Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0008759

Physical Location & Seq

Genomic Coordinates Reverse (-)

27903268 .. 27989680

Gene Structure 86413 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG231700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1189 bp

ATGAGGACGTGGAGAGCAAGTAACGAAAAAGCAATCCTCGGGCTTCAAGGAGATTCAATATTAATCATCAGGTGGTCATCATGGTACCGGACATTTGATGATCCAAAGTTAAAAGCCAAAATTGAGCAGGCTAATGTAGAAGTTCAGAAGAAGAATCAGGCTCGATCTCGAGTCCTTGAAGCATTAAATGCAAAGAGGTCCGAGAGATCTGAGTTAATAGAGCAGATTAAGGCTCTGAGATCTGACAACCAGCAAATTAGAAAAATTGCGGATGAGAAATTTAAGGAGATTGAGCCTCTGCAGAAGGATCTCAAAAAGCTCCGCACTGCAGATTATGCTGGTCGCAATGGTGGTTTGTGCTCATCTGAGGAAGAGCTTGATGCTCGGATCAAAGGCTTGCAGTATATCATACAACATGAGAGCATTCCGTTGTCTGAGGAGAAGAAAATCCTTAAAGAGATCAAACAACTTGAAAACACACGTGGAGAAGTCATTGCTAATGCTGCTGTACGAGCCAAGATTCAGGAATCAGTGGTTCATATGGACAAAGAGGCCCTTCAAGACCTGGTTAAACTTATAGGTGGTGATTTGGATGGAGGAAGGAAAGAGCAACAAGCAGTTCGGTCCAAAATTCAGCAACTTGATGATGGAATTAAGGCCGTAGATAAGCAAATTTCATCAATATGGGATGAGCTGAAGATTGTAACTGATAAGAGGGATCAAGCACAACAGAGCAGTTTTACATTTAGGCAGCAGCTTGATCAGCAAAACGCCTCCTTTTACCTAAGCCGTAATATCTTGAACAAAGCAAGAGGTTTGGCTATCAAGAATGATGTTAAAGCACTTGAAGAGCTTACTCATGCAGATTGGAATAGTAAAAAGGATTTTAGGGATGAATATGAGAAAAGAATTTTGTTGTCTCTGGATGGTCGGCAATTGAGTAGGGATGGACGAATAAGAAACCCAGATGAAAAGCCATTGGTGGTTCATGAAGTGTCCACACCCATAGTAGTAGAGTCGGCAACAAAAGCTAATACAAAACAAGTCAAGGAAGATGGCAGATCTGCTCCATTAGATAGTTTGCCTGTGCAGAAGGTTCAGAAAGAAGCCAAAAGTAAAGCAGTGCCTCCAAAATCTACTGTAGACGAAGACAAGGAGATATATGGGCTTGAGAAGCCGAAACAGGACA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0005911 GO:0008150 GO:0009506 GO:0010155 GO:0012505 GO:0016020 GO:0030054 GO:0031984 GO:0032879 GO:0034762 GO:0034765 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043269 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0051049 GO:0055044 GO:0065007 GO:0071944 GO:0097159 GO:0098827 GO:1901363 GO:1904062

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

396

Amino Acids

45.21

Weight (kDa)

9.15

Isoelectric Point (pI)

