Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0008759

Physical Location & Seq

Genomic Coordinates Forward (+)

12714891 .. 12716896

Gene Structure 2006 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0139600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGTCTTCTCGGACTGCATCTGATCAAAACAATTGTGGCATTTGTCTGAGTAGCATGGCAACCCCGAAAGGCCAAGCCATCTTCACTGCCCAATGCTCACACTCCTTCCACTACCCTTGCATTGTCCAGAATGTTCAGCATGGGAATCTTAGTTGCCCCATTTGCCGAGCAATATGGGATAAGCATAATGTTCCTTTCCAACCAAACAACTGGACTACTTCCCCCTCTCAACAAAACAACTCAGGTGATCCCCCTCACCCATGGGGTTCTTTTCCCTCAGCAAAACAACTTGGAATCTCATCCACGATATCTGTTCTTGTCAGCATTTGCGCACCATCTCTTCAAGATACCGATGGCCATGGGAGTACCCCGGTCGACCTTGTGACAGTTCTGGATGTAAGTGGCAGCATGTGTGGCCTAAAGCTTGACCTTGTGAAGTGCGCTGTCAAATTTATCATACAAAACTTGGGGCCTTCAGACCGCCTTTCAATAGTTACATTCTCAACAACTGCTAGAAGAGTCTTTCCTCTCAGAAGAATGTCTGTTGAAGGCCGTGAAAGTGCTGTGCGAGCTGTCAATTCTCTTAGACCAGATAACATGACCAACATTGTGGCAGGACTCGAGATAGGAATTCGGGTCCTTGAAGAACGAAGGGAAAGGAACCCAGTTGCTAGCATCATGCTTTTATCCGATGGTGTGGATTCTTACTGTCATAGTCCAAGCCAACTGTTGGGCCAATTGCCTGCTTCGATTCGCCAACTGCAGGTGCCAATCCATTTGCGAGTCCAGCATCATTGCCGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0005911 GO:0008150 GO:0009506 GO:0010155 GO:0012505 GO:0016020 GO:0030054 GO:0031984 GO:0032879 GO:0034762 GO:0034765 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043269 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0051049 GO:0055044 GO:0065007 GO:0071944 GO:0097159 GO:0098827 GO:1901363 GO:1904062

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

267

Amino Acids

29.1

Weight (kDa)

8.7

Isoelectric Point (pI)

