Rroxscaffold_1G00042990

tryptophan synthase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Forward (+)
61307183 .. 61310664
3482 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00042990.1

Sequence Viewer

Length: 1413 bp
ATGGCAGCCTCCGCTAGCTCAACCACAGCTTGCAAAACCCACCCGAACCTATTCACCGCGCCGCTCTCAAAACCTTACTCCTCCCAACTGCCATTCAAGTTCGGCAAATTTACCTCCCGTGCCATCGCCCCTTCCTCCATCTCCTGCACTCTCGCCCGAGACTCCTCCGCCGCCGCCCTCAGGATGGATAGCCAGAGCGCAAACGGGTCGCCGGCGGGCCTGCCTCGACCCGATTCCTTTGGCCGGTTCGGGAAGTATGGCGGAAAATACGTCCCGGAAACGCTAATGCACGCGCTCACCGAGCTTGAGACGGCGTTTCACGCGCTCGCTCATGACGAGGATTTTCAGACAGAGTTGAATGGCATTTTGAAGGACTATGTTGGCAGGGAGACTCCTCTCTATTTTGCAGAGCGGCTGACTGAACATTACAAACGTCCTAATGGTGAGGGGCCACACATTTACTTGAAAAGAGAGGATCTTAACCATACTGGGGCTCACAAGATCAACAATGCTGTTGCCCAGGCTCTATTAGCTAAGAAATTGGGCAAGAAACGCATAATTGCTGAGACTGGAGCTGGTCAGCATGGAGTTGCCACTGCAACGGTCTGTGCTCGGTTTGGATTGCAGTGTATCATCTACATGGGTGCCCAAGATATGGAGAGACAAGCTCTCAATGTTTTCAGAATGCGGCTTCTTGGTGCTGAGGGAGTCCATGCTGGAACTGCCACATTGAAGGATGCTACTTCAGAAGCTATAAGGGACTGGGTTACCAACGTAGAGACAACTCATTATATTTTGGGTTCGGTTGCTGGCCCTCATCCATACCCTATGATGGTTCGTGATTTCCACAAGGTAATTGGTAGAGAAACAAGAAAACAGGCATTGGAAAAGTGGGGTGGGAAACCAGATGTTTTGGTAGCTTGTGTAGGTGGTGGCTCAAATGCTATGGGACTCTTCCATGAGTTTGTGGAAGACACAGACGTTCGATTGATTGGGGTGGAAGCTGCAGGCTTTGGATTGGACAGCGGCAAACATGCTGCAACCTTAACCAAAGGGGATGTTGGGGTTTTGCATGGAGCTATGAGCTACTTGTTACAGGATGAAGACGGCCAAATTATTGAGCCTCATTCTATAAGTGCAGGCTTGGATTACCCCGGAGTTGGACCGGAGCATAGTTTTCTGAAAGACTTGGGGCGTGCTGAATACTATAGCATTACAGATGATGAAGCATTGGAGGCCTTTAAAAGATTGTCACGACTGGAGGGAATAATTCCGGCTCTGGAGACTTCTCATGCACTGGCTTACTTAGAAAAGCTCTGCCCTACTCTTCCTGATGGGACCAAAGTTGTGCTTAACTGTAGTGGCAGAGGGGATAAGGATGTTCATACTGCCATCAAACACTTGAAGGTTTGA

Protein Analysis

470

Amino Acids

50.81

Weight (kDa)

6.73

Isoelectric Point (pI)