51.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF7121	PF23435	42 - 269	9.4e-06	Family of unknown function (DUF7121)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008759)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27500 AT4G27500
fragaria_vesca	FvH4_3g19880 FvH4_3g19880 FvH4_3g19880 FvH4_3g19880
malus_domestica	MD03G1228300.v1.1 MD11G1247800.v1.1
prunus_persica	Prupe.4G180600_v2.0.a1
pyrus_communis	pycom03g17570 pycom11g22030
rosa_chinensis	RchiOBHm_Chr5g0033561
rosa_laevigata	RLG00000033478 RLG00000033484
rosa_multiflora	Rmu_sc0003286.1_g000004
rosa_roxburghii	Rroxscaffold_1G00046510
rosa_rugosa	Rorug05G0139600 Rorug05G0140000
rosa_samantha	Rh5AG231700 Rh5BG232500 Rh5CG261200 Rh5DG238000
rosa_wichuraiana	Rw5G021140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	84
AccB1I	GGYRCC	1 cut(s)	84
AccI	GTMKAC	1 cut(s)	1143
AciI	CCGC	2 cut(s)	269, 322
AclWI	GGATC	4 cut(s)	95, 315, 395, 726
AcsI	RAATTY	4 cut(s)	278, 630, 672, 909
AcuI	CTGAAG	1 cut(s)	716
AcvI	CACGTG	1 cut(s)	482
AfaI	GTAC	2 cut(s)	86, 510
AflIII	ACRYGT	1 cut(s)	479
AgsI	TTSAA	7 cut(s)	47, 57, 179, 473, 560, 802, 848
AjiI	CACGTC	1 cut(s)	9
AjnI	CCWGG	1 cut(s)	564
AluBI	AGCT	6 cut(s)	319, 376, 694, 757, 853, 1031
AluI	AGCT	6 cut(s)	319, 376, 694, 757, 853, 1031
Alw21I	GWGCWC	1 cut(s)	362
Alw26I	GTCTC	1 cut(s)	924
AlwI	GGATC	4 cut(s)	95, 315, 395, 726
Ama87I	CYCGRG	2 cut(s)	38, 168
AoxI	GGCC	2 cut(s)	552, 657
ApeKI	GCWGC	3 cut(s)	503, 751, 754
ApoI	RAATTY	4 cut(s)	278, 630, 672, 909
AseI	ATTAAT	1 cut(s)	62
Asp718I	GGTACC	1 cut(s)	84
AspS9I	GGNCC	3 cut(s)	198, 553, 624
AsuHPI	GGTGA	1 cut(s)	596
AvaI	CYCGRG	2 cut(s)	38, 168
AvaII	GGWCC	2 cut(s)	198, 624
BanI	GGYRCC	1 cut(s)	84
BbrPI	CACGTG	1 cut(s)	482
BbsI	GAAGAC	1 cut(s)	1155
Bbv12I	GWGCWC	1 cut(s)	362
BbvI	GCAGC	3 cut(s)	490, 763, 766
BccI	CCATC	5 cut(s)	587, 641, 920, 941, 1049
BceAI	ACGGC	2 cut(s)	644, 774
BciT130I	CCWGG	1 cut(s)	566
BclI	TGATCA	1 cut(s)	760
BcoDI	GTCTC	1 cut(s)	924
BfmI	CTRYAG	3 cut(s)	299, 327, 1140
BglII	AGATCT	3 cut(s)	206, 239, 1061
BisI	GCNGC	3 cut(s)	504, 752, 755
BlsI	GCNGC	3 cut(s)	505, 753, 756
Bme1390I	CCNGG	1 cut(s)	566
Bme18I	GGWCC	2 cut(s)	198, 624
BmeT110I	CYCGRG	2 cut(s)	38, 168
BmgBI	CACGTC	1 cut(s)	9
BmgT120I	GGNCC	3 cut(s)	198, 553, 624
BmiI	GGNNCC	1 cut(s)	86
BmrFI	CCNGG	1 cut(s)	566
BmsI	GCATC	1 cut(s)	370
BpiI	GAAGAC	1 cut(s)	1155
Bpu10I	CCTNAGC	1 cut(s)	785
BsaAI	YACGTR	1 cut(s)	482
BsaJI	CCNNGG	1 cut(s)	37
BsaWI	WCCGGW	1 cut(s)	87
BsaXI	ACNNNNNCTCC	1 cut(s)	34
Bse3DI	GCAATG	2 cut(s)	352, 492
BseBI	CCWGG	1 cut(s)	566
BseDI	CCNNGG	1 cut(s)	37
BseGI	GGATG	6 cut(s)	277, 598, 694, 898, 931, 952
BseMI	GCAATG	2 cut(s)	352, 492
BseMII	CTCAG	4 cut(s)	201, 227, 357, 426
BseRI	GAGGAG	1 cut(s)	452
BseXI	GCAGC	3 cut(s)	490, 763, 766
BsgI	GTGCAG	1 cut(s)	1109
BshFI	GGCC	2 cut(s)	554, 659
BshNI	GGYRCC	1 cut(s)	84
BsiHKAI	GWGCWC	1 cut(s)	362
BsiHKCI	CYCGRG	2 cut(s)	38, 168
BsiSI	CCGG	1 cut(s)	88
BsmAI	GTCTC	1 cut(s)	924
BsmI	GAATGC	1 cut(s)	423
BsnI	GGCC	2 cut(s)	554, 659
BsoBI	CYCGRG	2 cut(s)	38, 168
Bsp1286I	GDGCHC	1 cut(s)	362
BspACI	CCGC	2 cut(s)	269, 322
