Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0008759

Physical Location & Seq

Genomic Coordinates Forward (+)

18698053 .. 18703738

Gene Structure 5686 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g17570.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1380 bp

ATGGGTGTTGAAGTTGTGGGATTTGAGGCGATTCAAGGACCAGTGGGGGATGTCACCGAAGGAGGGAATTCTGCCATGGAAAATGGAAAATTGGATCGAGGTCCGGGCGGTAATGAGCCCATACAGTTTGGATCTCATGGTGATGAATCAGACAAAAAGGAAGTGAATGAGGTTTCGGTTTCAAACTTCCCAAAGGATGCAGTTGATGAGTGGCCTGCCCCCAAGCAGATCCATTATTTCTATTTTGTCAGGCACCGAACAATTGACGATCCAAAAATAAAAGCCAGGATTGATCATGCTTCTAAAGAGGTGAATGAGAGGAATAAAGCCCGTCAAGACATCATTGAAGAACTAAGAGCAAAAAGGATTGAAAGATCAGAATTGATTGAGAAGATTAAGGCTCTGAGGAGTGACAACAGGCAAATTAGGTCAATTGTGGATGAGAAGTTTAAGGATTTACAGCCTCTGCGACAGGCTCTTGGAGAGCTGCGCAGTGCAGACACTGCTAGTCGCAATGGTGGTTTATGTTCATCCGAGGAAGAGCTTAACAGTCGCGAAGTAAAAAAGGAGCAAGATGGTGTTAGGTCCAAAATTAAGCACCTTGATGATGCAGTGAAGGTGATTGACAAGGCAATTGCATCATTGCAGGAAGAGCTGAACATTGCAACTGAGAAGAGGGATAAAGCATTTGAAAATATTCGTCAACTTAGGTTACAGATTGATCAGGCGAATGCTGGCTTTTACCATAGCCGTGGGGTCATGACAAAAGCAAGAAATCTTGCTGCTAAGAACGATGTTAAAGCACTTGAAGCACTTTCACATGAAGAGGTCGAGAAATTTATGTCCCTCTGGAACAGTAACAAGGATTTTAGGGATGATTATGAGAAAAAAATTTTGCTATCTCTCGACAGCCGGAACATGAGTAGGGATGGACGTATAAGAAACCCAGATGAGAAGCCGTTGGTGGTTGTGGAAGCACCTGTAGTAGAGACAGCACCAAAAGCTAATGCAAAACAAGTTAAGGAAGATACCAGATCTGCTCCATCAGATACTTTGCCTGTGCGGAAGGAGCGTGAAAAGAAGGCAAAGAAGAAGTCATCATCTGCACCCGAGAGCAATCCTGAGGAACCGATAGAACCTGTTGCCGAGGTTGCAGAACCCGAAAAGGTAATTGAAAAGGTTGAAGCTCCTGTCCCGGCAAAGGCGAAGGTGCAAAAGGATAACAGTCTGAGGAACAGAGGTCGAGCAAGAGGTTCAGACGCACTACCAAAAGCCATCATGAAGAGGAAGAAGTCGAGTACTAATTATTGGCTATGGGTTGCTCCTGCTGCTTTGTTAGTTGTGTTGTTTCTAGCACTTGGTTACTACTATCTTCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0005911 GO:0008150 GO:0009506 GO:0010155 GO:0012505 GO:0016020 GO:0030054 GO:0031984 GO:0032879 GO:0034762 GO:0034765 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043269 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0051049 GO:0055044 GO:0065007 GO:0071944 GO:0097159 GO:0098827 GO:1901363 GO:1904062

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

460

Amino Acids

51.69

Weight (kDa)

8.84

Isoelectric Point (pI)