51.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	10 - 56	5.3e-08	Ring finger domain
zf-RING_11	PF17123	11 - 41	4.7e-10	RING-like zinc finger
zf-C3HC4	PF00097	12 - 55	1.1e-07	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_2	PF13923	12 - 55	1.9e-07	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	12 - 53	6.4e-06	RING-type zinc-finger
VWA	PF00092	126 - 242	9.4e-17	von Willebrand factor type A domain
VWA_3	PF13768	126 - 244	3.9e-11	von Willebrand factor type A domain
VWA_2	PF13519	127 - 232	2e-16	von Willebrand factor type A domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008759)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27500 AT4G27500
fragaria_vesca	FvH4_3g19880 FvH4_3g19880 FvH4_3g19880 FvH4_3g19880
malus_domestica	MD03G1228300.v1.1 MD11G1247800.v1.1
prunus_persica	Prupe.4G180600_v2.0.a1
pyrus_communis	pycom03g17570 pycom11g22030
rosa_chinensis	RchiOBHm_Chr5g0033561
rosa_laevigata	RLG00000033478 RLG00000033484
rosa_multiflora	Rmu_sc0003286.1_g000004
rosa_roxburghii	Rroxscaffold_1G00046510
rosa_rugosa	Rorug05G0139600 Rorug05G0140000
rosa_samantha	Rh5AG231700 Rh5BG232500 Rh5CG261200 Rh5DG238000
rosa_wichuraiana	Rw5G021140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	754
Acc16I	TGCGCA	1 cut(s)	331
Acc36I	ACCTGC	1 cut(s)	754
AccB1I	GGYRCC	1 cut(s)	766
AccB7I	CCANNNNNTGG	1 cut(s)	730
AccI	GTMKAC	1 cut(s)	375
AciI	CCGC	2 cut(s)	481, 799
AclWI	GGATC	1 cut(s)	242
AcoI	YGGCCR	1 cut(s)	355
AcsI	RAATTY	2 cut(s)	449, 630
AcuI	CTGAAG	1 cut(s)	459
AfaI	GTAC	1 cut(s)	367
AfiI	CCNNNNNNNGG	2 cut(s)	730, 763
AgsI	TTSAA	4 cut(s)	344, 489, 548, 644
AluBI	AGCT	2 cut(s)	424, 572
AluI	AGCT	2 cut(s)	424, 572
AlwI	GGATC	1 cut(s)	242
Ama87I	CYCGRG	1 cut(s)	620
AoxI	GGCC	6 cut(s)	70, 355, 415, 470, 550, 733
ApeKI	GCWGC	1 cut(s)	405
ApoI	RAATTY	2 cut(s)	449, 630
AspLEI	GCGC	2 cut(s)	332, 443
AspS9I	GGNCC	3 cut(s)	470, 637, 733
AsuC2I	CCSGG	1 cut(s)	371
AsuHPI	GGTGA	2 cut(s)	248, 257
AsuNHI	GCTAGC	1 cut(s)	671
AvaI	CYCGRG	1 cut(s)	620
AvaII	GGWCC	1 cut(s)	637
BalI	TGGCCA	1 cut(s)	357
BanI	GGYRCC	1 cut(s)	766
BbvCI	CCTCAGC	1 cut(s)	277
BbvI	GCAGC	1 cut(s)	417
BccI	CCATC	4 cut(s)	86, 343, 347, 686
BceAI	ACGGC	1 cut(s)	537
BclI	TGATCA	1 cut(s)	22
BcnI	CCSGG	1 cut(s)	371
BfaI	CTAG	3 cut(s)	513, 672, 802
BfmI	CTRYAG	1 cut(s)	761
