Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0009479

Physical Location & Seq

Genomic Coordinates Reverse (-)

13400680 .. 13401458

Gene Structure 779 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g15220.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGGGTGCCCAAGATATGGATAGGCAGGCCCTCAACGTTTTTCGGATGCGGCTTCTTGGTGCTGAGGTTAGAGCTGTTCATTCTAGAACATCAACACTCAAGGATGCTACTTCAGAAGCTATAAGAGACTGGGTGACTAATGTTGAAACAACTCATTATATTTTGGGTTCCGTAGCTGACCTTTATCCATACCCAATGATGGTTCGCGATTTCCACAAAGTGATTGGTAAAGAAACAAGAGAACAAGCACTTGAAAAATGGGGTGGCAAACCAGATGTACTAGTTGCTTGTGTAGGAGGAGGATCAAATGCTATGGGACTCTTCCATAAGTTCGTTGAAGATAATGATGTTAGATTGATAGGGATAGAGGCTGCAGGCTTGGATTACCCTGGGGTTGGACCGGAGCACAGTTTTCTGAAAGACTTGAGGCGTGCTAAGTACTACAGCGTTACAAACAATGAAGCATTAGAAGCTTTCGAAAAATTGTCACGACTTAAAGGAATAATTCCAGCTTTGGAAACCTCTCATGCACTAGCCTACTTAGAAAAGTTATGCCCTACCCTTCCTAACGAGGCAAAGGTCGTCCTTAACTGTAGTGGGAGAGGAGATAAAGATGTTCATACTGCCATTAAGCACCTCCATTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000162 GO:0003674 GO:0003824 GO:0004834 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006082 GO:0006520 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009308 GO:0009309 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009651 GO:0009683 GO:0009684 GO:0009850 GO:0009851 GO:0009941 GO:0009987 GO:0010817 GO:0016020 GO:0016053 GO:0016829 GO:0016835 GO:0016836 GO:0018130 GO:0019438 GO:0019752 GO:0019904 GO:0031967 GO:0031975 GO:0032787 GO:0034641 GO:0034754 GO:0042401 GO:0042430 GO:0042435 GO:0042445 GO:0042446 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046219 GO:0046394 GO:0046483 GO:0050896 GO:0065007 GO:0065008 GO:0071704 GO:0071944 GO:0072330 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00260 ko00400 ko01100 ko01110 ko01130 ko01230 map00260 map00400 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

PALP

Protein Analysis

216

Amino Acids

23.89

Weight (kDa)

6.76

Isoelectric Point (pI)

