AT4G27500

ppi1 ppi1 (proton pump interactor 1)

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Forward (+)
13743011 .. 13746211
3201 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G27500.2

Sequence Viewer

Length: 1839 bp
ATGGGTGTTGAAGTTGTAAACTCTGGTGGATTTGAGGTTGCTCCGGCTCCTTTCGAGGGGAAACCTGAGAAGAACGGGAAGCTGGACCAAGGAAAAGGAGATGATGCCCCCATCAATTTTGGTTCAGTCGGTGAGCTACCAAAGAATGCCGAAGAGAATAATAACAAAGTGGTCAACTCTGATGCACCCAAAAATGCAGCAGAAGAGTGGCCTGTGGCTAAGCAGATCCACTCTTTCTACCTTGTTAAATACCGTTCTTACGCTGACCCCAAAATTAAAGCTAAGCTTGATCTAGCTGATAAAGAGCTTGAAAAGTTGAACAAAGCTCGGACTGGAGTTTTGGACAAGTTGAGAGCTAAGAGGGCCGAGAGATCAGAGTTATTTGATCTGCTGGACCCGTTGAAGTCAGAGCGTAAGGGATTCAACACAATGTTTGATGAGAAAAGAAAGGAAATGGAACCATTGCAGCAAGCACTGGGAAAGTTAAGGAGCAATGATGGTGGGAGTGCTCGTGGCCCTGCTATCTGTTCCTCCGAGGAAGAGCTGAATAGTATGATATACAGCTATCAGTATCGGATTCAACATGAAAGCATTCCGTTAACCGAGGAGAAGCAGATTCTCAAAGAGATCAGGCTGCTTGAAGGGACAAGAGATAAGGTCATTGCTAATGCCGCTATGAGAGCCAAAATCAAAGAATCTATGGGTCAGAAGGATGATATCCAAGGTCAAGTTAAGTTAATGGGTGCTGGTTTGGATGGAGTGAAAAAGGAGAGGCAAGCAATTTCAGCAAGGATTAATGAGCTGAGTGAGAAGTTGAAAGCTACCAAAGATGAGATTACGGTACTGGAAAATGAGCTCAAGACTGTGAGCGAAAAGAGAGACAAAGCCTATTCAAACATTCATGACCTCAGGAGGCAACGCGATGAGACGAATTCCGAGTATTACCAAAACCGTACTGTGTTGAACAAAGCTAGAGACTTGGCTGCACAAAAGAACATAAGCGAGCTTGAGGCGCTAGCCAATGCTGAGGTTGAGAAATTTATATCCCTTTGGTGCAGTAAGAAGAATTTCAGAGAAGATTATGAGAAGAGAATCTTGCAATCACTTGATTCTAGGCAGCTGAGCCGAGATGGACGGATGAGGAACCCCGATGAGAAGCCTCTGATTGCTCCAGAGGCAGCACCATCAAAGGCAACGCCTTCTGAAACCGAGGTTGTCCCTAAAGCTAAGGCAAAGCCGCAGCCAAAGGAGGAACCAGTTTCTGCACCTAAACCAGATGCTACTGTTGCTCAGAATACTGAGAAAGCTAAAGATGCAGTAAAAGTAAAGAATGTTGCTGATGATGATGATGATGAAGTATATGGTCTTGGAAAGCCGCAGAAGGAAGAAAAGCCGGTTGATGCAGCTACGGCGAAGGAAATGAGAAAGCAAGAGGAGATTGCTAAAGCCAAGCAAGCCATGGAAAGGAAGAAGAAGCTGGCAGAGAAAGCTGCTGCTAAAGCTGCTATAAGAGCTCAAAAGGAAGCTGAGAAGAAAGAAAAGAAGGAGCAAGAGAAGAAGGCCAAGAAGAAAACCGGAGGCAACACAGAAACCGAGACTGAGGAAGTTCCAGAAGCTTCTGAGGAGGAGATTGAAGCTCCGGTGCAGGAGGAGAAACCGCAGAAGGAAAAAGTCTTCAAGGAGAAACCAATAAGGAACAGGACCCGCGGTAGGGGACCAGAAACGATCCCAAGAGCGATCCTTAAGCGTAAGAAGTCGACTAATTACTGGGTTTATGCTGCTCCAGCGGCTCTGGTGGTACTGTTGCTTCTTGTCTTGGGTTACTACTACGTTCTCTAG