BfuAI	ACCTGC	1 cut(s)	754
BisI	GCNGC	2 cut(s)	406, 799
BlsI	GCNGC	2 cut(s)	407, 800
Bme1390I	CCNGG	1 cut(s)	371
Bme18I	GGWCC	1 cut(s)	637
BmeT110I	CYCGRG	1 cut(s)	620
BmgT120I	GGNCC	3 cut(s)	470, 637, 733
BmiI	GGNNCC	4 cut(s)	471, 638, 662, 768
BmrFI	CCNGG	1 cut(s)	371
BmrI	ACTGGG	1 cut(s)	659
BmsI	GCATC	3 cut(s)	26, 684, 799
BmtI	GCTAGC	1 cut(s)	675
BmuI	ACTGGG	1 cut(s)	659
Bpu10I	CCTNAGC	1 cut(s)	277
BpuMI	CCSGG	1 cut(s)	371
BsaJI	CCNNGG	3 cut(s)	260, 358, 369
Bsc4I	CCNNNNNNNGG	2 cut(s)	730, 763
Bse1I	ACTGG	2 cut(s)	215, 665
Bse3DI	GCAATG	1 cut(s)	793
BseDI	CCNNGG	3 cut(s)	260, 358, 369
BseGI	GGATG	2 cut(s)	299, 400
BseLI	CCNNNNNNNGG	2 cut(s)	730, 763
BseMI	GCAATG	1 cut(s)	793
BseMII	CTCAG	4 cut(s)	38, 255, 291, 544
BseNI	ACTGG	2 cut(s)	215, 665
BseXI	GCAGC	1 cut(s)	417
Bsh1285I	CGRYCG	1 cut(s)	375
BshFI	GGCC	6 cut(s)	72, 357, 417, 472, 552, 735
BshNI	GGYRCC	1 cut(s)	766
BsiEI	CGRYCG	1 cut(s)	375
BsiHKCI	CYCGRG	1 cut(s)	620
BsiSI	CCGG	1 cut(s)	371
BslI	CCNNNNNNNGG	2 cut(s)	730, 763
BsnI	GGCC	6 cut(s)	72, 357, 417, 472, 552, 735
BsoBI	CYCGRG	1 cut(s)	620
Bsp143I	GATC	2 cut(s)	22, 247
Bsp19I	CCATGG	2 cut(s)	260, 358
BspACI	CCGC	2 cut(s)	481, 799
BspANI	GGCC	6 cut(s)	72, 357, 417, 472, 552, 735
BspCNI	CTCAG	4 cut(s)	39, 254, 290, 543
BspLI	GGNNCC	4 cut(s)	471, 638, 662, 768
BspMAI	CTGCAG	1 cut(s)	765
BspMI	ACCTGC	1 cut(s)	754
BspOI	GCTAGC	1 cut(s)	675
BspPI	GGATC	1 cut(s)	242
BspT107I	GGYRCC	1 cut(s)	766
BsrDI	GCAATG	1 cut(s)	793
BsrI	ACTGG	2 cut(s)	215, 665
BssECI	CCNNGG	3 cut(s)	260, 358, 369
BssMI	GATC	2 cut(s)	22, 247
BssT1I	CCWWGG	2 cut(s)	260, 358
Bst4CI	ACNGT	3 cut(s)	388, 710, 729
Bst6I	CTCTTC	2 cut(s)	345, 511
BstC8I	GCNNGC	3 cut(s)	570, 673, 744
BstDEI	CTNAG	6 cut(s)	47, 149, 241, 277, 530, 584
BstDSI	CCRYGG	2 cut(s)	260, 358
BstF5I	GGATG	2 cut(s)	299, 400
BstHHI	GCGC	2 cut(s)	332, 443
BstKTI	GATC	2 cut(s)	25, 250
BstMBI	GATC	2 cut(s)	22, 247
BstMCI	CGRYCG	1 cut(s)	375
BstMWI	GCNNNNNNNGC	4 cut(s)	162, 414, 569, 787
BstNSI	RCATGY	1 cut(s)	412
BstSCI	CCNGG	1 cut(s)	369
BstSFI	CTRYAG	1 cut(s)	761
BstV1I	GCAGC	1 cut(s)	417
BstXI	CCANNNNNNTGG	2 cut(s)	210, 610
BsuRI	GGCC	6 cut(s)	72, 357, 417, 472, 552, 735
BtgI	CCRYGG	2 cut(s)	260, 358
BtsCI	GGATG	2 cut(s)	299, 400
BtsI	GCAGTG	1 cut(s)	84
BtsIMutI	CAGTG	1 cut(s)	84
