Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0008759

Physical Location & Seq

Genomic Coordinates Forward (+)

31379261 .. 31380437

Gene Structure 1177 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1228300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGTGTGATATTATCACCCCTTTAATACATTGTTCTGATTTTCAGAATGCTGGCTTTTACCATAGCCGTGGTGTCATGACCAAAGCGAGAAATCTTGCTGCTAAGAACGATGTTAAAGCACTTGAAGCACTTTCACATGAAGAGGTCGAGAAATTTATGTCCCTCTGGAACACTAACAAGGATTTTAGGGATGATTATGAGAAAAAAATTTTGCCATCTCTCGACAGCCGGAACATGAGTAGAGATGGACGTATAAGAAACCCAGATGAGAAGCCGTTGGTGGTTGTGGAAGCACCTGTAGTAGAGACAGCACCAAAAGCTAATGCAAAACAAGTTAAGGAAGATACCAGATCTGCTCCATCAGATACTTCGCCTGTGCGGAAGGTTCAGAAAGAAGCCAAAAATAAAGCAACTGCTCCAAAATCTACTTCAGAGGATACTGACGTGGCAGACGAGGAAATATTTGTTTCTGAAAAGGAAACCCTAAAAGAAAATAAAATTGATCCTGCCAAGTTGAAGGAGATGAAAAGAGTAGAGGAGATTGAAAAAAATAAGCTGGCCTTGGAGAGGAAGAAGAAGAAGGCAGAGAAAGATGCAGCTAAAGCAGCTATTAGAGCTCAGAAGGAAGCCGAGAAGAAGCTGAAGGAAATTATCTATTTATTTATTTATTTTTTTGTAGTAGAGCGTGAAAAGAAGTCAAAGAAGAAATCCTCTGCACCTGAGAACAATCCTGAGGAACCGATAGAACCTGTTGCCGAGGTTGCAGAACCAGAAAAGTTAATTGAAAAGGTTGAAGTTCCTGTCCCGGCAAAGGCGAAGGTGCAAAAGGATAACAGTCTGAGGAACAGAGGTCGAGCAAGAGGTTCAGACGCACTACCAAAAGCCATCATGAAGAGGAAGAAGTCGAGTACTAACTATTGGCTATGGGCCGCTCCTGCTGCTTTGTTAGTTGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0005911 GO:0008150 GO:0009506 GO:0010155 GO:0012505 GO:0016020 GO:0030054 GO:0031984 GO:0032879 GO:0034762 GO:0034765 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043269 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0051049 GO:0055044 GO:0065007 GO:0071944 GO:0097159 GO:0098827 GO:1901363 GO:1904062

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

319

Amino Acids

36.01

Weight (kDa)

9.34

Isoelectric Point (pI)