Protein Analysis

612

Amino Acids

68.88

Weight (kDa)

9.04

Isoelectric Point (pI)

42.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 1757
AccII CGCG 2 cut(s) 921, 1707
AciI CCGC 7 cut(s) 672, 1238, 1376, 1658, 1705, 1707, 1787
AclWI GGATC 3 cut(s) 220, 1720, 1732
AcsI RAATTY 3 cut(s) 931, 1037, 1066
AfaI GTAC 3 cut(s) 843, 955, 1800
AfiI CCNNNNNNNGG 4 cut(s) 56, 1464, 1710, 1711
AflII CTTAAG 1 cut(s) 1742
Alw21I GWGCWC 3 cut(s) 511, 858, 1516
Alw26I GTCTC 4 cut(s) 873, 920, 969, 1589
AlwI GGATC 3 cut(s) 220, 1720, 1732
AlwNI CAGNNNCTG 1 cut(s) 1262
AoxI GGCC 4 cut(s) 209, 363, 514, 1560
ApoI RAATTY 3 cut(s) 931, 1037, 1066
ArsI GACNNNNNNTTYG 2 cut(s) 322, 354
AseI ATTAAT 1 cut(s) 795
Asp700I GAANNNNTTC 2 cut(s) 591, 1067
AspLEI GCGC 1 cut(s) 1015
AspS9I GGNCC 6 cut(s) 85, 363, 394, 515, 1701, 1715
AsuHPI GGTGA 1 cut(s) 143
AsuNHI GCTAGC 1 cut(s) 1015
AvaII GGWCC 4 cut(s) 85, 394, 1701, 1715
AxyI CCTNAGG 1 cut(s) 908
BanII GRGCYC 2 cut(s) 858, 1516
BarI GAAGNNNNNNTAC 2 cut(s) 1791, 1823
BauI CACGAG 1 cut(s) 510
BbsI GAAGAC 1 cut(s) 1666
Bbv12I GWGCWC 3 cut(s) 511, 858, 1516
BbvCI CCTCAGC 1 cut(s) 1026
BccI CCATC 5 cut(s) 119, 491, 749, 1124, 1192
BceAI ACGGC 1 cut(s) 1425
BcoDI GTCTC 4 cut(s) 873, 920, 969, 1589
BfaI CTAG 5 cut(s) 293, 972, 1016, 1113, 1837
BfoI RGCGCY 1 cut(s) 1016
BfrI CTTAAG 1 cut(s) 1742
BlpI GCTNAGC 3 cut(s) 219, 282, 1121
Bme18I GGWCC 4 cut(s) 85, 394, 1701, 1715
BmgT120I GGNCC 6 cut(s) 85, 363, 394, 515, 1701, 1715
BmiI GGNNCC 7 cut(s) 48, 396, 459, 1145, 1254, 1703, 1716
BmrI ACTGGG 2 cut(s) 485, 1777
BmsI GCATC 5 cut(s) 94, 172, 1267, 1303, 1390
BmtI GCTAGC 1 cut(s) 1019
BmuI ACTGGG 2 cut(s) 485, 1777
BpiI GAAGAC 1 cut(s) 1666
BpmI CTGGAG 3 cut(s) 354, 1155, 1767
Bpu10I CCTNAGC 2 cut(s) 1026, 1227
Bpu1102I GCTNAGC 3 cut(s) 219, 282, 1121
BpuEI CTTGAG 2 cut(s) 842, 1028
BsaJI CCNNGG 7 cut(s) 88, 534, 603, 721, 1209, 1458, 1705
BsaWI WCCGGW 2 cut(s) 1574, 1639
BsaXI ACNNNNNCTCC 2 cut(s) 496, 526
Bsc4I CCNNNNNNNGG 4 cut(s) 56, 1464, 1710, 1711
