Rw5G023880

tryptophan synthase

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
Physical Location & Seq
Reverse (-)
33809982 .. 33813936
3955 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G023880.1

Sequence Viewer

Length: 1425 bp
ATGGCAGCCTCCGCTAGCTCAACCACAGCTTGCAAAACCCAGCCGAACCTAATCACCGCGCCGCTCTCAAAACCTTACTCCTCCCGACTGCCCTTCAAGTTCCGGAAATTTACCTCCCGTGCCACCGCCCCTTCCTCCATCTCCTGCACTCTCGCCCGAGACTCCGCCGCCGCCGCCGCCGGTCTCCGGATGGATAGCCAGAGCGCAAACGGGTCGCTGGCGGGCCTGCCCCGACCCGATTCCTTTGGCCGGTACGGGAAGTATGGCGGAAAATACGTCCCGGAAACGCTAATGCACGCGCTCACCGAGCTTGAGACGGCGTTTCACGCGCTCGCTCATGACGAGGATTTTCAGACAGAGTTGAATGGCATTTTGAAGGACTATGTTGGCAGGGAGACTCCTCTCTATTTTGCAGAGCGGCTGACTGAACATTACAAACGTCCTAATGGTGAGGGGCCACACATTTACTTGAAAAGAGAGGATCTTAACCATACTGGGGCTCACAAGATCAACAATGCTGTTGCCCAGGCTCTATTAGCTAAGAAATTGGGCAAGAAACGCATAATTGCCGAGACTGGAGCTGGTCAACATGGAGTTGCCACTGCAACGGTCTGTGCTCGGTTTGGATTGCAGTGTATCATCTACATGGGTGCCCAAGATATGGAGAGACAAGCTCTCAATGTTTTCAGAATGCGGCTTCTTGGTGCTGAGGTTAGGGGAGTCCATGCTGGAACAGCCACATTGAAGGATGCTACTTCAGAAGCTATAAGGGACTGGGTTACCAACGTAGAGACAACTCATTATATTTTGGGGTCGGTTGCTGGCCCTCATCCATACCCTATGATGGTTCGTGATTTCCACAAGGTAATTGGTAGAGAAACAAGAAAACAGGCATTGGAAAAGTGGGGTGGGAAACCAGATGTGTTGGTAGCTTGTGTAGGTGGTGGCTCCAATGCTATGGGACTCTTCCATGAGTTTGTGGAAGACAAAGACGTTCGATTGATTGGGGTGGAAGCTGCAGGCTTTGGATTGGACAGCGGCAAACATGCTGCAACCTTAACCAAAGGGGATGTTGGGGTTTTGCATGGAGCTATGAGCTACTTGTTACAGGATGAAGACGGCCAAATTATTGAGCCTCATTCTATAAGTGCAGGCTTGGATTACCCTGGAGTTGGACCAGAGCATAGTTTTCTGAAAGACTTGGGGCGTGCTGAATACTATAGCATTACAGATGATGAAGCATTAGAGGCCTTTAAAAGATTGTCACGACTGGAGGGAATAATTCCGGCTCTGGAGACTTCTCATGCACTGGCCTACTTGGAAAAGCTCTGCCCTACTCTTCCTGATGGGACCAAACTTGTGCTTAACTGTAGTGGCAGAGGGGATAAGGATGTTCATACTGCCATCAAACACTTGAAGGTTTGA

Protein Analysis

474

Amino Acids

51.32

Weight (kDa)

7.7

Isoelectric Point (pI)