33.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PALP PF00291 128 - 455 1e-43 Pyridoxal-phosphate dependent enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 644
AccB7I CCANNNNNTGG 1 cut(s) 655
AccBSI CCGCTC 2 cut(s) 64, 412
AccII CGCG 3 cut(s) 59, 293, 323
AclWI GGATC 1 cut(s) 483
AcoI YGGCCR 2 cut(s) 241, 1108
AcsI RAATTY 1 cut(s) 107
AcuI CTGAAG 1 cut(s) 729
AfiI CCNNNNNNNGG 7 cut(s) 180, 184, 243, 490, 655, 832, 1160
AgsI TTSAA 6 cut(s) 97, 358, 370, 466, 733, 1405
AjnI CCWGG 1 cut(s) 519
Alw21I GWGCWC 1 cut(s) 613
Alw26I GTCTC 7 cut(s) 153, 302, 383, 560, 655, 773, 1277
AlwI GGATC 1 cut(s) 483
Ama87I CYCGRG 1 cut(s) 156
AoxI GGCC 6 cut(s) 217, 241, 449, 811, 1108, 1236
ApeKI GCWGC 3 cut(s) 5, 1004, 1037
ApoI RAATTY 1 cut(s) 107
Asp700I GAANNNNTTC 1 cut(s) 50
AspLEI GCGC 4 cut(s) 61, 200, 295, 325
AspS9I GGNCC 5 cut(s) 217, 449, 812, 1163, 1338
AsuC2I CCSGG 2 cut(s) 275, 1155
AsuHPI GGTGA 3 cut(s) 46, 289, 455
AsuNHI GCTAGC 1 cut(s) 14
AvaI CYCGRG 1 cut(s) 156
AvaII GGWCC 2 cut(s) 1163, 1338
AxyI CCTNAGG 1 cut(s) 179
BaeGI GKGCMC 1 cut(s) 649
BanI GGYRCC 1 cut(s) 644
BanII GRGCYC 1 cut(s) 496
BbsI GAAGAC 2 cut(s) 978, 1110
Bbv12I GWGCWC 1 cut(s) 613
BbvCI CCTCAGC 1 cut(s) 702
BbvI GCAGC 3 cut(s) 17, 991, 1024
BccI CCATC 6 cut(s) 131, 146, 178, 826, 1328, 1400
BceAI ACGGC 2 cut(s) 327, 1123
BcgI CGANNNNNNTGC 2 cut(s) 189, 223
BciT130I CCWGG 1 cut(s) 521
BcnI CCSGG 2 cut(s) 275, 1155
BcoDI GTCTC 7 cut(s) 153, 302, 383, 560, 655, 773, 1277
BfaI CTAG 1 cut(s) 15
BfmI CTRYAG 3 cut(s) 1005, 1207, 1357
BisI GCNGC 9 cut(s) 6, 62, 171, 174, 413, 689, 1005, 1027, 1038
BlsI GCNGC 9 cut(s) 7, 63, 172, 175, 414, 690, 1006, 1028, 1039
Bme1390I CCNGG 3 cut(s) 275, 521, 1155
Bme18I GGWCC 2 cut(s) 1163, 1338
BmeT110I CYCGRG 1 cut(s) 156
BmgT120I GGNCC 5 cut(s) 217, 449, 812, 1163, 1338
BmiI GGNNCC 3 cut(s) 450, 646, 1339
BmrFI CCNGG 3 cut(s) 275, 521, 1155
BmrI ACTGGG 2 cut(s) 498, 772
BmsI GCATC 1 cut(s) 727
BmtI GCTAGC 1 cut(s) 18
BmuI ACTGGG 2 cut(s) 498, 772
BpiI GAAGAC 2 cut(s) 978, 1110
BplI GAGNNNNNCTC 2 cut(s) 652, 684
BpmI CTGGAG 3 cut(s) 591, 1280, 1301