56.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008759)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27500 AT4G27500
fragaria_vesca	FvH4_3g19880 FvH4_3g19880 FvH4_3g19880 FvH4_3g19880
malus_domestica	MD03G1228300.v1.1 MD11G1247800.v1.1
prunus_persica	Prupe.4G180600_v2.0.a1
pyrus_communis	pycom03g17570 pycom11g22030
rosa_chinensis	RchiOBHm_Chr5g0033561
rosa_laevigata	RLG00000033478 RLG00000033484
rosa_multiflora	Rmu_sc0003286.1_g000004
rosa_roxburghii	Rroxscaffold_1G00046510
rosa_rugosa	Rorug05G0139600 Rorug05G0140000
rosa_samantha	Rh5AG231700 Rh5BG232500 Rh5CG261200 Rh5DG238000
rosa_wichuraiana	Rw5G021140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	491
AccB1I	GGYRCC	1 cut(s)	252
AccII	CGCG	1 cut(s)	555
AciI	CCGC	2 cut(s)	108, 1063
AclWI	GGATC	4 cut(s)	102, 139, 223, 263
AcsI	RAATTY	3 cut(s)	67, 836, 891
AfaI	GTAC	1 cut(s)	1300
AfiI	CCNNNNNNNGG	2 cut(s)	63, 1201
AgsI	TTSAA	9 cut(s)	11, 35, 183, 347, 371, 692, 809, 1175, 1184
AjnI	CCWGG	1 cut(s)	284
AluBI	AGCT	5 cut(s)	487, 544, 655, 1004, 1187
AluI	AGCT	5 cut(s)	487, 544, 655, 1004, 1187
Alw26I	GTCTC	1 cut(s)	983
AlwI	GGATC	4 cut(s)	102, 139, 223, 263
AlwNI	CAGNNNCTG	2 cut(s)	466, 503
Ama87I	CYCGRG	1 cut(s)	1109
AoxI	GGCC	1 cut(s)	212
ApeKI	GCWGC	3 cut(s)	487, 782, 1328
ApoI	RAATTY	3 cut(s)	67, 836, 891
ArsI	GACNNNNNNTTYG	2 cut(s)	1079, 1111
Asp700I	GAANNNNTTC	1 cut(s)	696
AspLEI	GCGC	1 cut(s)	492
AspS9I	GGNCC	3 cut(s)	38, 101, 585
AsuC2I	CCSGG	2 cut(s)	105, 1196
AsuHPI	GGTGA	4 cut(s)	46, 152, 322, 631
AvaI	CYCGRG	1 cut(s)	1109
AvaII	GGWCC	3 cut(s)	38, 101, 585
AxyI	CCTNAGG	1 cut(s)	1122
BanI	GGYRCC	1 cut(s)	252
BanII	GRGCYC	1 cut(s)	120
BbvI	GCAGC	3 cut(s)	474, 769, 1315
BccI	CCATC	4 cut(s)	569, 923, 1051, 1283
BceAI	ACGGC	2 cut(s)	735, 943
BciT130I	CCWGG	1 cut(s)	286
BclI	TGATCA	2 cut(s)	292, 721
BcnI	CCSGG	2 cut(s)	105, 1196
BcoDI	GTCTC	1 cut(s)	983
BfaI	CTAG	2 cut(s)	507, 1352
BfmI	CTRYAG	1 cut(s)	981
BglII	AGATCT	1 cut(s)	1034
BisI	GCNGC	3 cut(s)	488, 783, 1329
BlsI	GCNGC	3 cut(s)	489, 784, 1330
BmcAI	AGTACT	1 cut(s)	1300
Bme1390I	CCNGG	3 cut(s)	105, 286, 1196
Bme18I	GGWCC	3 cut(s)	38, 101, 585
BmeT110I	CYCGRG	1 cut(s)	1109
BmgT120I	GGNCC	3 cut(s)	38, 101, 585
BmiI	GGNNCC	2 cut(s)	254, 1128
BmrFI	CCNGG	3 cut(s)	105, 286, 1196
BmsI	GCATC	3 cut(s)	187, 598, 647
BpuMI	CCSGG	2 cut(s)	105, 1196
BsaJI	CCNNGG	4 cut(s)	75, 534, 751, 1146
Bsc4I	CCNNNNNNNGG	2 cut(s)	63, 1201
Bse1I	ACTGG	1 cut(s)	41
Bse21I	CCTNAGG	1 cut(s)	1122
Bse3DI	GCAATG	3 cut(s)	520, 641, 660
BseBI	CCWGG	1 cut(s)	286