BveI	ACCTGC	1 cut(s)	754
Cac8I	GCNNGC	3 cut(s)	570, 673, 744
CfoI	GCGC	2 cut(s)	332, 443
Cfr13I	GGNCC	3 cut(s)	470, 637, 733
Csp6I	GTAC	1 cut(s)	366
CspCI	CAANNNNNGTGG	2 cut(s)	98, 133
CviAII	CATG	7 cut(s)	55, 140, 261, 359, 409, 598, 679
CviQI	GTAC	1 cut(s)	366
DdeI	CTNAG	6 cut(s)	47, 149, 241, 277, 530, 584
DpnI	GATC	2 cut(s)	24, 249
DpnII	GATC	2 cut(s)	22, 247
EaeI	YGGCCR	1 cut(s)	355
Eam1104I	CTCTTC	2 cut(s)	345, 511
EarI	CTCTTC	2 cut(s)	345, 511
Eco130I	CCWWGG	2 cut(s)	260, 358
Eco32I	GATATC	1 cut(s)	309
Eco47I	GGWCC	1 cut(s)	637
Eco57I	CTGAAG	1 cut(s)	459
Eco88I	CYCGRG	1 cut(s)	620
EcoO109I	RGGNCCY	2 cut(s)	470, 637
EcoRI	GAATTC	1 cut(s)	630
EcoRV	GATATC	1 cut(s)	309
EcoT14I	CCWWGG	2 cut(s)	260, 358
ErhI	CCWWGG	2 cut(s)	260, 358
FaeI	CATG	7 cut(s)	58, 143, 264, 362, 412, 601, 682
FatI	CATG	7 cut(s)	54, 139, 260, 358, 408, 597, 678
FbaI	TGATCA	1 cut(s)	22
FblI	GTMKAC	1 cut(s)	375
Fnu4HI	GCNGC	2 cut(s)	406, 799
FokI	GGATG	2 cut(s)	286, 407
Fsp4HI	GCNGC	2 cut(s)	406, 799
FspBI	CTAG	3 cut(s)	513, 672, 802
FspI	TGCGCA	1 cut(s)	331
GlaI	GCGC	2 cut(s)	331, 442
GluI	GCNGC	2 cut(s)	406, 799
HaeIII	GGCC	6 cut(s)	72, 357, 417, 472, 552, 735
HapII	CCGG	1 cut(s)	371
HhaI	GCGC	2 cut(s)	332, 443
Hin1II	CATG	7 cut(s)	58, 143, 264, 362, 412, 601, 682
Hin6I	GCGC	2 cut(s)	330, 441
HinP1I	GCGC	2 cut(s)	330, 441
HincII	GTYRAC	1 cut(s)	376
HindII	GTYRAC	1 cut(s)	376
HindIII	AAGCTT	1 cut(s)	422
HinfI	GANTC	7 cut(s)	145, 294, 519, 618, 701, 751, 783
HpaII	CCGG	1 cut(s)	371
HphI	GGTGA	2 cut(s)	248, 257
Hpy166II	GTNNAC	1 cut(s)	376
Hpy188I	TCNGA	6 cut(s)	12, 22, 48, 478, 533, 691
Hpy188III	TCNNGA	4 cut(s)	127, 344, 392, 622
Hpy8I	GTNNAC	1 cut(s)	376
HpyAV	CCTTC	4 cut(s)	115, 483, 542, 645
HpyCH4III	ACNGT	3 cut(s)	388, 710, 729
HpyCH4V	TGCA	3 cut(s)	17, 120, 763
HpyF10VI	GCNNNNNNNGC	4 cut(s)	162, 414, 569, 787
HpyF3I	CTNAG	6 cut(s)	47, 149, 241, 277, 530, 584
Hsp92II	CATG	7 cut(s)	58, 143, 264, 362, 412, 601, 682
HspAI	GCGC	2 cut(s)	330, 441
Ksp22I	TGATCA	1 cut(s)	22
Kzo9I	GATC	2 cut(s)	22, 247
Lsp1109I	GCAGC	1 cut(s)	417
LweI	GCATC	3 cut(s)	26, 684, 799
MaeI	CTAG	3 cut(s)	513, 672, 802
MaeIII	GTNAC	2 cut(s)	382, 493
MalI	GATC	2 cut(s)	24, 249
MboI	GATC	2 cut(s)	22, 247
MboII	GAAGA	5 cut(s)	73, 332, 528, 546, 656
MfeI	CAATTG	2 cut(s)	31, 737