21.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PALP	PF00291	11 - 200	1.2e-17	Pyridoxal-phosphate dependent enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0009479)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27070 AT5G54810
fragaria_vesca	FvH4_2g15220 FvH4_3g22100
malus_domestica	MD03G1208800.v1.1 MD11G1223500.v1.1
prunus_persica	Prupe.4G207900_v2.0.a1
pyrus_communis	pycom03g15780 pycom11g19710
rosa_chinensis	RchiOBHm_Chr5g0037911 RchiOBHm_Chr6g0277971
rosa_laevigata	RLG00000033822
rosa_multiflora	Rmu_sc0001474.1_g000007 Rmu_sc0005416.1_g000042
rosa_roxburghii	Rroxscaffold_1G00042990 Rroxscaffold_7G00190640
rosa_rugosa	Rorug05G0169100
rosa_samantha	Rh5AG257600 Rh6CG230100 Rh6DG220900
rosa_wichuraiana	Rw5G023880 Rw6G019520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	5
AccB7I	CCANNNNNTGG	1 cut(s)	16
AccII	CGCG	1 cut(s)	207
AciI	CCGC	1 cut(s)	49
AclI	AACGTT	1 cut(s)	36
AclWI	GGATC	1 cut(s)	310
AcuI	CTGAAG	1 cut(s)	96
AdeI	CACNNNGTG	1 cut(s)	220
AfaI	GTAC	2 cut(s)	279, 440
AfiI	CCNNNNNNNGG	3 cut(s)	16, 199, 395
AgsI	TTSAA	3 cut(s)	146, 254, 338
AhlI	ACTAGT	1 cut(s)	280
AjnI	CCWGG	1 cut(s)	388
AluBI	AGCT	5 cut(s)	74, 119, 176, 473, 512
AluI	AGCT	5 cut(s)	74, 119, 176, 473, 512
Alw21I	GWGCWC	1 cut(s)	408
Alw26I	GTCTC	1 cut(s)	120
AlwI	GGATC	1 cut(s)	310
AoxI	GGCC	1 cut(s)	27
ApeKI	GCWGC	1 cut(s)	371
AspS9I	GGNCC	2 cut(s)	28, 398
AsuHPI	GGTGA	1 cut(s)	145
AsuII	TTCGAA	1 cut(s)	477
AvaII	GGWCC	1 cut(s)	398
BaeGI	GKGCMC	1 cut(s)	10
BanI	GGYRCC	1 cut(s)	5
Bbv12I	GWGCWC	1 cut(s)	408
BbvCI	CCTCAGC	1 cut(s)	63
BbvI	GCAGC	1 cut(s)	358
BccI	CCATC	1 cut(s)	193
BciT130I	CCWGG	1 cut(s)	390
BcoDI	GTCTC	1 cut(s)	120
BcuI	ACTAGT	1 cut(s)	280
BfaI	CTAG	3 cut(s)	84, 281, 533
BfmI	CTRYAG	3 cut(s)	372, 442, 592
BisI	GCNGC	2 cut(s)	50, 372
BlsI	GCNGC	2 cut(s)	51, 373
BmcAI	AGTACT	1 cut(s)	440
Bme1390I	CCNGG	1 cut(s)	390
Bme18I	GGWCC	1 cut(s)	398
BmgT120I	GGNCC	2 cut(s)	28, 398
BmiI	GGNNCC	2 cut(s)	7, 169
BmrFI	CCNGG	1 cut(s)	390
BmrI	ACTGGG	1 cut(s)	139
BmsI	GCATC	2 cut(s)	36, 94
BmuI	ACTGGG	1 cut(s)	139
Bpu10I	CCTNAGC	1 cut(s)	63
Bpu14I	TTCGAA	1 cut(s)	477
BpuEI	CTTGAG	2 cut(s)	83, 445
BsaJI	CCNNGG	2 cut(s)	388, 389
BsaWI	WCCGGW	1 cut(s)	400
Bsc4I	CCNNNNNNNGG	3 cut(s)	16, 199, 395
Bse1I	ACTGG	1 cut(s)	134
BseBI	CCWGG	1 cut(s)	390
BseDI	CCNNGG	2 cut(s)	388, 389
BseGI	GGATG	2 cut(s)	51, 109
BseLI	CCNNNNNNNGG	3 cut(s)	16, 199, 395
BseMII	CTCAG	1 cut(s)	54