Bpu10I CCTNAGC 1 cut(s) 702
BpuEI CTTGAG 1 cut(s) 326
BpuMI CCSGG 2 cut(s) 275, 1155
BsaJI CCNNGG 2 cut(s) 519, 1153
BsaWI WCCGGW 1 cut(s) 1165
Bsc4I CCNNNNNNNGG 7 cut(s) 180, 184, 243, 490, 655, 832, 1160
Bse118I RCCGGY 2 cut(s) 211, 243
Bse1I ACTGG 5 cut(s) 493, 574, 767, 1263, 1302
Bse21I CCTNAGG 1 cut(s) 179
BseBI CCWGG 1 cut(s) 521
BseDI CCNNGG 2 cut(s) 519, 1153
BseGI GGATG 6 cut(s) 189, 742, 817, 1063, 1105, 1384
BseLI CCNNNNNNNGG 7 cut(s) 180, 184, 243, 490, 655, 832, 1160
BseMII CTCAG 3 cut(s) 193, 555, 693
BseNI ACTGG 5 cut(s) 493, 574, 767, 1263, 1302
BseRI GAGGAG 3 cut(s) 70, 154, 384
BseSI GKGCMC 1 cut(s) 649
BseXI GCAGC 3 cut(s) 17, 991, 1024
BsgI GTGCAG 2 cut(s) 130, 1158
Bsh1236I CGCG 3 cut(s) 59, 293, 323
BshFI GGCC 6 cut(s) 219, 243, 451, 813, 1110, 1238
BshNI GGYRCC 1 cut(s) 644
BsiHKAI GWGCWC 1 cut(s) 613
BsiHKCI CYCGRG 1 cut(s) 156
BsiSI CCGG 6 cut(s) 212, 244, 275, 1155, 1166, 1274
BslFI GGGAC 4 cut(s) 257, 773, 963, 1351
BslI CCNNNNNNNGG 7 cut(s) 180, 184, 243, 490, 655, 832, 1160
BsmAI GTCTC 7 cut(s) 153, 302, 383, 560, 655, 773, 1277
BsmBI CGTCTC 1 cut(s) 302
BsmFI GGGAC 4 cut(s) 257, 773, 963, 1351
BsmI GAATGC 1 cut(s) 690
BsnI GGCC 6 cut(s) 219, 243, 451, 813, 1110, 1238
BsoBI CYCGRG 1 cut(s) 156
Bsp1286I GDGCHC 3 cut(s) 496, 613, 649
Bsp143I GATC 2 cut(s) 475, 501
BspANI GGCC 6 cut(s) 219, 243, 451, 813, 1110, 1238
BspCNI CTCAG 3 cut(s) 192, 556, 694
BspFNI CGCG 3 cut(s) 59, 293, 323
BspHI TCATGA 1 cut(s) 331
BspLI GGNNCC 3 cut(s) 450, 646, 1339
BspMAI CTGCAG 1 cut(s) 1009
BspOI GCTAGC 1 cut(s) 18
BspPI GGATC 1 cut(s) 483
BspT107I GGYRCC 1 cut(s) 644
BsrBI CCGCTC 2 cut(s) 64, 412
BsrFI RCCGGY 2 cut(s) 211, 243
BsrI ACTGG 5 cut(s) 493, 574, 767, 1263, 1302
BssAI RCCGGY 2 cut(s) 211, 243
BssECI CCNNGG 2 cut(s) 519, 1153
BssMI GATC 2 cut(s) 475, 501
Bst2UI CCWGG 1 cut(s) 521
Bst4CI ACNGT 2 cut(s) 604, 1358
Bst6I CTCTTC 2 cut(s) 959, 1332
BstDEI CTNAG 5 cut(s) 179, 534, 564, 702, 1306
BstEII GGTNACC 1 cut(s) 766
BstF5I GGATG 6 cut(s) 189, 742, 817, 1063, 1105, 1384
BstFNI CGCG 3 cut(s) 59, 293, 323
BstHHI GCGC 4 cut(s) 61, 200, 295, 325
