272, 518, 1158
Bme18I GGWCC 2 cut(s) 1166, 1341
BmeT110I CYCGRG 1 cut(s) 156
BmgT120I GGNCC 5 cut(s) 214, 446, 815, 1166, 1341
BmiI GGNNCC 4 cut(s) 447, 643, 940, 1342
BmrFI CCNGG 3 cut(s) 272, 518, 1158
BmrI ACTGGG 2 cut(s) 495, 775
BmsI GCATC 1 cut(s) 730
BmtI GCTAGC 1 cut(s) 18
BmuI ACTGGG 2 cut(s) 495, 775
BpiI GAAGAC 2 cut(s) 981, 1113
BplI GAGNNNNNCTC 2 cut(s) 649, 681
BpmI CTGGAG 4 cut(s) 588, 1179, 1283, 1304
Bpu10I CCTNAGC 1 cut(s) 699
BpuEI CTTGAG 1 cut(s) 323
BpuMI CCSGG 1 cut(s) 272
BsaI GGTCTC 1 cut(s) 179
BsaJI CCNNGG 2 cut(s) 516, 1156
BsaWI WCCGGW 3 cut(s) 102, 177, 1168
Bsc4I CCNNNNNNNGG 6 cut(s) 177, 240, 487, 652, 835, 1163
Bse118I RCCGGY 2 cut(s) 170, 240
Bse1I ACTGG 5 cut(s) 490, 571, 770, 1266, 1305
BseAI TCCGGA 2 cut(s) 102, 177
BseBI CCWGG 2 cut(s) 518, 1158
BseDI CCNNGG 2 cut(s) 516, 1156
BseGI GGATG 6 cut(s) 186, 745, 820, 1066, 1108, 1387
BseLI CCNNNNNNNGG 6 cut(s) 177, 240, 487, 652, 835, 1163
BseMII CTCAG 1 cut(s) 690
BseNI ACTGG 5 cut(s) 490, 571, 770, 1266, 1305
BseRI GAGGAG 2 cut(s) 70, 381
BseSI GKGCMC 1 cut(s) 646
BseXI GCAGC 3 cut(s) 17, 994, 1027
BsgI GTGCAG 2 cut(s) 130, 1161
Bsh1236I CGCG 3 cut(s) 59, 290, 320
BshFI GGCC 6 cut(s) 216, 240, 448, 816, 1113, 1241
BshNI GGYRCC 1 cut(s) 641
BsiHKAI GWGCWC 1 cut(s) 610
BsiHKCI CYCGRG 1 cut(s) 156
BsiSI CCGG 7 cut(s) 103, 171, 178, 241, 272, 1169, 1277
BslFI GGGAC 4 cut(s) 254, 776, 966, 1354
BslI CCNNNNNNNGG 6 cut(s) 177, 240, 487, 652, 835, 1163
BsmAI GTCTC 8 cut(s) 153, 179, 299, 380, 557, 652, 776, 1280
BsmBI CGTCTC 1 cut(s) 299
BsmFI GGGAC 4 cut(s) 254, 776, 966, 1354
BsmI GAATGC 1 cut(s) 687
BsnI GGCC 6 cut(s) 216, 240, 448, 816, 1113, 1241
Bso31I GGTCTC 1 cut(s) 179
BsoBI CYCGRG 1 cut(s) 156
Bsp1286I GDGCHC 3 cut(s) 493, 610, 646
Bsp13I TCCGGA 2 cut(s) 102, 177
Bsp143I GATC 2 cut(s) 472, 498
BspANI GGCC 6 cut(s) 216, 240, 448, 816, 1113, 1241
BspCNI CTCAG 1 cut(s) 691
BspEI TCCGGA 2 cut(s) 102, 177
BspFNI CGCG 3 cut(s) 59, 290, 320
BspHI TCATGA 1 cut(s) 328
BspLI GGNNCC 4 cut(s) 447, 643, 940, 1342
BspMAI CTGCAG 1 cut(s) 1012
BspOI GCTAGC 1 cut(s) 18
BspPI GGATC 1 cut(s) 480
BspT107I GGYRCC 1 cut(s) 641
BspTNI GGTCTC 1 cut(s) 179
BsrBI CCGCTC 2 cut(s) 64, 409
BsrFI RCCGGY 2 cut(s) 170, 240