31.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PALP PF00291 130 - 458 8.5e-45 Pyridoxal-phosphate dependent enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 650
AccB7I CCANNNNNTGG 1 cut(s) 661
AccBSI CCGCTC 2 cut(s) 64, 418
AccII CGCG 3 cut(s) 59, 299, 329
AccIII TCCGGA 2 cut(s) 102, 186
AclWI GGATC 1 cut(s) 489
AcoI YGGCCR 2 cut(s) 247, 1120
AcsI RAATTY 1 cut(s) 107
AcuI CTGAAG 1 cut(s) 741
AfaI GTAC 1 cut(s) 254
AfiI CCNNNNNNNGG 6 cut(s) 186, 249, 496, 661, 844, 1172
AgsI TTSAA 6 cut(s) 97, 364, 376, 472, 745, 1417
AjnI CCWGG 2 cut(s) 525, 1165
Alw21I GWGCWC 1 cut(s) 619
Alw26I GTCTC 8 cut(s) 153, 188, 308, 389, 566, 661, 785, 1289
AlwI GGATC 1 cut(s) 489
Ama87I CYCGRG 1 cut(s) 156
Aor13HI TCCGGA 2 cut(s) 102, 186
AoxI GGCC 7 cut(s) 223, 247, 455, 823, 1120, 1248, 1311
ApeKI GCWGC 3 cut(s) 5, 1016, 1049
ApoI RAATTY 1 cut(s) 107
AspLEI GCGC 4 cut(s) 61, 206, 301, 331
AspS9I GGNCC 5 cut(s) 223, 455, 824, 1175, 1350
AsuC2I CCSGG 1 cut(s) 281
AsuHPI GGTGA 3 cut(s) 46, 295, 461
AsuNHI GCTAGC 1 cut(s) 14
AvaI CYCGRG 1 cut(s) 156
AvaII GGWCC 2 cut(s) 1175, 1350
BaeGI GKGCMC 1 cut(s) 655
BanI GGYRCC 1 cut(s) 650
BanII GRGCYC 1 cut(s) 502
BbsI GAAGAC 2 cut(s) 990, 1122
Bbv12I GWGCWC 1 cut(s) 619
BbvCI CCTCAGC 1 cut(s) 708
BbvI GCAGC 3 cut(s) 17, 1003, 1036
BccI CCATC 5 cut(s) 146, 184, 838, 1340, 1412
BceAI ACGGC 2 cut(s) 333, 1135
BcgI CGANNNNNNTGC 2 cut(s) 195, 229
BciT130I CCWGG 2 cut(s) 527, 1167
BcnI CCSGG 1 cut(s) 281
BcoDI GTCTC 8 cut(s) 153, 188, 308, 389, 566, 661, 785, 1289
BfaI CTAG 1 cut(s) 15
BfmI CTRYAG 3 cut(s) 1017, 1219, 1369
Bme1390I CCNGG 3 cut(s) 281, 527, 1167
Bme18I GGWCC 2 cut(s) 1175, 1350
BmeT110I CYCGRG 1 cut(s) 156
BmgT120I GGNCC 5 cut(s) 223, 455, 824, 1175, 1350
BmiI GGNNCC 4 cut(s) 456, 652, 949, 1351
BmrFI CCNGG 3 cut(s) 281, 527, 1167
BmrI ACTGGG 2 cut(s) 504, 784
BmsI GCATC 1 cut(s) 739
BmtI GCTAGC 1 cut(s) 18
BmuI ACTGGG 2 cut(s) 504, 784
BpiI GAAGAC 2 cut(s) 990, 1122
BplI GAGNNNNNCTC 2 cut(s) 658, 690
BpmI CTGGAG 4 cut(s) 597, 1188, 1292, 1313
Bpu10I CCTNAGC 1 cut(s) 708
BpuEI CTTGAG 1 cut(s) 332
BpuMI CCSGG 1 cut(s) 281
BsaI GGTCTC 1 cut(s) 188
BsaJI CCNNGG 2 cut(s) 525, 1165
BsaWI WCCGGW 2 cut(s) 102, 186
Bsc4I CCNNNNNNNGG 6 cut(s) 186, 249, 496, 661, 844, 1172
Bse118I RCCGGY 2 cut(s) 179, 249
Bse1I ACTGG 5 cut(s) 499, 580, 779, 1275, 1314
BseAI TCCGGA 2 cut(s) 102, 186
BseBI CCWGG 2 cut(s) 527, 1167
BseDI CCNNGG 2 cut(s) 525, 1165
BseGI GGATG 6 cut(s) 195, 754, 829, 1075, 1117, 1396
BseLI CCNNNNNNNGG 6 cut(s) 186, 249, 496, 661, 844, 1172
BseMII CTCAG 1 cut(s) 699
BseNI ACTGG 5 cut(s) 499, 580, 779, 1275, 1314