MlsI	TGGCCA	1 cut(s)	357
MluCI	AATT	5 cut(s)	31, 449, 577, 630, 737
MluNI	TGGCCA	1 cut(s)	357
MlyI	GAGTC	3 cut(s)	528, 612, 792
MmeI	TCCRAC	1 cut(s)	223
MnlI	CCTC	4 cut(s)	235, 264, 286, 537
Mox20I	TGGCCA	1 cut(s)	357
MscI	TGGCCA	1 cut(s)	357
Msp20I	TGGCCA	1 cut(s)	357
MspI	CCGG	1 cut(s)	371
MspR9I	CCNGG	1 cut(s)	371
MunI	CAATTG	2 cut(s)	31, 737
MwoI	GCNNNNNNNGC	4 cut(s)	162, 414, 569, 787
NciI	CCSGG	1 cut(s)	371
NcoI	CCATGG	2 cut(s)	260, 358
NdeII	GATC	2 cut(s)	22, 247
NheI	GCTAGC	1 cut(s)	671
NlaIII	CATG	7 cut(s)	58, 143, 264, 362, 412, 601, 682
NlaIV	GGNNCC	4 cut(s)	471, 638, 662, 768
NmeAIII	GCCGAG	1 cut(s)	191
NmuCI	GTSAC	1 cut(s)	382
NsbI	TGCGCA	1 cut(s)	331
NspI	RCATGY	1 cut(s)	412
PaeR7I	CTCGAG	1 cut(s)	620
PaqCI	CACCTGC	1 cut(s)	754
PfeI	GAWTC	4 cut(s)	145, 294, 701, 751
PflMI	CCANNNNNTGG	1 cut(s)	730
PkrI	GCNGC	2 cut(s)	407, 800
PleI	GAGTC	3 cut(s)	527, 612, 791
PpsI	GAGTC	3 cut(s)	527, 612, 791
PpuMI	RGGWCCY	1 cut(s)	637
Psp5II	RGGWCCY	1 cut(s)	637
PspN4I	GGNNCC	4 cut(s)	471, 638, 662, 768
PspPI	GGNCC	3 cut(s)	470, 637, 733
PspPPI	RGGWCCY	1 cut(s)	637
PstI	CTGCAG	1 cut(s)	765
RsaI	GTAC	1 cut(s)	367
RsaNI	GTAC	1 cut(s)	366
SalI	GTCGAC	1 cut(s)	374
SatI	GCNGC	2 cut(s)	406, 799
Sau3AI	GATC	2 cut(s)	22, 247
Sau96I	GGNCC	3 cut(s)	470, 637, 733
SchI	GAGTC	3 cut(s)	528, 612, 792
ScrFI	CCNGG	1 cut(s)	371
SetI	ASST	6 cut(s)	247, 381, 426, 432, 574, 768
SfaNI	GCATC	3 cut(s)	26, 684, 799
SfcI	CTRYAG	1 cut(s)	761
Sfr274I	CTCGAG	1 cut(s)	620
SinI	GGWCC	1 cut(s)	637
SlaI	CTCGAG	1 cut(s)	620
SmlI	CTYRAG	1 cut(s)	620
SmoI	CTYRAG	1 cut(s)	620
Sse9I	AATT	5 cut(s)	31, 449, 577, 630, 737
SsiI	CCGC	2 cut(s)	481, 799
SspMI	CTAG	3 cut(s)	513, 672, 802
StyD4I	CCNGG	1 cut(s)	369
StyI	CCWWGG	2 cut(s)	260, 358
TaaI	ACNGT	3 cut(s)	388, 710, 729
TaqI	TCGA	3 cut(s)	375, 621, 749
TasI	AATT	5 cut(s)	31, 449, 577, 630, 737
TauI	GCSGC	1 cut(s)	801
TfiI	GAWTC	4 cut(s)	145, 294, 701, 751
TscAI	CASTG	1 cut(s)	91
TseFI	GTSAC	1 cut(s)	382
TseI	GCWGC	1 cut(s)	405
Tsp45I	GTSAC	1 cut(s)	382
TspRI	CASTG	1 cut(s)	91
Van91I	CCANNNNNTGG	1 cut(s)	730
VpaK11BI	GGWCC	1 cut(s)	637
XapI	RAATTY	2 cut(s)	449, 630
XceI	RCATGY	1 cut(s)	412
XhoI	CTCGAG	1 cut(s)	620
XmiI	GTMKAC	1 cut(s)	375
XspI	CTAG	3 cut(s)	513, 672, 802

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.