BsrI ACTGG 5 cut(s) 490, 571, 770, 1266, 1305
BssAI RCCGGY 2 cut(s) 170, 240
BssECI CCNNGG 2 cut(s) 516, 1156
BssMI GATC 2 cut(s) 472, 498
Bst2UI CCWGG 2 cut(s) 518, 1158
Bst4CI ACNGT 2 cut(s) 601, 1361
Bst6I CTCTTC 2 cut(s) 962, 1335
BstDEI CTNAG 2 cut(s) 531, 699
BstEII GGTNACC 1 cut(s) 769
BstF5I GGATG 6 cut(s) 186, 745, 820, 1066, 1108, 1387
BstFNI CGCG 3 cut(s) 59, 290, 320
BstHHI GCGC 4 cut(s) 61, 197, 292, 322
BstKTI GATC 2 cut(s) 475, 501
BstMAI GTCTC 8 cut(s) 153, 179, 299, 380, 557, 652, 776, 1280
BstMBI GATC 2 cut(s) 472, 498
BstMWI GCNNNNNNNGC 7 cut(s) 11, 298, 317, 527, 549, 725, 1238
BstNI CCWGG 2 cut(s) 518, 1158
BstNSI RCATGY 1 cut(s) 1040
BstPI GGTNACC 1 cut(s) 769
BstSCI CCNGG 3 cut(s) 270, 516, 1156
BstSFI CTRYAG 3 cut(s) 1008, 1210, 1360
BstSLI GKGCMC 1 cut(s) 646
BstUI CGCG 3 cut(s) 59, 290, 320
BstV1I GCAGC 3 cut(s) 17, 994, 1027
BstV2I GAAGAC 2 cut(s) 981, 1113
BstX2I RGATCY 1 cut(s) 472
BstXI CCANNNNNNTGG 1 cut(s) 949
BstYI RGATCY 1 cut(s) 472
BsuRI GGCC 6 cut(s) 216, 240, 448, 816, 1113, 1241
BtsCI GGATG 6 cut(s) 186, 745, 820, 1066, 1108, 1387
BtsI GCAGTG 2 cut(s) 591, 629
BtsIMutI CAGTG 3 cut(s) 591, 629, 1298
CciI TCATGA 1 cut(s) 328
CfoI GCGC 4 cut(s) 61, 197, 292, 322
Cfr10I RCCGGY 2 cut(s) 170, 240
Cfr13I GGNCC 5 cut(s) 214, 446, 815, 1166, 1341
Csp6I GTAC 1 cut(s) 244
CviAII CATG 8 cut(s) 329, 581, 637, 716, 962, 1037, 1076, 1295
CviQI GTAC 1 cut(s) 244
DdeI CTNAG 2 cut(s) 531, 699
DpnI GATC 2 cut(s) 474, 500
DpnII GATC 2 cut(s) 472, 498
DraI TTTAAA 1 cut(s) 1246
EaeI YGGCCR 2 cut(s) 238, 1111
Eam1104I CTCTTC 2 cut(s) 962, 1335
EarI CTCTTC 2 cut(s) 962, 1335
EciI GGCGGA 2 cut(s) 154, 273
Eco147I AGGCCT 1 cut(s) 1241
Eco24I GRGCYC 1 cut(s) 493
Eco31I GGTCTC 1 cut(s) 179
Eco47I GGWCC 2 cut(s) 1166, 1341
Eco57I CTGAAG 1 cut(s) 732
Eco88I CYCGRG 1 cut(s) 156
Eco91I GGTNACC 1 cut(s) 769
EcoO65I GGTNACC 1 cut(s) 769
EcoRII CCWGG 2 cut(s) 516, 1156
EcoT38I GRGCYC 1 cut(s) 493
Esp3I CGTCTC 1 cut(s) 299
FaeI CATG 8 cut(s) 332, 584, 640, 719, 965, 1040, 1079, 1298
FaqI GGGAC 4 cut(s) 254, 776, 966, 1354
FatI CATG 8 cut(s) 328, 580, 636, 715, 961, 1036, 1075, 1294
FauI CCCGC 1 cut(s) 205
Fnu4HI GCNGC 8 cut(s) 6, 62, 168, 410, 686, 1008, 1030, 1041
FokI GGATG 6 cut(s) 193, 752, 807, 1073, 1115, 1394