50.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008759)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27500 AT4G27500
fragaria_vesca	FvH4_3g19880 FvH4_3g19880 FvH4_3g19880 FvH4_3g19880
malus_domestica	MD03G1228300.v1.1 MD11G1247800.v1.1
prunus_persica	Prupe.4G180600_v2.0.a1
pyrus_communis	pycom03g17570 pycom11g22030
rosa_chinensis	RchiOBHm_Chr5g0033561
rosa_laevigata	RLG00000033478 RLG00000033484
rosa_multiflora	Rmu_sc0003286.1_g000004
rosa_roxburghii	Rroxscaffold_1G00046510
rosa_rugosa	Rorug05G0139600 Rorug05G0140000
rosa_samantha	Rh5AG231700 Rh5BG232500 Rh5CG261200 Rh5DG238000
rosa_wichuraiana	Rw5G021140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	932
AciI	CCGC	2 cut(s)	379, 930
AclWI	GGATC	1 cut(s)	497
AcsI	RAATTY	2 cut(s)	152, 207
AcuI	CTGAAG	2 cut(s)	414, 662
AfaI	GTAC	1 cut(s)	910
AfiI	CCNNNNNNNGG	2 cut(s)	567, 811
AgsI	TTSAA	5 cut(s)	125, 517, 545, 785, 794
AjiI	CACGTC	1 cut(s)	445
AjuI	GAANNNNNNNTTGG	2 cut(s)	412, 444
AluBI	AGCT	6 cut(s)	320, 556, 599, 608, 617, 640
AluI	AGCT	6 cut(s)	320, 556, 599, 608, 617, 640
Alw21I	GWGCWC	1 cut(s)	619
Alw26I	GTCTC	1 cut(s)	299
AlwI	GGATC	1 cut(s)	497
AoxI	GGCC	2 cut(s)	558, 927
ApeKI	GCWGC	4 cut(s)	98, 596, 605, 938
ApoI	RAATTY	2 cut(s)	152, 207
AspS9I	GGNCC	1 cut(s)	927
AsuC2I	CCSGG	1 cut(s)	806
AsuHPI	GGTGA	1 cut(s)	7
AxyI	CCTNAGG	1 cut(s)	732
BaeI	ACNNNNGTAYC	2 cut(s)	429, 462
BanII	GRGCYC	1 cut(s)	619
Bbv12I	GWGCWC	1 cut(s)	619
BbvI	GCAGC	4 cut(s)	85, 608, 617, 925
BccI	CCATC	4 cut(s)	223, 239, 367, 893
BceAI	ACGGC	2 cut(s)	51, 259
BciVI	GTATCC	1 cut(s)	430
BcnI	CCSGG	1 cut(s)	806
BcoDI	GTCTC	1 cut(s)	299
BfmI	CTRYAG	1 cut(s)	297
BfuI	GTATCC	1 cut(s)	430
BglII	AGATCT	1 cut(s)	350
BisI	GCNGC	5 cut(s)	99, 597, 606, 930, 939
BlsI	GCNGC	5 cut(s)	100, 598, 607, 931, 940
BmcAI	AGTACT	1 cut(s)	910
Bme1390I	CCNGG	1 cut(s)	806
BmgBI	CACGTC	1 cut(s)	445
BmgT120I	GGNCC	1 cut(s)	927
BmiI	GGNNCC	1 cut(s)	738
BmrFI	CCNGG	1 cut(s)	806
BmsI	GCATC	1 cut(s)	583
BpuMI	CCSGG	1 cut(s)	806
BsaJI	CCNNGG	3 cut(s)	67, 561, 756
Bsc4I	CCNNNNNNNGG	2 cut(s)	567, 811
Bse21I	CCTNAGG	1 cut(s)	732
BseDI	CCNNGG	3 cut(s)	67, 561, 756
BseGI	GGATG	1 cut(s)	196
BseLI	CCNNNNNNNGG	2 cut(s)	567, 811
BseMII	CTCAG	4 cut(s)	632, 711, 723, 830
BseRI	GAGGAG	1 cut(s)	551
BseXI	GCAGC	4 cut(s)	85, 608, 617, 925
BsgI	GTGCAG	1 cut(s)	699
BshFI	GGCC	2 cut(s)	560, 929
BsiHKAI	GWGCWC	1 cut(s)	619
BsiSI	CCGG	2 cut(s)	229, 806
BslFI	GGGAC	2 cut(s)	145, 788
BslI	CCNNNNNNNGG	2 cut(s)	567, 811