BseDI	CCNNGG	4 cut(s)	75, 534, 751, 1146
BseGI	GGATG	6 cut(s)	55, 202, 445, 530, 880, 934
BseLI	CCNNNNNNNGG	2 cut(s)	63, 1201
BseMI	GCAATG	3 cut(s)	520, 641, 660
BseMII	CTCAG	4 cut(s)	395, 660, 1113, 1220
BseNI	ACTGG	1 cut(s)	41
BseRI	GAGGAG	1 cut(s)	421
BseXI	GCAGC	3 cut(s)	474, 769, 1315
BsgI	GTGCAG	2 cut(s)	516, 1089
Bsh1236I	CGCG	1 cut(s)	555
BshFI	GGCC	1 cut(s)	214
BshNI	GGYRCC	1 cut(s)	252
BsiHKCI	CYCGRG	1 cut(s)	1109
BsiSI	CCGG	3 cut(s)	104, 913, 1196
BslFI	GGGAC	2 cut(s)	829, 1178
BslI	CCNNNNNNNGG	2 cut(s)	63, 1201
BsmAI	GTCTC	1 cut(s)	983
BsmFI	GGGAC	2 cut(s)	829, 1178
BsmI	GAATGC	1 cut(s)	736
BsnI	GGCC	1 cut(s)	214
BsoBI	CYCGRG	1 cut(s)	1109
Bsp1286I	GDGCHC	1 cut(s)	120
Bsp143I	GATC	8 cut(s)	94, 131, 228, 268, 292, 374, 721, 1034
Bsp19I	CCATGG	1 cut(s)	75
Bsp68I	TCGCGA	1 cut(s)	555
BspACI	CCGC	2 cut(s)	108, 1063
BspANI	GGCC	1 cut(s)	214
BspCNI	CTCAG	4 cut(s)	396, 661, 1114, 1221
BspFNI	CGCG	1 cut(s)	555
BspHI	TCATGA	2 cut(s)	759, 1278
BspLI	GGNNCC	2 cut(s)	254, 1128
BspPI	GGATC	4 cut(s)	102, 139, 223, 263
BspQI	GCTCTTC	2 cut(s)	534, 645
BspT107I	GGYRCC	1 cut(s)	252
BsrDI	GCAATG	3 cut(s)	520, 641, 660
BsrI	ACTGG	1 cut(s)	41
BssECI	CCNNGG	4 cut(s)	75, 534, 751, 1146
BssMI	GATC	8 cut(s)	94, 131, 228, 268, 292, 374, 721, 1034
BssT1I	CCWWGG	1 cut(s)	75
Bst2UI	CCWGG	1 cut(s)	286
Bst4CI	ACNGT	4 cut(s)	126, 551, 857, 1226
Bst6I	CTCTTC	5 cut(s)	534, 645, 668, 819, 1277
BstAPI	GCANNNNNTGC	1 cut(s)	503
BstC8I	GCNNGC	2 cut(s)	216, 736
BstDEI	CTNAG	7 cut(s)	353, 404, 669, 707, 786, 1122, 1229
BstDSI	CCRYGG	2 cut(s)	75, 751
BstF5I	GGATG	6 cut(s)	55, 202, 445, 530, 880, 934
BstFNI	CGCG	1 cut(s)	555
BstHHI	GCGC	1 cut(s)	492
BstKTI	GATC	8 cut(s)	97, 134, 231, 271, 295, 377, 724, 1037
BstMAI	GTCTC	1 cut(s)	983
BstMBI	GATC	8 cut(s)	94, 131, 228, 268, 292, 374, 721, 1034
BstMWI	GCNNNNNNNGC	7 cut(s)	503, 652, 809, 1001, 1069, 1151, 1328
BstNI	CCWGG	1 cut(s)	286
BstSCI	CCNGG	3 cut(s)	103, 284, 1194
BstSFI	CTRYAG	1 cut(s)	981
BstUI	CGCG	1 cut(s)	555
BstV1I	GCAGC	3 cut(s)	474, 769, 1315
BstX2I	RGATCY	3 cut(s)	131, 228, 1034
BstXI	CCANNNNNNTGG	1 cut(s)	752
BstYI	RGATCY	3 cut(s)	131, 228, 1034
Bsu36I	CCTNAGG	1 cut(s)	1122
BsuRI	GGCC	1 cut(s)	214
BtgI	CCRYGG	2 cut(s)	75, 751
BtsCI	GGATG	6 cut(s)	55, 202, 445, 530, 880, 934
BtsI	GCAGTG	3 cut(s)	499, 501, 618
BtsIMutI	CAGTG	4 cut(s)	48, 499, 501, 618
BtuMI	TCGCGA	1 cut(s)	555
Cac8I	GCNNGC	2 cut(s)	216, 736
CaiI	CAGNNNCTG	2 cut(s)	466, 503
CciI	TCATGA	2 cut(s)	759, 1278
CfoI	GCGC	1 cut(s)	492
Cfr13I	GGNCC	3 cut(s)	38, 101, 585