BseRI GAGGAG 2 cut(s) 70, 390
BseSI GKGCMC 1 cut(s) 655
BseXI GCAGC 3 cut(s) 17, 1003, 1036
BseYI CCCAGC 1 cut(s) 39
BsgI GTGCAG 2 cut(s) 130, 1170
Bsh1236I CGCG 3 cut(s) 59, 299, 329
BshFI GGCC 7 cut(s) 225, 249, 457, 825, 1122, 1250, 1313
BshNI GGYRCC 1 cut(s) 650
BsiHKAI GWGCWC 1 cut(s) 619
BsiHKCI CYCGRG 1 cut(s) 156
BsiSI CCGG 6 cut(s) 103, 180, 187, 250, 281, 1286
BslFI GGGAC 4 cut(s) 263, 785, 975, 1363
BslI CCNNNNNNNGG 6 cut(s) 186, 249, 496, 661, 844, 1172
BsmAI GTCTC 8 cut(s) 153, 188, 308, 389, 566, 661, 785, 1289
BsmBI CGTCTC 1 cut(s) 308
BsmFI GGGAC 4 cut(s) 263, 785, 975, 1363
BsmI GAATGC 1 cut(s) 696
BsnI GGCC 7 cut(s) 225, 249, 457, 825, 1122, 1250, 1313
Bso31I GGTCTC 1 cut(s) 188
BsoBI CYCGRG 1 cut(s) 156
Bsp1286I GDGCHC 3 cut(s) 502, 619, 655
Bsp13I TCCGGA 2 cut(s) 102, 186
Bsp143I GATC 2 cut(s) 481, 507
BspANI GGCC 7 cut(s) 225, 249, 457, 825, 1122, 1250, 1313
BspCNI CTCAG 1 cut(s) 700
BspEI TCCGGA 2 cut(s) 102, 186
BspFNI CGCG 3 cut(s) 59, 299, 329
BspHI TCATGA 1 cut(s) 337
BspLI GGNNCC 4 cut(s) 456, 652, 949, 1351
BspMAI CTGCAG 1 cut(s) 1021
BspOI GCTAGC 1 cut(s) 18
BspPI GGATC 1 cut(s) 489
BspT107I GGYRCC 1 cut(s) 650
BspTNI GGTCTC 1 cut(s) 188
BsrBI CCGCTC 2 cut(s) 64, 418
BsrFI RCCGGY 2 cut(s) 179, 249
BsrI ACTGG 5 cut(s) 499, 580, 779, 1275, 1314
BssAI RCCGGY 2 cut(s) 179, 249
BssECI CCNNGG 2 cut(s) 525, 1165
BssMI GATC 2 cut(s) 481, 507
Bst2UI CCWGG 2 cut(s) 527, 1167
Bst4CI ACNGT 2 cut(s) 610, 1370
Bst6I CTCTTC 2 cut(s) 971, 1344
BstDEI CTNAG 2 cut(s) 540, 708
BstEII GGTNACC 1 cut(s) 778
BstF5I GGATG 6 cut(s) 195, 754, 829, 1075, 1117, 1396
BstFNI CGCG 3 cut(s) 59, 299, 329
BstHHI GCGC 4 cut(s) 61, 206, 301, 331
BstKTI GATC 2 cut(s) 484, 510
BstMAI GTCTC 8 cut(s) 153, 188, 308, 389, 566, 661, 785, 1289
BstMBI GATC 2 cut(s) 481, 507
BstMWI GCNNNNNNNGC 9 cut(s) 11, 173, 176, 307, 326, 536, 558, 734, 1247
BstNI CCWGG 2 cut(s) 527, 1167
BstNSI RCATGY 1 cut(s) 1049
BstPI GGTNACC 1 cut(s) 778
BstSCI CCNGG 3 cut(s) 279, 525, 1165
BstSFI CTRYAG 3 cut(s) 1017, 1219, 1369
BstSLI GKGCMC 1 cut(s) 655
BstUI CGCG 3 cut(s) 59, 299, 329
BstV1I GCAGC 3 cut(s) 17, 1003, 1036
BstV2I GAAGAC 2 cut(s) 990, 1122
BstX2I RGATCY 1 cut(s) 481
BstXI CCANNNNNNTGG 1 cut(s) 958
BstYI RGATCY 1 cut(s) 481
BsuRI GGCC 7 cut(s) 225, 249, 457, 825, 1122, 1250, 1313
BtsCI GGATG 6 cut(s) 195, 754, 829, 1075, 1117, 1396
BtsI GCAGTG 2 cut(s) 600, 638
BtsIMutI CAGTG 3 cut(s) 600, 638, 1307
CciI TCATGA 1 cut(s) 337
CfoI GCGC 4 cut(s) 61, 206, 301, 331
Cfr10I RCCGGY 2 cut(s) 179, 249
Cfr13I GGNCC 5 cut(s) 223, 455, 824, 1175, 1350