Bse118I RCCGGY 1 cut(s) 1393
Bse1I ACTGG 5 cut(s) 337, 480, 849, 1256, 1772
Bse21I CCTNAGG 1 cut(s) 908
Bse3DI GCAATG 3 cut(s) 461, 499, 660
BseDI CCNNGG 7 cut(s) 88, 534, 603, 721, 1209, 1458, 1705
BseGI GGATG 3 cut(s) 718, 760, 1143
BseLI CCNNNNNNNGG 4 cut(s) 56, 1464, 1710, 1711
BseMI GCAATG 3 cut(s) 461, 499, 660
BseNI ACTGG 5 cut(s) 337, 480, 849, 1256, 1772
BseRI GAGGAG 5 cut(s) 620, 1448, 1637, 1640, 1664
BsgI GTGCAG 4 cut(s) 969, 1075, 1248, 1664
Bsh1236I CGCG 2 cut(s) 921, 1707
BshFI GGCC 4 cut(s) 211, 365, 516, 1562
BsiHKAI GWGCWC 3 cut(s) 511, 858, 1516
BsiSI CCGG 4 cut(s) 44, 1394, 1575, 1640
BslFI GGGAC 3 cut(s) 658, 1202, 1728
BslI CCNNNNNNNGG 4 cut(s) 56, 1464, 1710, 1711
BsmAI GTCTC 4 cut(s) 873, 920, 969, 1589
BsmBI CGTCTC 1 cut(s) 920
BsmFI GGGAC 3 cut(s) 658, 1202, 1728
BsmI GAATGC 2 cut(s) 151, 591
BsnI GGCC 4 cut(s) 211, 365, 516, 1562
Bsp1286I GDGCHC 3 cut(s) 511, 858, 1516
Bsp143I GATC 7 cut(s) 225, 289, 371, 385, 627, 1725, 1737
Bsp1720I GCTNAGC 3 cut(s) 219, 282, 1121
Bsp19I CCATGG 1 cut(s) 1458
BspACI CCGC 7 cut(s) 672, 1238, 1376, 1658, 1705, 1707, 1787
BspANI GGCC 4 cut(s) 211, 365, 516, 1562
BspFNI CGCG 2 cut(s) 921, 1707
BspHI TCATGA 1 cut(s) 901
BspLI GGNNCC 7 cut(s) 48, 396, 459, 1145, 1254, 1703, 1716
BspOI GCTAGC 1 cut(s) 1019
BspPI GGATC 3 cut(s) 220, 1720, 1732
BspQI GCTCTTC 1 cut(s) 534
BspTI CTTAAG 1 cut(s) 1742
BsrDI GCAATG 3 cut(s) 461, 499, 660
BsrFI RCCGGY 1 cut(s) 1393
BsrI ACTGG 5 cut(s) 337, 480, 849, 1256, 1772
BssAI RCCGGY 1 cut(s) 1393
BssECI CCNNGG 7 cut(s) 88, 534, 603, 721, 1209, 1458, 1705
BssMI GATC 7 cut(s) 225, 289, 371, 385, 627, 1725, 1737
BssSI CACGAG 1 cut(s) 510
BssT1I CCWWGG 3 cut(s) 88, 721, 1458
Bst2BI CACGAG 1 cut(s) 510
Bst4CI ACNGT 7 cut(s) 254, 841, 865, 953, 958, 1285, 1803
Bst6I CTCTTC 4 cut(s) 147, 198, 534, 1082
BstAFI CTTAAG 1 cut(s) 1742
BstC8I GCNNGC 6 cut(s) 471, 777, 1004, 1017, 1455, 1479
BstDSI CCRYGG 2 cut(s) 1458, 1705
BstF5I GGATG 3 cut(s) 718, 760, 1143
BstFNI CGCG 2 cut(s) 921, 1707