CseI	GACGC	1 cut(s)	1268
Csp6I	GTAC	1 cut(s)	1299
CviAII	CATG	7 cut(s)	76, 137, 296, 760, 821, 919, 1279
CviQI	GTAC	1 cut(s)	1299
DdeI	CTNAG	7 cut(s)	353, 404, 669, 707, 786, 1122, 1229
DpnI	GATC	8 cut(s)	96, 133, 230, 270, 294, 376, 723, 1036
DpnII	GATC	8 cut(s)	94, 131, 228, 268, 292, 374, 721, 1034
Eam1104I	CTCTTC	5 cut(s)	534, 645, 668, 819, 1277
EarI	CTCTTC	5 cut(s)	534, 645, 668, 819, 1277
Eco130I	CCWWGG	1 cut(s)	75
Eco24I	GRGCYC	1 cut(s)	120
Eco47I	GGWCC	3 cut(s)	38, 101, 585
Eco81I	CCTNAGG	1 cut(s)	1122
Eco88I	CYCGRG	1 cut(s)	1109
EcoRI	GAATTC	1 cut(s)	67
EcoRII	CCWGG	1 cut(s)	284
EcoT14I	CCWWGG	1 cut(s)	75
EcoT38I	GRGCYC	1 cut(s)	120
ErhI	CCWWGG	1 cut(s)	75
FaeI	CATG	7 cut(s)	79, 140, 299, 763, 824, 922, 1282
FaqI	GGGAC	2 cut(s)	829, 1178
FatI	CATG	7 cut(s)	75, 136, 295, 759, 820, 918, 1278
FbaI	TGATCA	2 cut(s)	292, 721
Fnu4HI	GCNGC	3 cut(s)	488, 783, 1329
FokI	GGATG	6 cut(s)	62, 209, 452, 517, 887, 941
FriOI	GRGCYC	1 cut(s)	120
Fsp4HI	GCNGC	3 cut(s)	488, 783, 1329
FspBI	CTAG	2 cut(s)	507, 1352
FspI	TGCGCA	1 cut(s)	491
GlaI	GCGC	1 cut(s)	491
GluI	GCNGC	3 cut(s)	488, 783, 1329
HaeIII	GGCC	1 cut(s)	214
HapII	CCGG	3 cut(s)	104, 913, 1196
HgaI	GACGC	1 cut(s)	1268
HhaI	GCGC	1 cut(s)	492
Hin1II	CATG	7 cut(s)	79, 140, 299, 763, 824, 922, 1282
Hin6I	GCGC	1 cut(s)	490
HinP1I	GCGC	1 cut(s)	490
HincII	GTYRAC	1 cut(s)	704
HindII	GTYRAC	1 cut(s)	704
HinfI	GANTC	2 cut(s)	31, 146
HpaII	CCGG	3 cut(s)	104, 913, 1196
HphI	GGTGA	4 cut(s)	46, 152, 322, 631
Hpy166II	GTNNAC	1 cut(s)	704
Hpy188I	TCNGA	7 cut(s)	151, 379, 405, 535, 1048, 1230, 1258
Hpy188III	TCNNGA	8 cut(s)	335, 554, 760, 832, 850, 905, 1121, 1279
Hpy8I	GTNNAC	1 cut(s)	704
HpyAV	CCTTC	5 cut(s)	53, 610, 1060, 1075, 1201
HpyCH4III	ACNGT	4 cut(s)	126, 551, 857, 1226
HpyCH4IV	ACGT	1 cut(s)	934
HpyF10VI	GCNNNNNNNGC	7 cut(s)	503, 652, 809, 1001, 1069, 1151, 1328
HpyF3I	CTNAG	7 cut(s)	353, 404, 669, 707, 786, 1122, 1229
HpySE526I	ACGT	1 cut(s)	934
Hsp92II	CATG	7 cut(s)	79, 140, 299, 763, 824, 922, 1282
HspAI	GCGC	1 cut(s)	490
Ksp22I	TGATCA	2 cut(s)	292, 721
Kzo9I	GATC	8 cut(s)	94, 131, 228, 268, 292, 374, 721, 1034
LguI	GCTCTTC	2 cut(s)	534, 645
LmnI	GCTCC	5 cut(s)	568, 1045, 1069, 1192, 1327
Lsp1109I	GCAGC	3 cut(s)	474, 769, 1315
LweI	GCATC	3 cut(s)	187, 598, 647
MaeI	CTAG	2 cut(s)	507, 1352
MaeII	ACGT	1 cut(s)	934
MaeIII	GTNAC	5 cut(s)	52, 410, 711, 857, 1361
MalI	GATC	8 cut(s)	96, 133, 230, 270, 294, 376, 723, 1036
MboI	GATC	8 cut(s)	94, 131, 228, 268, 292, 374, 721, 1034