BstKTI GATC 2 cut(s) 478, 504
BstMAI GTCTC 7 cut(s) 153, 302, 383, 560, 655, 773, 1277
BstMBI GATC 2 cut(s) 475, 501
BstMWI GCNNNNNNNGC 7 cut(s) 11, 301, 320, 530, 552, 722, 1235
BstNI CCWGG 1 cut(s) 521
BstNSI RCATGY 1 cut(s) 1037
BstPI GGTNACC 1 cut(s) 766
BstSCI CCNGG 3 cut(s) 273, 519, 1153
BstSFI CTRYAG 3 cut(s) 1005, 1207, 1357
BstSLI GKGCMC 1 cut(s) 649
BstUI CGCG 3 cut(s) 59, 293, 323
BstV1I GCAGC 3 cut(s) 17, 991, 1024
BstV2I GAAGAC 2 cut(s) 978, 1110
BstX2I RGATCY 1 cut(s) 475
BstYI RGATCY 1 cut(s) 475
Bsu36I CCTNAGG 1 cut(s) 179
BsuRI GGCC 6 cut(s) 219, 243, 451, 813, 1110, 1238
BtgZI GCGATG 1 cut(s) 109
BtsCI GGATG 6 cut(s) 189, 742, 817, 1063, 1105, 1384
BtsI GCAGTG 2 cut(s) 594, 632
BtsIMutI CAGTG 3 cut(s) 594, 632, 1295
CciI TCATGA 1 cut(s) 331
CfoI GCGC 4 cut(s) 61, 200, 295, 325
Cfr10I RCCGGY 2 cut(s) 211, 243
Cfr13I GGNCC 5 cut(s) 217, 449, 812, 1163, 1338
CviAII CATG 8 cut(s) 332, 584, 640, 713, 959, 1034, 1073, 1292
DdeI CTNAG 5 cut(s) 179, 534, 564, 702, 1306
DpnI GATC 2 cut(s) 477, 503
DpnII GATC 2 cut(s) 475, 501
DraI TTTAAA 1 cut(s) 1243
EaeI YGGCCR 2 cut(s) 241, 1108
Eam1104I CTCTTC 2 cut(s) 959, 1332
EarI CTCTTC 2 cut(s) 959, 1332
EciI GGCGGA 2 cut(s) 157, 276
Eco147I AGGCCT 1 cut(s) 1238
Eco24I GRGCYC 1 cut(s) 496
Eco47I GGWCC 2 cut(s) 1163, 1338
Eco57I CTGAAG 1 cut(s) 729
Eco81I CCTNAGG 1 cut(s) 179
Eco88I CYCGRG 1 cut(s) 156
Eco91I GGTNACC 1 cut(s) 766
EcoO65I GGTNACC 1 cut(s) 766
EcoRII CCWGG 1 cut(s) 519
EcoT38I GRGCYC 1 cut(s) 496
Esp3I CGTCTC 1 cut(s) 302
FaeI CATG 8 cut(s) 335, 587, 643, 716, 962, 1037, 1076, 1295
FalI AAGNNNNNCTT 2 cut(s) 1335, 1367
FaqI GGGAC 4 cut(s) 257, 773, 963, 1351
FatI CATG 8 cut(s) 331, 583, 639, 712, 958, 1033, 1072, 1291
FauI CCCGC 1 cut(s) 208
Fnu4HI GCNGC 9 cut(s) 6, 62, 171, 174, 413, 689, 1005, 1027, 1038
FokI GGATG 6 cut(s) 196, 749, 804, 1070, 1112, 1391
FriOI GRGCYC 1 cut(s) 496
Fsp4HI GCNGC 9 cut(s) 6, 62, 171, 174, 413, 689, 1005, 1027, 1038
FspBI CTAG 1 cut(s) 15
GlaI GCGC 4 cut(s) 60, 199, 294, 324
GluI GCNGC 9 cut(s) 6, 62, 171, 174, 413, 689, 1005, 1027, 1038
GsuI CTGGAG 3 cut(s) 591, 1280, 1301