BseNI	ACTGG	1 cut(s)	134
BseRI	GAGGAG	2 cut(s)	312, 618
BseSI	GKGCMC	1 cut(s)	10
BseXI	GCAGC	1 cut(s)	358
Bsh1236I	CGCG	1 cut(s)	207
BshFI	GGCC	1 cut(s)	29
BshNI	GGYRCC	1 cut(s)	5
BsiHKAI	GWGCWC	1 cut(s)	408
BsiSI	CCGG	1 cut(s)	401
BslFI	GGGAC	1 cut(s)	330
BslI	CCNNNNNNNGG	3 cut(s)	16, 199, 395
BsmAI	GTCTC	1 cut(s)	120
BsmFI	GGGAC	1 cut(s)	330
BsnI	GGCC	1 cut(s)	29
Bsp119I	TTCGAA	1 cut(s)	477
Bsp1286I	GDGCHC	2 cut(s)	10, 408
Bsp143I	GATC	1 cut(s)	302
Bsp68I	TCGCGA	1 cut(s)	207
BspACI	CCGC	1 cut(s)	49
BspANI	GGCC	1 cut(s)	29
BspCNI	CTCAG	1 cut(s)	55
BspFNI	CGCG	1 cut(s)	207
BspLI	GGNNCC	2 cut(s)	7, 169
BspMAI	CTGCAG	1 cut(s)	376
BspPI	GGATC	1 cut(s)	310
BspT104I	TTCGAA	1 cut(s)	477
BspT107I	GGYRCC	1 cut(s)	5
BsrI	ACTGG	1 cut(s)	134
BssECI	CCNNGG	2 cut(s)	388, 389
BssMI	GATC	1 cut(s)	302
Bst2UI	CCWGG	1 cut(s)	390
Bst4CI	ACNGT	2 cut(s)	410, 593
Bst6I	CTCTTC	1 cut(s)	326
BstBI	TTCGAA	1 cut(s)	477
BstC8I	GCNNGC	3 cut(s)	27, 376, 432
BstDEI	CTNAG	3 cut(s)	63, 435, 541
BstF5I	GGATG	2 cut(s)	51, 109
BstFNI	CGCG	1 cut(s)	207
BstKTI	GATC	1 cut(s)	305
BstMAI	GTCTC	1 cut(s)	120
BstMBI	GATC	1 cut(s)	302
BstMWI	GCNNNNNNNGC	1 cut(s)	470
BstNI	CCWGG	1 cut(s)	390
BstSCI	CCNGG	1 cut(s)	388
BstSFI	CTRYAG	3 cut(s)	372, 442, 592
BstSLI	GKGCMC	1 cut(s)	10
BstUI	CGCG	1 cut(s)	207
BstV1I	GCAGC	1 cut(s)	358
BsuRI	GGCC	1 cut(s)	29
BtsCI	GGATG	2 cut(s)	51, 109
BtuMI	TCGCGA	1 cut(s)	207
Cac8I	GCNNGC	3 cut(s)	27, 376, 432
Cfr13I	GGNCC	2 cut(s)	28, 398
Csp6I	GTAC	2 cut(s)	278, 439
CviAII	CATG	1 cut(s)	527
CviQI	GTAC	2 cut(s)	278, 439
DdeI	CTNAG	3 cut(s)	63, 435, 541
DpnI	GATC	1 cut(s)	304
DpnII	GATC	1 cut(s)	302
DraIII	CACNNNGTG	1 cut(s)	220
Eam1104I	CTCTTC	1 cut(s)	326
EarI	CTCTTC	1 cut(s)	326
Eco47I	GGWCC	1 cut(s)	398
Eco57I	CTGAAG	1 cut(s)	96
EcoO109I	RGGNCCY	1 cut(s)	28
EcoRII	CCWGG	1 cut(s)	388
FaeI	CATG	1 cut(s)	530
FaiI	YATR	9 cut(s)	17, 122, 159, 190, 314, 327, 528, 553, 621
FaqI	GGGAC	1 cut(s)	330
FatI	CATG	1 cut(s)	526
Fnu4HI	GCNGC	2 cut(s)	50, 372
FokI	GGATG	2 cut(s)	58, 116
Fsp4HI	GCNGC	2 cut(s)	50, 372
FspBI	CTAG	3 cut(s)	84, 281, 533
GluI	GCNGC	2 cut(s)	50, 372
HaeIII	GGCC	1 cut(s)	29
HapII	CCGG	1 cut(s)	401
Hin1II	CATG	1 cut(s)	530
HindIII	AAGCTT	1 cut(s)	471
HinfI	GANTC	1 cut(s)	318
HpaII	CCGG	1 cut(s)	401
HphI	GGTGA	1 cut(s)	145
Hpy188I	TCNGA	3 cut(s)	45, 115, 417
Hpy188III	TCNNGA	3 cut(s)	84, 206, 489
HpyAV	CCTTC	1 cut(s)	572
HpyCH4III	ACNGT	2 cut(s)	410, 593
HpyCH4IV	ACGT	1 cut(s)	36