FriOI GRGCYC 1 cut(s) 493
Fsp4HI GCNGC 8 cut(s) 6, 62, 168, 410, 686, 1008, 1030, 1041
FspBI CTAG 1 cut(s) 15
GlaI GCGC 4 cut(s) 60, 196, 291, 321
GluI GCNGC 8 cut(s) 6, 62, 168, 410, 686, 1008, 1030, 1041
GsuI CTGGAG 4 cut(s) 588, 1179, 1283, 1304
HaeIII GGCC 6 cut(s) 216, 240, 448, 816, 1113, 1241
HapII CCGG 7 cut(s) 103, 171, 178, 241, 272, 1169, 1277
HhaI GCGC 4 cut(s) 61, 197, 292, 322
Hin1II CATG 8 cut(s) 332, 584, 640, 719, 965, 1040, 1079, 1298
Hin6I GCGC 4 cut(s) 59, 195, 290, 320
HinP1I GCGC 4 cut(s) 59, 195, 290, 320
HincII GTYRAC 1 cut(s) 578
HindII GTYRAC 1 cut(s) 578
HinfI GANTC 5 cut(s) 161, 230, 388, 711, 954
HpaII CCGG 7 cut(s) 103, 171, 178, 241, 272, 1169, 1277
HphI GGTGA 3 cut(s) 46, 286, 452
Hpy166II GTNNAC 1 cut(s) 578
Hpy188I TCNGA 4 cut(s) 345, 680, 751, 1185
Hpy188III TCNNGA 8 cut(s) 84, 103, 178, 329, 842, 1257, 1283, 1334
Hpy8I GTNNAC 1 cut(s) 578
HpyAV CCTTC 4 cut(s) 103, 141, 361, 730
HpyCH4III ACNGT 2 cut(s) 601, 1361
HpyCH4IV ACGT 4 cut(s) 267, 430, 777, 984
HpyF10VI GCNNNNNNNGC 7 cut(s) 11, 298, 317, 527, 549, 725, 1238
HpyF3I CTNAG 2 cut(s) 531, 699
HpySE526I ACGT 4 cut(s) 267, 430, 777, 984
Hsp92II CATG 8 cut(s) 332, 584, 640, 719, 965, 1040, 1079, 1298
HspAI GCGC 4 cut(s) 59, 195, 290, 320
Kpn2I TCCGGA 2 cut(s) 102, 177
Kzo9I GATC 2 cut(s) 472, 498
LmnI GCTCC 4 cut(s) 569, 944, 1079, 1171
Lsp1109I GCAGC 3 cut(s) 17, 994, 1027
LweI GCATC 1 cut(s) 730
MaeI CTAG 1 cut(s) 15
MaeII ACGT 4 cut(s) 267, 430, 777, 984
MaeIII GTNAC 3 cut(s) 769, 1095, 1254
MalI GATC 2 cut(s) 474, 500
MbiI CCGCTC 2 cut(s) 64, 409
MboI GATC 2 cut(s) 472, 498
MboII GAAGA 4 cut(s) 949, 986, 1118, 1322
MflI RGATCY 1 cut(s) 472
MhlI GDGCHC 3 cut(s) 493, 610, 646
MluCI AATT 6 cut(s) 107, 536, 555, 858, 1116, 1272
MlyI GAGTC 4 cut(s) 155, 382, 720, 948
MmeI TCCRAC 1 cut(s) 1144
MroI TCCGGA 2 cut(s) 102, 177
MseI TTAA 4 cut(s) 477, 1049, 1245, 1356
MslI CAYNNNNRTG 1 cut(s) 635
MspA1I CMGCKG 1 cut(s) 1029
MspI CCGG 7 cut(s) 103, 171, 178, 241, 272, 1169, 1277
MspR9I CCNGG 3 cut(s) 272, 518, 1158
Mva1269I GAATGC 1 cut(s) 687
MvaI CCWGG 2 cut(s) 518, 1158
MvnI CGCG 3 cut(s) 59, 290, 320
MwoI GCNNNNNNNGC 7 cut(s) 11, 298, 317, 527, 549, 725, 1238
NciI CCSGG 1 cut(s) 272