BstH2I RGCGCY 1 cut(s) 1016
BstHHI GCGC 1 cut(s) 1015
BstKTI GATC 7 cut(s) 228, 292, 374, 388, 630, 1728, 1740
BstMAI GTCTC 4 cut(s) 873, 920, 969, 1589
BstMBI GATC 7 cut(s) 225, 289, 371, 385, 627, 1725, 1737
BstUI CGCG 2 cut(s) 921, 1707
BstV2I GAAGAC 1 cut(s) 1666
BstX2I RGATCY 1 cut(s) 225
BstYI RGATCY 1 cut(s) 225
Bsu36I CCTNAGG 1 cut(s) 908
BsuRI GGCC 4 cut(s) 211, 365, 516, 1562
BtgI CCRYGG 2 cut(s) 1458, 1705
BtgZI GCGATG 1 cut(s) 936
BtsCI GGATG 3 cut(s) 718, 760, 1143
BtsIMutI CAGTG 1 cut(s) 473
Cac8I GCNNGC 6 cut(s) 471, 777, 1004, 1017, 1455, 1479
CaiI CAGNNNCTG 1 cut(s) 1262
CciI TCATGA 1 cut(s) 901
CfoI GCGC 1 cut(s) 1015
Cfr10I RCCGGY 1 cut(s) 1393
Cfr13I GGNCC 6 cut(s) 85, 363, 394, 515, 1701, 1715
Cfr42I CCGCGG 1 cut(s) 1708
Csp6I GTAC 3 cut(s) 842, 954, 1799
CspCI CAANNNNNGTGG 2 cut(s) 481, 516
CviAII CATG 3 cut(s) 584, 902, 1459
CviQI GTAC 3 cut(s) 842, 954, 1799
DpnI GATC 7 cut(s) 227, 291, 373, 387, 629, 1727, 1739
DpnII GATC 7 cut(s) 225, 289, 371, 385, 627, 1725, 1737
Eam1104I CTCTTC 4 cut(s) 147, 198, 534, 1082
EarI CTCTTC 4 cut(s) 147, 198, 534, 1082
Ecl136II GAGCTC 2 cut(s) 856, 1514
Eco130I CCWWGG 3 cut(s) 88, 721, 1458
Eco24I GRGCYC 2 cut(s) 858, 1516
Eco32I GATATC 1 cut(s) 718
Eco47I GGWCC 4 cut(s) 85, 394, 1701, 1715
Eco53kI GAGCTC 2 cut(s) 856, 1514
Eco81I CCTNAGG 1 cut(s) 908
EcoICRI GAGCTC 2 cut(s) 856, 1514
EcoO109I RGGNCCY 1 cut(s) 1701
EcoRI GAATTC 1 cut(s) 931
EcoRV GATATC 1 cut(s) 718
EcoT14I CCWWGG 3 cut(s) 88, 721, 1458
EcoT38I GRGCYC 2 cut(s) 858, 1516
ErhI CCWWGG 3 cut(s) 88, 721, 1458
Esp3I CGTCTC 1 cut(s) 920
FaeI CATG 3 cut(s) 587, 905, 1462
FalI AAGNNNNNCTT 4 cut(s) 270, 302, 1079, 1111
FaqI GGGAC 3 cut(s) 658, 1202, 1728
FatI CATG 3 cut(s) 583, 901, 1458
FauI CCCGC 1 cut(s) 1712
FblI GTMKAC 1 cut(s) 1757
FokI GGATG 3 cut(s) 725, 767, 1150
FriOI GRGCYC 2 cut(s) 858, 1516
FspBI CTAG 5 cut(s) 293, 972, 1016, 1113, 1837
GlaI GCGC 1 cut(s) 1014
GsuI CTGGAG 3 cut(s) 354, 1155, 1767
HaeII RGCGCY 1 cut(s) 1016
HaeIII GGCC 4 cut(s) 211, 365, 516, 1562