Csp6I GTAC 1 cut(s) 253
CviAII CATG 8 cut(s) 338, 590, 646, 725, 971, 1046, 1085, 1304
CviQI GTAC 1 cut(s) 253
DdeI CTNAG 2 cut(s) 540, 708
DpnI GATC 2 cut(s) 483, 509
DpnII GATC 2 cut(s) 481, 507
DraI TTTAAA 1 cut(s) 1255
EaeI YGGCCR 2 cut(s) 247, 1120
Eam1104I CTCTTC 2 cut(s) 971, 1344
EarI CTCTTC 2 cut(s) 971, 1344
EciI GGCGGA 2 cut(s) 154, 282
Eco147I AGGCCT 1 cut(s) 1250
Eco24I GRGCYC 1 cut(s) 502
Eco31I GGTCTC 1 cut(s) 188
Eco47I GGWCC 2 cut(s) 1175, 1350
Eco57I CTGAAG 1 cut(s) 741
Eco88I CYCGRG 1 cut(s) 156
Eco91I GGTNACC 1 cut(s) 778
EcoO65I GGTNACC 1 cut(s) 778
EcoRII CCWGG 2 cut(s) 525, 1165
EcoT38I GRGCYC 1 cut(s) 502
Esp3I CGTCTC 1 cut(s) 308
FaeI CATG 8 cut(s) 341, 593, 649, 728, 974, 1049, 1088, 1307
FaqI GGGAC 4 cut(s) 263, 785, 975, 1363
FatI CATG 8 cut(s) 337, 589, 645, 724, 970, 1045, 1084, 1303
FauI CCCGC 1 cut(s) 214
FokI GGATG 6 cut(s) 202, 761, 816, 1082, 1124, 1403
FriOI GRGCYC 1 cut(s) 502
FspBI CTAG 1 cut(s) 15
GlaI GCGC 4 cut(s) 60, 205, 300, 330
GsaI CCCAGC 1 cut(s) 43
GsuI CTGGAG 4 cut(s) 597, 1188, 1292, 1313
HaeIII GGCC 7 cut(s) 225, 249, 457, 825, 1122, 1250, 1313
HapII CCGG 6 cut(s) 103, 180, 187, 250, 281, 1286
HhaI GCGC 4 cut(s) 61, 206, 301, 331
Hin1II CATG 8 cut(s) 341, 593, 649, 728, 974, 1049, 1088, 1307
Hin6I GCGC 4 cut(s) 59, 204, 299, 329
HinP1I GCGC 4 cut(s) 59, 204, 299, 329
HincII GTYRAC 1 cut(s) 587
HindII GTYRAC 1 cut(s) 587
HinfI GANTC 5 cut(s) 161, 239, 397, 720, 963
HpaII CCGG 6 cut(s) 103, 180, 187, 250, 281, 1286
HphI GGTGA 3 cut(s) 46, 295, 461
Hpy166II GTNNAC 1 cut(s) 587
Hpy188I TCNGA 4 cut(s) 354, 689, 760, 1194
Hpy188III TCNNGA 8 cut(s) 84, 103, 187, 338, 851, 1266, 1292, 1343
Hpy8I GTNNAC 1 cut(s) 587
HpyAV CCTTC 5 cut(s) 103, 141, 370, 739, 1411
HpyCH4III ACNGT 2 cut(s) 610, 1370
HpyCH4IV ACGT 4 cut(s) 276, 439, 786, 993
HpyF10VI GCNNNNNNNGC 9 cut(s) 11, 173, 176, 307, 326, 536, 558, 734, 1247
HpyF3I CTNAG 2 cut(s) 540, 708
HpySE526I ACGT 4 cut(s) 276, 439, 786, 993
Hsp92II CATG 8 cut(s) 341, 593, 649, 728, 974, 1049, 1088, 1307
HspAI GCGC 4 cut(s) 59, 204, 299, 329
Kpn2I TCCGGA 2 cut(s) 102, 186
Kzo9I GATC 2 cut(s) 481, 507
LmnI GCTCC 3 cut(s) 578, 953, 1088
Lsp1109I GCAGC 3 cut(s) 17, 1003, 1036
LweI GCATC 1 cut(s) 739
MaeI CTAG 1 cut(s) 15
MaeII ACGT 4 cut(s) 276, 439, 786, 993
MaeIII GTNAC 3 cut(s) 778, 1104, 1263
MalI GATC 2 cut(s) 483, 509
MbiI CCGCTC 2 cut(s) 64, 418
MboI GATC 2 cut(s) 481, 507
MboII GAAGA 4 cut(s) 958, 995, 1127, 1331
MflI RGATCY 1 cut(s) 481
MhlI GDGCHC 3 cut(s) 502, 619, 655
MluCI AATT 6 cut(s) 107, 545, 564, 867, 1125, 1281
MlyI GAGTC 4 cut(s) 155, 391, 729, 957