HpyCH4V	TGCA	2 cut(s)	374, 530
HpyF10VI	GCNNNNNNNGC	1 cut(s)	470
HpyF3I	CTNAG	3 cut(s)	63, 435, 541
HpySE526I	ACGT	1 cut(s)	36
Hsp92II	CATG	1 cut(s)	530
Kzo9I	GATC	1 cut(s)	302
LmnI	GCTCC	1 cut(s)	403
LpnPI	CCDG	8 cut(s)	11, 115, 285, 360, 375, 402, 414, 522
Lsp1109I	GCAGC	1 cut(s)	358
LweI	GCATC	2 cut(s)	36, 94
MaeI	CTAG	3 cut(s)	84, 281, 533
MaeII	ACGT	1 cut(s)	36
MaeIII	GTNAC	3 cut(s)	133, 448, 486
MalI	GATC	1 cut(s)	304
MboI	GATC	1 cut(s)	302
MboII	GAAGA	2 cut(s)	313, 350
MhlI	GDGCHC	2 cut(s)	10, 408
MluCI	AATT	2 cut(s)	482, 504
MlyI	GAGTC	1 cut(s)	312
MmeI	TCCRAC	1 cut(s)	376
MseI	TTAA	3 cut(s)	495, 588, 630
MspI	CCGG	1 cut(s)	401
MspR9I	CCNGG	1 cut(s)	390
MvaI	CCWGG	1 cut(s)	390
MvnI	CGCG	1 cut(s)	207
MwoI	GCNNNNNNNGC	1 cut(s)	470
NdeII	GATC	1 cut(s)	302
NlaIII	CATG	1 cut(s)	530
NlaIV	GGNNCC	2 cut(s)	7, 169
NmuCI	GTSAC	2 cut(s)	133, 486
NruI	TCGCGA	1 cut(s)	207
NspV	TTCGAA	1 cut(s)	477
PasI	CCCWGGG	1 cut(s)	389
PflMI	CCANNNNNTGG	1 cut(s)	16
PkrI	GCNGC	2 cut(s)	51, 373
PleI	GAGTC	1 cut(s)	312
PpsI	GAGTC	1 cut(s)	312
Psp1406I	AACGTT	1 cut(s)	36
Psp6I	CCWGG	1 cut(s)	388
PspGI	CCWGG	1 cut(s)	388
PspN4I	GGNNCC	2 cut(s)	7, 169
PspPI	GGNCC	2 cut(s)	28, 398
PstI	CTGCAG	1 cut(s)	376
RruI	TCGCGA	1 cut(s)	207
RsaI	GTAC	2 cut(s)	279, 440
RsaNI	GTAC	2 cut(s)	278, 439
SaqAI	TTAA	3 cut(s)	495, 588, 630
SatI	GCNGC	2 cut(s)	50, 372
Sau3AI	GATC	1 cut(s)	302
Sau96I	GGNCC	2 cut(s)	28, 398
ScaI	AGTACT	1 cut(s)	440
SchI	GAGTC	1 cut(s)	312
ScrFI	CCNGG	1 cut(s)	390
SduI	GDGCHC	2 cut(s)	10, 408
SfaNI	GCATC	2 cut(s)	36, 94
SfcI	CTRYAG	3 cut(s)	372, 442, 592
SfuI	TTCGAA	1 cut(s)	477
SinI	GGWCC	1 cut(s)	398
SmlI	CTYRAG	2 cut(s)	98, 424
SmoI	CTYRAG	2 cut(s)	98, 424
SpeI	ACTAGT	1 cut(s)	280
Sse9I	AATT	2 cut(s)	482, 504
SsiI	CCGC	1 cut(s)	49
SspMI	CTAG	3 cut(s)	84, 281, 533
StyD4I	CCNGG	1 cut(s)	388
TaaI	ACNGT	2 cut(s)	410, 593
TaiI	ACGT	1 cut(s)	39
TaqI	TCGA	1 cut(s)	477
TasI	AATT	2 cut(s)	482, 504
TatI	WGTACW	2 cut(s)	277, 438
TauI	GCSGC	1 cut(s)	52
Tru1I	TTAA	3 cut(s)	495, 588, 630
Tru9I	TTAA	3 cut(s)	495, 588, 630
TseFI	GTSAC	2 cut(s)	133, 486
TseI	GCWGC	1 cut(s)	371
Tsp45I	GTSAC	2 cut(s)	133, 486
TspDTI	ATGAA	3 cut(s)	68, 474, 608
TspGWI	ACGGA	1 cut(s)	160
Van91I	CCANNNNNTGG	1 cut(s)	16
VpaK11BI	GGWCC	1 cut(s)	398
XbaI	TCTAGA	1 cut(s)	83
XcmI	CCANNNNNNNNNTGG	1 cut(s)	221
XspI	CTAG	3 cut(s)	84, 281, 533
ZrmI	AGTACT	1 cut(s)	440

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.