HaeIII GGCC 6 cut(s) 219, 243, 451, 813, 1110, 1238
HapII CCGG 6 cut(s) 212, 244, 275, 1155, 1166, 1274
HhaI GCGC 4 cut(s) 61, 200, 295, 325
Hin1II CATG 8 cut(s) 335, 587, 643, 716, 962, 1037, 1076, 1295
Hin6I GCGC 4 cut(s) 59, 198, 293, 323
HinP1I GCGC 4 cut(s) 59, 198, 293, 323
HinfI GANTC 5 cut(s) 161, 233, 391, 708, 951
HpaII CCGG 6 cut(s) 212, 244, 275, 1155, 1166, 1274
HphI GGTGA 3 cut(s) 46, 289, 455
Hpy188I TCNGA 4 cut(s) 348, 683, 748, 1182
Hpy188III TCNNGA 7 cut(s) 181, 250, 332, 839, 1254, 1280, 1331
HpyAV CCTTC 4 cut(s) 141, 364, 727, 1399
HpyCH4III ACNGT 2 cut(s) 604, 1358
HpyCH4IV ACGT 4 cut(s) 270, 433, 774, 981
HpyF10VI GCNNNNNNNGC 7 cut(s) 11, 301, 320, 530, 552, 722, 1235
HpyF3I CTNAG 5 cut(s) 179, 534, 564, 702, 1306
HpySE526I ACGT 4 cut(s) 270, 433, 774, 981
Hsp92II CATG 8 cut(s) 335, 587, 643, 716, 962, 1037, 1076, 1295
HspAI GCGC 4 cut(s) 59, 198, 293, 323
KroI GCCGGC 1 cut(s) 211
KroNI GCCGGC 1 cut(s) 213
Kzo9I GATC 2 cut(s) 475, 501
LmnI GCTCC 3 cut(s) 572, 1076, 1168
Lsp1109I GCAGC 3 cut(s) 17, 991, 1024
LweI GCATC 1 cut(s) 727
MaeI CTAG 1 cut(s) 15
MaeII ACGT 4 cut(s) 270, 433, 774, 981
MaeIII GTNAC 3 cut(s) 766, 1092, 1251
MalI GATC 2 cut(s) 477, 503
MbiI CCGCTC 2 cut(s) 64, 412
MboI GATC 2 cut(s) 475, 501
MboII GAAGA 4 cut(s) 946, 983, 1115, 1319
MflI RGATCY 1 cut(s) 475
MhlI GDGCHC 3 cut(s) 496, 613, 649
MluCI AATT 6 cut(s) 107, 539, 558, 855, 1113, 1269
MlyI GAGTC 4 cut(s) 155, 385, 717, 945
MmeI TCCRAC 1 cut(s) 1141
MreI CGCCGGCG 1 cut(s) 211
MroNI GCCGGC 1 cut(s) 211
MroXI GAANNNNTTC 1 cut(s) 50
MseI TTAA 4 cut(s) 480, 1046, 1242, 1353
MslI CAYNNNNRTG 1 cut(s) 638
MspA1I CMGCKG 1 cut(s) 1026
MspI CCGG 6 cut(s) 212, 244, 275, 1155, 1166, 1274
MspR9I CCNGG 3 cut(s) 275, 521, 1155
Mva1269I GAATGC 1 cut(s) 690
MvaI CCWGG 1 cut(s) 521
MvnI CGCG 3 cut(s) 59, 293, 323
MwoI GCNNNNNNNGC 7 cut(s) 11, 301, 320, 530, 552, 722, 1235
NaeI GCCGGC 1 cut(s) 213
NciI CCSGG 2 cut(s) 275, 1155
NdeII GATC 2 cut(s) 475, 501
NgoMIV GCCGGC 1 cut(s) 211
NheI GCTAGC 1 cut(s) 14
NlaIII CATG 8 cut(s) 335, 587, 643, 716, 962, 1037, 1076, 1295
NlaIV GGNNCC 3 cut(s) 450, 646, 1339