MmeI TCCRAC 1 cut(s) 1153
MroI TCCGGA 2 cut(s) 102, 186
MseI TTAA 4 cut(s) 486, 1058, 1254, 1365
MslI CAYNNNNRTG 1 cut(s) 644
MspA1I CMGCKG 1 cut(s) 1038
MspI CCGG 6 cut(s) 103, 180, 187, 250, 281, 1286
MspR9I CCNGG 3 cut(s) 281, 527, 1167
Mva1269I GAATGC 1 cut(s) 696
MvaI CCWGG 2 cut(s) 527, 1167
MvnI CGCG 3 cut(s) 59, 299, 329
MwoI GCNNNNNNNGC 9 cut(s) 11, 173, 176, 307, 326, 536, 558, 734, 1247
NciI CCSGG 1 cut(s) 281
NdeII GATC 2 cut(s) 481, 507
NheI GCTAGC 1 cut(s) 14
NlaIII CATG 8 cut(s) 341, 593, 649, 728, 974, 1049, 1088, 1307
NlaIV GGNNCC 4 cut(s) 456, 652, 949, 1351
NmeAIII GCCGAG 1 cut(s) 595
NmuCI GTSAC 1 cut(s) 1263
NspI RCATGY 1 cut(s) 1049
PagI TCATGA 1 cut(s) 337
PceI AGGCCT 1 cut(s) 1250
PcsI WCGNNNNNNNCGW 2 cut(s) 303, 339
PctI GAATGC 1 cut(s) 696
PfeI GAWTC 1 cut(s) 239
PflMI CCANNNNNTGG 1 cut(s) 661
PfoI TCCNGGA 1 cut(s) 279
PleI GAGTC 4 cut(s) 155, 391, 728, 957
PpsI GAGTC 4 cut(s) 155, 391, 728, 957
Psp6I CCWGG 2 cut(s) 525, 1165
PspEI GGTNACC 1 cut(s) 778
PspFI CCCAGC 1 cut(s) 39
PspGI CCWGG 2 cut(s) 525, 1165
PspN4I GGNNCC 4 cut(s) 456, 652, 949, 1351
PspPI GGNCC 5 cut(s) 223, 455, 824, 1175, 1350
PstI CTGCAG 1 cut(s) 1021
PsuI RGATCY 1 cut(s) 481
RsaI GTAC 1 cut(s) 254
RsaNI GTAC 1 cut(s) 253
RseI CAYNNNNRTG 1 cut(s) 644
SaqAI TTAA 4 cut(s) 486, 1058, 1254, 1365
Sau3AI GATC 2 cut(s) 481, 507
Sau96I GGNCC 5 cut(s) 223, 455, 824, 1175, 1350
SchI GAGTC 4 cut(s) 155, 391, 729, 957
ScrFI CCNGG 3 cut(s) 281, 527, 1167
SduI GDGCHC 3 cut(s) 502, 619, 655
SfaNI GCATC 1 cut(s) 739
SfcI CTRYAG 3 cut(s) 1017, 1219, 1369
SinI GGWCC 2 cut(s) 1175, 1350
SmiMI CAYNNNNRTG 1 cut(s) 644
SmlI CTYRAG 1 cut(s) 311
SmoI CTYRAG 1 cut(s) 311
Sse9I AATT 6 cut(s) 107, 545, 564, 867, 1125, 1281
SseBI AGGCCT 1 cut(s) 1250
SspMI CTAG 1 cut(s) 15
StuI AGGCCT 1 cut(s) 1250
StyD4I CCNGG 3 cut(s) 279, 525, 1165
TaaI ACNGT 2 cut(s) 610, 1370
TaiI ACGT 4 cut(s) 279, 442, 789, 996
TaqI TCGA 1 cut(s) 997
TasI AATT 6 cut(s) 107, 545, 564, 867, 1125, 1281
TauI GCSGC 8 cut(s) 64, 170, 173, 176, 179, 421, 697, 1041
TfiI GAWTC 1 cut(s) 239
Tru1I TTAA 4 cut(s) 486, 1058, 1254, 1365
Tru9I TTAA 4 cut(s) 486, 1058, 1254, 1365
TscAI CASTG 3 cut(s) 607, 638, 1314
TseFI GTSAC 1 cut(s) 1263
TseI GCWGC 3 cut(s) 5, 1016, 1049
Tsp45I GTSAC 1 cut(s) 1263
TspDTI ATGAA 3 cut(s) 1128, 1251, 1385
TspRI CASTG 3 cut(s) 607, 638, 1314
Van91I CCANNNNNTGG 1 cut(s) 661
VpaK11BI GGWCC 2 cut(s) 1175, 1350
XapI RAATTY 1 cut(s) 107
XceI RCATGY 1 cut(s) 1049
XcmI CCANNNNNNNNNTGG 1 cut(s) 866
XspI CTAG 1 cut(s) 15
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.