NdeII GATC 2 cut(s) 472, 498
NheI GCTAGC 1 cut(s) 14
NlaIII CATG 8 cut(s) 332, 584, 640, 719, 965, 1040, 1079, 1298
NlaIV GGNNCC 4 cut(s) 447, 643, 940, 1342
NmeAIII GCCGAG 1 cut(s) 586
NmuCI GTSAC 1 cut(s) 1254
NspI RCATGY 1 cut(s) 1040
PagI TCATGA 1 cut(s) 328
PceI AGGCCT 1 cut(s) 1241
PcsI WCGNNNNNNNCGW 2 cut(s) 294, 330
PctI GAATGC 1 cut(s) 687
PfeI GAWTC 1 cut(s) 230
PflMI CCANNNNNTGG 1 cut(s) 652
PfoI TCCNGGA 1 cut(s) 270
PkrI GCNGC 8 cut(s) 7, 63, 169, 411, 687, 1009, 1031, 1042
PleI GAGTC 4 cut(s) 155, 382, 719, 948
PpsI GAGTC 4 cut(s) 155, 382, 719, 948
Psp6I CCWGG 2 cut(s) 516, 1156
PspEI GGTNACC 1 cut(s) 769
PspGI CCWGG 2 cut(s) 516, 1156
PspN4I GGNNCC 4 cut(s) 447, 643, 940, 1342
PspPI GGNCC 5 cut(s) 214, 446, 815, 1166, 1341
PstI CTGCAG 1 cut(s) 1012
PsuI RGATCY 1 cut(s) 472
RsaI GTAC 1 cut(s) 245
RsaNI GTAC 1 cut(s) 244
RseI CAYNNNNRTG 1 cut(s) 635
SaqAI TTAA 4 cut(s) 477, 1049, 1245, 1356
SatI GCNGC 8 cut(s) 6, 62, 168, 410, 686, 1008, 1030, 1041
Sau3AI GATC 2 cut(s) 472, 498
Sau96I GGNCC 5 cut(s) 214, 446, 815, 1166, 1341
SchI GAGTC 4 cut(s) 155, 382, 720, 948
ScrFI CCNGG 3 cut(s) 272, 518, 1158
SduI GDGCHC 3 cut(s) 493, 610, 646
SfaNI GCATC 1 cut(s) 730
SfcI CTRYAG 3 cut(s) 1008, 1210, 1360
SinI GGWCC 2 cut(s) 1166, 1341
SmiMI CAYNNNNRTG 1 cut(s) 635
SmlI CTYRAG 1 cut(s) 302
SmoI CTYRAG 1 cut(s) 302
Sse9I AATT 6 cut(s) 107, 536, 555, 858, 1116, 1272
SseBI AGGCCT 1 cut(s) 1241
SspMI CTAG 1 cut(s) 15
StuI AGGCCT 1 cut(s) 1241
StyD4I CCNGG 3 cut(s) 270, 516, 1156
TaaI ACNGT 2 cut(s) 601, 1361
TaiI ACGT 4 cut(s) 270, 433, 780, 987
TaqI TCGA 1 cut(s) 988
TasI AATT 6 cut(s) 107, 536, 555, 858, 1116, 1272
TauI GCSGC 5 cut(s) 64, 170, 412, 688, 1032
TfiI GAWTC 1 cut(s) 230
Tru1I TTAA 4 cut(s) 477, 1049, 1245, 1356
Tru9I TTAA 4 cut(s) 477, 1049, 1245, 1356
TscAI CASTG 3 cut(s) 598, 629, 1305
TseFI GTSAC 1 cut(s) 1254
TseI GCWGC 3 cut(s) 5, 1007, 1040
Tsp45I GTSAC 1 cut(s) 1254
TspDTI ATGAA 3 cut(s) 1119, 1242, 1376
TspRI CASTG 3 cut(s) 598, 629, 1305
Van91I CCANNNNNTGG 1 cut(s) 652
VpaK11BI GGWCC 2 cut(s) 1166, 1341
XapI RAATTY 1 cut(s) 107
XceI RCATGY 1 cut(s) 1040
XcmI CCANNNNNNNNNTGG 2 cut(s) 857, 1402
XspI CTAG 1 cut(s) 15
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.