NmuCI GTSAC 1 cut(s) 1251
NspI RCATGY 1 cut(s) 1037
PagI TCATGA 1 cut(s) 331
PceI AGGCCT 1 cut(s) 1238
PcsI WCGNNNNNNNCGW 2 cut(s) 297, 333
PctI GAATGC 1 cut(s) 690
PdiI GCCGGC 1 cut(s) 213
PdmI GAANNNNTTC 1 cut(s) 50
PfeI GAWTC 1 cut(s) 233
PflMI CCANNNNNTGG 1 cut(s) 655
PfoI TCCNGGA 1 cut(s) 273
PkrI GCNGC 9 cut(s) 7, 63, 172, 175, 414, 690, 1006, 1028, 1039
PleI GAGTC 4 cut(s) 155, 385, 716, 945
PpsI GAGTC 4 cut(s) 155, 385, 716, 945
Psp6I CCWGG 1 cut(s) 519
PspEI GGTNACC 1 cut(s) 766
PspGI CCWGG 1 cut(s) 519
PspN4I GGNNCC 3 cut(s) 450, 646, 1339
PspPI GGNCC 5 cut(s) 217, 449, 812, 1163, 1338
PstI CTGCAG 1 cut(s) 1009
PsuI RGATCY 1 cut(s) 475
RseI CAYNNNNRTG 1 cut(s) 638
SaqAI TTAA 4 cut(s) 480, 1046, 1242, 1353
SatI GCNGC 9 cut(s) 6, 62, 171, 174, 413, 689, 1005, 1027, 1038
Sau3AI GATC 2 cut(s) 475, 501
Sau96I GGNCC 5 cut(s) 217, 449, 812, 1163, 1338
SchI GAGTC 4 cut(s) 155, 385, 717, 945
ScrFI CCNGG 3 cut(s) 275, 521, 1155
SduI GDGCHC 3 cut(s) 496, 613, 649
SfaNI GCATC 1 cut(s) 727
SfcI CTRYAG 3 cut(s) 1005, 1207, 1357
SgrAI CRCCGGYG 1 cut(s) 211
SinI GGWCC 2 cut(s) 1163, 1338
SmiMI CAYNNNNRTG 1 cut(s) 638
SmlI CTYRAG 1 cut(s) 305
SmoI CTYRAG 1 cut(s) 305
Sse9I AATT 6 cut(s) 107, 539, 558, 855, 1113, 1269
SseBI AGGCCT 1 cut(s) 1238
SspMI CTAG 1 cut(s) 15
StuI AGGCCT 1 cut(s) 1238
StyD4I CCNGG 3 cut(s) 273, 519, 1153
TaaI ACNGT 2 cut(s) 604, 1358
TaiI ACGT 4 cut(s) 273, 436, 777, 984
TaqI TCGA 2 cut(s) 226, 985
TasI AATT 6 cut(s) 107, 539, 558, 855, 1113, 1269
TauI GCSGC 6 cut(s) 64, 173, 176, 415, 691, 1029
TfiI GAWTC 1 cut(s) 233
Tru1I TTAA 4 cut(s) 480, 1046, 1242, 1353
Tru9I TTAA 4 cut(s) 480, 1046, 1242, 1353
TscAI CASTG 3 cut(s) 601, 632, 1302
TseFI GTSAC 1 cut(s) 1251
TseI GCWGC 3 cut(s) 5, 1004, 1037
Tsp45I GTSAC 1 cut(s) 1251
TspDTI ATGAA 3 cut(s) 1116, 1239, 1373
TspRI CASTG 3 cut(s) 601, 632, 1302
Van91I CCANNNNNTGG 1 cut(s) 655
VpaK11BI GGWCC 2 cut(s) 1163, 1338
XapI RAATTY 1 cut(s) 107
XceI RCATGY 1 cut(s) 1037
XcmI CCANNNNNNNNNTGG 1 cut(s) 854
XmnI GAANNNNTTC 1 cut(s) 50
XspI CTAG 1 cut(s) 15
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.