HapII CCGG 4 cut(s) 44, 1394, 1575, 1640
HhaI GCGC 1 cut(s) 1015
Hin1II CATG 3 cut(s) 587, 905, 1462
Hin6I GCGC 1 cut(s) 1013
HinP1I GCGC 1 cut(s) 1013
HincII GTYRAC 3 cut(s) 175, 600, 1758
HindII GTYRAC 3 cut(s) 175, 600, 1758
HindIII AAGCTT 2 cut(s) 284, 1614
HinfI GANTC 6 cut(s) 420, 577, 616, 695, 1092, 1109
HpaI GTTAAC 1 cut(s) 600
HpaII CCGG 4 cut(s) 44, 1394, 1575, 1640
HphI GGTGA 1 cut(s) 143
Hpy166II GTNNAC 4 cut(s) 19, 175, 600, 1758
Hpy188III TCNNGA 5 cut(s) 859, 902, 910, 1172, 1610
Hpy8I GTNNAC 4 cut(s) 19, 175, 600, 1758
HpyAV CCTTC 8 cut(s) 635, 703, 1209, 1375, 1408, 1537, 1552, 1657
HpyCH4III ACNGT 7 cut(s) 254, 841, 865, 953, 958, 1285, 1803
HpyCH4IV ACGT 1 cut(s) 1830
HpySE526I ACGT 1 cut(s) 1830
Hsp92II CATG 3 cut(s) 587, 905, 1462
HspAI GCGC 1 cut(s) 1013
KspAI GTTAAC 1 cut(s) 600
KspI CCGCGG 1 cut(s) 1708
Kzo9I GATC 7 cut(s) 225, 289, 371, 385, 627, 1725, 1737
LguI GCTCTTC 1 cut(s) 534
LmnI GCTCC 7 cut(s) 46, 52, 489, 1174, 1546, 1642, 1786
LweI GCATC 5 cut(s) 94, 172, 1267, 1303, 1390
MaeI CTAG 5 cut(s) 293, 972, 1016, 1113, 1837
MaeII ACGT 1 cut(s) 1830
MaeIII GTNAC 1 cut(s) 1820
MalI GATC 7 cut(s) 227, 291, 373, 387, 629, 1727, 1739
MboI GATC 7 cut(s) 225, 289, 371, 385, 627, 1725, 1737
MflI RGATCY 1 cut(s) 225
MhlI GDGCHC 3 cut(s) 511, 858, 1516
MluCI AATT 7 cut(s) 115, 273, 780, 931, 1037, 1066, 1762
MroXI GAANNNNTTC 2 cut(s) 591, 1067
MseI TTAA 8 cut(s) 246, 276, 485, 599, 732, 737, 795, 1743
MspA1I CMGCKG 3 cut(s) 1120, 1707, 1787
MspCI CTTAAG 1 cut(s) 1742
MspI CCGG 4 cut(s) 44, 1394, 1575, 1640
Mva1269I GAATGC 2 cut(s) 151, 591
MvnI CGCG 2 cut(s) 921, 1707
NcoI CCATGG 1 cut(s) 1458
NdeII GATC 7 cut(s) 225, 289, 371, 385, 627, 1725, 1737
NheI GCTAGC 1 cut(s) 1015
NlaIII CATG 3 cut(s) 587, 905, 1462
NlaIV GGNNCC 7 cut(s) 48, 396, 459, 1145, 1254, 1703, 1716
NmeAIII GCCGAG 2 cut(s) 391, 1151
PagI TCATGA 1 cut(s) 901
PciSI GCTCTTC 1 cut(s) 534
PctI GAATGC 2 cut(s) 151, 591
PdmI GAANNNNTTC 2 cut(s) 591, 1067
PfeI GAWTC 6 cut(s) 420, 577, 616, 695, 1092, 1109