BsmAI	GTCTC	1 cut(s)	299
BsmFI	GGGAC	2 cut(s)	145, 788
BsmI	GAATGC	1 cut(s)	52
BsnI	GGCC	2 cut(s)	560, 929
Bsp1286I	GDGCHC	1 cut(s)	619
Bsp143I	GATC	2 cut(s)	350, 502
BspACI	CCGC	2 cut(s)	379, 930
BspANI	GGCC	2 cut(s)	560, 929
BspCNI	CTCAG	4 cut(s)	631, 712, 724, 831
BspHI	TCATGA	2 cut(s)	75, 888
BspLI	GGNNCC	1 cut(s)	738
BspPI	GGATC	1 cut(s)	497
BsrBI	CCGCTC	1 cut(s)	932
BssECI	CCNNGG	3 cut(s)	67, 561, 756
BssMI	GATC	2 cut(s)	350, 502
BssT1I	CCWWGG	1 cut(s)	561
Bst4CI	ACNGT	1 cut(s)	836
Bst6I	CTCTTC	2 cut(s)	135, 887
BstC8I	GCNNGC	2 cut(s)	52, 558
BstDEI	CTNAG	5 cut(s)	102, 618, 720, 732, 839
BstDSI	CCRYGG	1 cut(s)	67
BstENI	CCTNNNNNAGG	1 cut(s)	565
BstF5I	GGATG	1 cut(s)	196
BstKTI	GATC	2 cut(s)	353, 505
BstMAI	GTCTC	1 cut(s)	299
BstMBI	GATC	2 cut(s)	350, 502
BstMWI	GCNNNNNNNGC	8 cut(s)	125, 317, 602, 605, 614, 761, 935, 938
BstSCI	CCNGG	1 cut(s)	804
BstSFI	CTRYAG	1 cut(s)	297
BstV1I	GCAGC	4 cut(s)	85, 608, 617, 925
BstX2I	RGATCY	1 cut(s)	350
BstXI	CCANNNNNNTGG	1 cut(s)	68
BstYI	RGATCY	1 cut(s)	350
Bsu36I	CCTNAGG	1 cut(s)	732
BsuI	GTATCC	1 cut(s)	430
BsuRI	GGCC	2 cut(s)	560, 929
BtgI	CCRYGG	1 cut(s)	67
BtrI	CACGTC	1 cut(s)	445
BtsCI	GGATG	1 cut(s)	196
Cac8I	GCNNGC	2 cut(s)	52, 558
CciI	TCATGA	2 cut(s)	75, 888
Cfr13I	GGNCC	1 cut(s)	927
CseI	GACGC	1 cut(s)	878
Csp6I	GTAC	1 cut(s)	909
CviAII	CATG	4 cut(s)	76, 137, 235, 889
CviQI	GTAC	1 cut(s)	909
DdeI	CTNAG	5 cut(s)	102, 618, 720, 732, 839
DpnI	GATC	2 cut(s)	352, 504
DpnII	GATC	2 cut(s)	350, 502
Eam1104I	CTCTTC	2 cut(s)	135, 887
EarI	CTCTTC	2 cut(s)	135, 887
Ecl136II	GAGCTC	1 cut(s)	617
Eco130I	CCWWGG	1 cut(s)	561
Eco24I	GRGCYC	1 cut(s)	619
Eco53kI	GAGCTC	1 cut(s)	617
Eco57I	CTGAAG	2 cut(s)	414, 662
Eco81I	CCTNAGG	1 cut(s)	732
EcoICRI	GAGCTC	1 cut(s)	617
EcoNI	CCTNNNNNAGG	1 cut(s)	565
EcoT14I	CCWWGG	1 cut(s)	561
EcoT38I	GRGCYC	1 cut(s)	619
ErhI	CCWWGG	1 cut(s)	561
FaeI	CATG	4 cut(s)	79, 140, 238, 892
FaiI	YATR	9 cut(s)	63, 77, 138, 158, 198, 236, 254, 890, 925
FalI	AAGNNNNNCTT	2 cut(s)	545, 577
FaqI	GGGAC	2 cut(s)	145, 788
FatI	CATG	4 cut(s)	75, 136, 234, 888
Fnu4HI	GCNGC	5 cut(s)	99, 597, 606, 930, 939
FokI	GGATG	1 cut(s)	203
FriOI	GRGCYC	1 cut(s)	619
Fsp4HI	GCNGC	5 cut(s)	99, 597, 606, 930, 939
GluI	GCNGC	5 cut(s)	99, 597, 606, 930, 939
HaeIII	GGCC	2 cut(s)	560, 929
HapII	CCGG	2 cut(s)	229, 806
HgaI	GACGC	1 cut(s)	878
Hin1II	CATG	4 cut(s)	79, 140, 238, 892
HpaII	CCGG	2 cut(s)	229, 806
HphI	GGTGA	1 cut(s)	7
Hpy188I	TCNGA	9 cut(s)	37, 45, 364, 390, 433, 472, 621, 840, 868