MfeI	CAATTG	3 cut(s)	261, 432, 633
MflI	RGATCY	3 cut(s)	131, 228, 1034
MhlI	GDGCHC	1 cut(s)	120
MroXI	GAANNNNTTC	1 cut(s)	696
MseI	TTAA	6 cut(s)	396, 450, 546, 594, 798, 1020
MslI	CAYNNNNRTG	3 cut(s)	141, 603, 750
MspI	CCGG	3 cut(s)	104, 913, 1196
MspR9I	CCNGG	3 cut(s)	105, 286, 1196
MunI	CAATTG	3 cut(s)	261, 432, 633
Mva1269I	GAATGC	1 cut(s)	736
MvaI	CCWGG	1 cut(s)	286
MvnI	CGCG	1 cut(s)	555
MwoI	GCNNNNNNNGC	7 cut(s)	503, 652, 809, 1001, 1069, 1151, 1328
NciI	CCSGG	2 cut(s)	105, 1196
NcoI	CCATGG	1 cut(s)	75
NdeII	GATC	8 cut(s)	94, 131, 228, 268, 292, 374, 721, 1034
NlaIII	CATG	7 cut(s)	79, 140, 299, 763, 824, 922, 1282
NlaIV	GGNNCC	2 cut(s)	254, 1128
NmeAIII	GCCGAG	1 cut(s)	1171
NmuCI	GTSAC	2 cut(s)	52, 410
NruI	TCGCGA	1 cut(s)	555
NsbI	TGCGCA	1 cut(s)	491
PagI	TCATGA	2 cut(s)	759, 1278
PciSI	GCTCTTC	2 cut(s)	534, 645
PctI	GAATGC	1 cut(s)	736
PdmI	GAANNNNTTC	1 cut(s)	696
PfeI	GAWTC	2 cut(s)	31, 146
PkrI	GCNGC	3 cut(s)	489, 784, 1330
Psp6I	CCWGG	1 cut(s)	284
PspGI	CCWGG	1 cut(s)	284
PspN4I	GGNNCC	2 cut(s)	254, 1128
PspPI	GGNCC	3 cut(s)	38, 101, 585
PstNI	CAGNNNCTG	2 cut(s)	466, 503
PsuI	RGATCY	3 cut(s)	131, 228, 1034
RruI	TCGCGA	1 cut(s)	555
RsaI	GTAC	1 cut(s)	1300
RsaNI	GTAC	1 cut(s)	1299
RseI	CAYNNNNRTG	3 cut(s)	141, 603, 750
SapI	GCTCTTC	2 cut(s)	534, 645
SaqAI	TTAA	6 cut(s)	396, 450, 546, 594, 798, 1020
SatI	GCNGC	3 cut(s)	488, 783, 1329
Sau3AI	GATC	8 cut(s)	94, 131, 228, 268, 292, 374, 721, 1034
Sau96I	GGNCC	3 cut(s)	38, 101, 585
ScaI	AGTACT	1 cut(s)	1300
ScrFI	CCNGG	3 cut(s)	105, 286, 1196
SduI	GDGCHC	1 cut(s)	120
SfaNI	GCATC	3 cut(s)	187, 598, 647
SfcI	CTRYAG	1 cut(s)	981
SinI	GGWCC	3 cut(s)	38, 101, 585
SmiMI	CAYNNNNRTG	3 cut(s)	141, 603, 750
SsiI	CCGC	2 cut(s)	108, 1063
SspI	AATATT	1 cut(s)	697
SspMI	CTAG	2 cut(s)	507, 1352
StyD4I	CCNGG	3 cut(s)	103, 284, 1194
StyI	CCWWGG	1 cut(s)	75
TaaI	ACNGT	4 cut(s)	126, 551, 857, 1226
TaiI	ACGT	1 cut(s)	937
TaqI	TCGA	5 cut(s)	97, 831, 906, 1243, 1295
TatI	WGTACW	1 cut(s)	1298
TfiI	GAWTC	2 cut(s)	31, 146
Tru1I	TTAA	6 cut(s)	396, 450, 546, 594, 798, 1020
Tru9I	TTAA	6 cut(s)	396, 450, 546, 594, 798, 1020
TscAI	CASTG	4 cut(s)	48, 499, 508, 618
TseFI	GTSAC	2 cut(s)	52, 410
TseI	GCWGC	3 cut(s)	487, 782, 1328
Tsp45I	GTSAC	2 cut(s)	52, 410
TspDTI	ATGAA	4 cut(s)	159, 519, 837, 1295
TspRI	CASTG	4 cut(s)	48, 499, 508, 618
VpaK11BI	GGWCC	3 cut(s)	38, 101, 585
XapI	RAATTY	3 cut(s)	67, 836, 891
XmnI	GAANNNNTTC	1 cut(s)	696
XspI	CTAG	2 cut(s)	507, 1352
ZrmI	AGTACT	1 cut(s)	1300

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.