PpuMI RGGWCCY 1 cut(s) 1701
PshBI ATTAAT 1 cut(s) 795
Psp124BI GAGCTC 2 cut(s) 858, 1516
Psp5II RGGWCCY 1 cut(s) 1701
PspN4I GGNNCC 7 cut(s) 48, 396, 459, 1145, 1254, 1703, 1716
PspPI GGNCC 6 cut(s) 85, 363, 394, 515, 1701, 1715
PspPPI RGGWCCY 1 cut(s) 1701
PstNI CAGNNNCTG 1 cut(s) 1262
PsuI RGATCY 1 cut(s) 225
PvuII CAGCTG 1 cut(s) 1120
RsaI GTAC 3 cut(s) 843, 955, 1800
RsaNI GTAC 3 cut(s) 842, 954, 1799
SacI GAGCTC 2 cut(s) 858, 1516
SacII CCGCGG 1 cut(s) 1708
SalI GTCGAC 1 cut(s) 1756
SapI GCTCTTC 1 cut(s) 534
SaqAI TTAA 8 cut(s) 246, 276, 485, 599, 732, 737, 795, 1743
Sau3AI GATC 7 cut(s) 225, 289, 371, 385, 627, 1725, 1737
Sau96I GGNCC 6 cut(s) 85, 363, 394, 515, 1701, 1715
SduI GDGCHC 3 cut(s) 511, 858, 1516
SfaNI GCATC 5 cut(s) 94, 172, 1267, 1303, 1390
Sfr303I CCGCGG 1 cut(s) 1708
SgrBI CCGCGG 1 cut(s) 1708
SinI GGWCC 4 cut(s) 85, 394, 1701, 1715
SmlI CTYRAG 3 cut(s) 857, 1007, 1742
SmoI CTYRAG 3 cut(s) 857, 1007, 1742
Sse9I AATT 7 cut(s) 115, 273, 780, 931, 1037, 1066, 1762
SsiI CCGC 7 cut(s) 672, 1238, 1376, 1658, 1705, 1707, 1787
SspMI CTAG 5 cut(s) 293, 972, 1016, 1113, 1837
SstI GAGCTC 2 cut(s) 858, 1516
StyI CCWWGG 3 cut(s) 88, 721, 1458
TaaI ACNGT 7 cut(s) 254, 841, 865, 953, 958, 1285, 1803
TaiI ACGT 1 cut(s) 1833
TaqI TCGA 2 cut(s) 54, 1757
TasI AATT 7 cut(s) 115, 273, 780, 931, 1037, 1066, 1762
TauI GCSGC 4 cut(s) 674, 1240, 1378, 1790
TfiI GAWTC 6 cut(s) 420, 577, 616, 695, 1092, 1109
Tru1I TTAA 8 cut(s) 246, 276, 485, 599, 732, 737, 795, 1743
Tru9I TTAA 8 cut(s) 246, 276, 485, 599, 732, 737, 795, 1743
TscAI CASTG 1 cut(s) 480
TspDTI ATGAA 3 cut(s) 600, 890, 1368
TspGWI ACGGA 2 cut(s) 585, 1150
TspRI CASTG 1 cut(s) 480
Vha464I CTTAAG 1 cut(s) 1742
VpaK11BI GGWCC 4 cut(s) 85, 394, 1701, 1715
VspI ATTAAT 1 cut(s) 795
XapI RAATTY 3 cut(s) 931, 1037, 1066
XcmI CCANNNNNNNNNTGG 1 cut(s) 1456
XmiI GTMKAC 1 cut(s) 1757
XmnI GAANNNNTTC 2 cut(s) 591, 1067
XspI CTAG 5 cut(s) 293, 972, 1016, 1113, 1837
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.