Hpy188III	TCNNGA	6 cut(s)	76, 148, 166, 221, 731, 889
HpyAV	CCTTC	6 cut(s)	376, 511, 574, 616, 637, 811
HpyCH4III	ACNGT	1 cut(s)	836
HpyCH4IV	ACGT	2 cut(s)	250, 444
HpyCH4V	TGCA	5 cut(s)	326, 596, 716, 764, 823
HpyF10VI	GCNNNNNNNGC	8 cut(s)	125, 317, 602, 605, 614, 761, 935, 938
HpyF3I	CTNAG	5 cut(s)	102, 618, 720, 732, 839
HpySE526I	ACGT	2 cut(s)	250, 444
Hsp92II	CATG	4 cut(s)	79, 140, 238, 892
Kzo9I	GATC	2 cut(s)	350, 502
LmnI	GCTCC	3 cut(s)	361, 421, 937
Lsp1109I	GCAGC	4 cut(s)	85, 608, 617, 925
LweI	GCATC	1 cut(s)	583
MaeII	ACGT	2 cut(s)	250, 444
MalI	GATC	2 cut(s)	352, 504
MbiI	CCGCTC	1 cut(s)	932
MboI	GATC	2 cut(s)	350, 502
MboII	GAAGA	9 cut(s)	152, 353, 583, 586, 589, 646, 715, 904, 910
MflI	RGATCY	1 cut(s)	350
MhlI	GDGCHC	1 cut(s)	619
MluCI	AATT	5 cut(s)	152, 207, 498, 648, 780
MseI	TTAA	4 cut(s)	23, 114, 336, 779
MslI	CAYNNNNRTG	1 cut(s)	66
MspI	CCGG	2 cut(s)	229, 806
MspR9I	CCNGG	1 cut(s)	806
Mva1269I	GAATGC	1 cut(s)	52
MwoI	GCNNNNNNNGC	8 cut(s)	125, 317, 602, 605, 614, 761, 935, 938
NciI	CCSGG	1 cut(s)	806
NdeII	GATC	2 cut(s)	350, 502
NlaIII	CATG	4 cut(s)	79, 140, 238, 892
NlaIV	GGNNCC	1 cut(s)	738
NmeAIII	GCCGAG	2 cut(s)	655, 781
PagI	TCATGA	2 cut(s)	75, 888
PcsI	WCGNNNNNNNCGW	1 cut(s)	450
PctI	GAATGC	1 cut(s)	52
PkrI	GCNGC	5 cut(s)	100, 598, 607, 931, 940
Psp124BI	GAGCTC	1 cut(s)	619
PspN4I	GGNNCC	1 cut(s)	738
PspPI	GGNCC	1 cut(s)	927
PsuI	RGATCY	1 cut(s)	350
RsaI	GTAC	1 cut(s)	910
RsaNI	GTAC	1 cut(s)	909
RseI	CAYNNNNRTG	1 cut(s)	66
SacI	GAGCTC	1 cut(s)	619
SaqAI	TTAA	4 cut(s)	23, 114, 336, 779
SatI	GCNGC	5 cut(s)	99, 597, 606, 930, 939
Sau3AI	GATC	2 cut(s)	350, 502
Sau96I	GGNCC	1 cut(s)	927
ScaI	AGTACT	1 cut(s)	910
ScrFI	CCNGG	1 cut(s)	806
SduI	GDGCHC	1 cut(s)	619
SfaNI	GCATC	1 cut(s)	583
SfcI	CTRYAG	1 cut(s)	297
SmiMI	CAYNNNNRTG	1 cut(s)	66
Sse9I	AATT	5 cut(s)	152, 207, 498, 648, 780
SsiI	CCGC	2 cut(s)	379, 930
SspI	AATATT	1 cut(s)	462
SstI	GAGCTC	1 cut(s)	619
StyD4I	CCNGG	1 cut(s)	804
StyI	CCWWGG	1 cut(s)	561
TaaI	ACNGT	1 cut(s)	836
TaiI	ACGT	2 cut(s)	253, 447
TaqI	TCGA	4 cut(s)	147, 222, 853, 905
TasI	AATT	5 cut(s)	152, 207, 498, 648, 780
TatI	WGTACW	1 cut(s)	908
TauI	GCSGC	1 cut(s)	932
Tru1I	TTAA	4 cut(s)	23, 114, 336, 779
Tru9I	TTAA	4 cut(s)	23, 114, 336, 779
TseI	GCWGC	4 cut(s)	98, 596, 605, 938
TspDTI	ATGAA	3 cut(s)	153, 539, 905
XagI	CCTNNNNNAGG	1 cut(s)	565
XapI	RAATTY	2 cut(s)	152, 207
ZrmI	AGTACT	1 cut(s)	910

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.