BspANI	GGCC	2 cut(s)	554, 659
BspCNI	CTCAG	4 cut(s)	202, 228, 358, 427
BspHI	TCATGA	1 cut(s)	988
BspLI	GGNNCC	1 cut(s)	86
BspMAI	CTGCAG	2 cut(s)	303, 331
BspPI	GGATC	4 cut(s)	95, 315, 395, 726
BspQI	GCTCTTC	2 cut(s)	366, 843
BspT107I	GGYRCC	1 cut(s)	84
BsrDI	GCAATG	2 cut(s)	352, 492
BssECI	CCNNGG	1 cut(s)	37
Bst2UI	CCWGG	1 cut(s)	566
Bst4CI	ACNGT	1 cut(s)	1141
Bst6I	CTCTTC	2 cut(s)	366, 843
BstAPI	GCANNNNNTGC	2 cut(s)	188, 335
BstBAI	YACGTR	1 cut(s)	482
BstC8I	GCNNGC	2 cut(s)	129, 398
BstDEI	CTNAG	5 cut(s)	210, 236, 366, 435, 785
BstF5I	GGATG	6 cut(s)	277, 598, 694, 898, 931, 952
BstMAI	GTCTC	1 cut(s)	924
BstMWI	GCNNNNNNNGC	7 cut(s)	188, 335, 503, 512, 763, 1028, 1174
BstNI	CCWGG	1 cut(s)	566
BstSCI	CCNGG	1 cut(s)	564
BstSFI	CTRYAG	3 cut(s)	299, 327, 1140
BstV1I	GCAGC	3 cut(s)	490, 763, 766
BstV2I	GAAGAC	1 cut(s)	1155
BstX2I	RGATCY	4 cut(s)	206, 239, 307, 1061
BstYI	RGATCY	4 cut(s)	206, 239, 307, 1061
BsuRI	GGCC	2 cut(s)	554, 659
BtrI	CACGTC	1 cut(s)	9
BtsCI	GGATG	6 cut(s)	277, 598, 694, 898, 931, 952
BtsI	GCAGTG	2 cut(s)	324, 1128
BtsIMutI	CAGTG	3 cut(s)	324, 537, 1128
Cac8I	GCNNGC	2 cut(s)	129, 398
CciI	TCATGA	1 cut(s)	988
Cfr13I	GGNCC	3 cut(s)	198, 553, 624
CsiI	ACCWGGT	1 cut(s)	564
Csp6I	GTAC	2 cut(s)	85, 509
CviAII	CATG	4 cut(s)	81, 416, 860, 989
CviQI	GTAC	2 cut(s)	85, 509
DdeI	CTNAG	5 cut(s)	210, 236, 366, 435, 785
Eam1104I	CTCTTC	2 cut(s)	366, 843
EarI	CTCTTC	2 cut(s)	366, 843
Eco47I	GGWCC	2 cut(s)	198, 624
Eco57I	CTGAAG	1 cut(s)	716
Eco72I	CACGTG	1 cut(s)	482
Eco88I	CYCGRG	2 cut(s)	38, 168
EcoO109I	RGGNCCY	1 cut(s)	553
EcoRII	CCWGG	1 cut(s)	564
FaeI	CATG	4 cut(s)	84, 419, 863, 992
FalI	AAGNNNNNCTT	2 cut(s)	540, 572
FatI	CATG	4 cut(s)	80, 415, 859, 988
FauNDI	CATATG	1 cut(s)	540
FbaI	TGATCA	1 cut(s)	760
FblI	GTMKAC	1 cut(s)	1143
Fnu4HI	GCNGC	3 cut(s)	504, 752, 755
FokI	GGATG	6 cut(s)	284, 605, 701, 905, 938, 959
Fsp4HI	GCNGC	3 cut(s)	504, 752, 755
GluI	GCNGC	3 cut(s)	504, 752, 755
HaeIII	GGCC	2 cut(s)	554, 659
HapII	CCGG	1 cut(s)	88
Hin1II	CATG	4 cut(s)	84, 419, 863, 992
HinfI	GANTC	6 cut(s)	53, 154, 171, 520, 527, 1016
HpaII	CCGG	1 cut(s)	88
HphI	GGTGA	1 cut(s)	596
Hpy166II	GTNNAC	2 cut(s)	999, 1144
Hpy188I	TCNGA	9 cut(s)	147, 202, 211, 237, 244, 367, 387, 436, 1101
Hpy188III	TCNNGA	7 cut(s)	168, 524, 560, 799, 826, 923, 989
Hpy8I	GTNNAC	2 cut(s)	999, 1144
HpyAV	CCTTC	4 cut(s)	298, 566, 594, 1087
HpyCH4III	ACNGT	1 cut(s)	1141
HpyCH4IV	ACGT	2 cut(s)	8, 481
HpyCH4V	TGCA	6 cut(s)	191, 301, 329, 400, 863, 1090
HpyF10VI	GCNNNNNNNGC	7 cut(s)	188, 335, 503, 512, 763, 1028, 1174
HpyF3I	CTNAG	5 cut(s)	210, 236, 366, 435, 785
HpySE526I	ACGT	2 cut(s)	8, 481
Hsp92II	CATG	4 cut(s)	84, 419, 863, 992
KpnI	GGTACC	1 cut(s)	88
Ksp22I	TGATCA	1 cut(s)	760
LguI	GCTCTTC	2 cut(s)	366, 843
LmnI	GCTCC	2 cut(s)	324, 1072
Lsp1109I	GCAGC	3 cut(s)	490, 763, 766
LweI	GCATC	1 cut(s)	370
MabI	ACCWGGT	1 cut(s)	564
MaeII	ACGT	2 cut(s)	8, 481
MaeIII	GTNAC	2 cut(s)	20, 703
MboII	GAAGA	8 cut(s)	160, 163, 383, 454, 709, 860, 1064, 1160
MfeI	CAATTG	1 cut(s)	935
MflI	RGATCY	4 cut(s)	206, 239, 307, 1061
MhlI	GDGCHC	1 cut(s)	362
MluCI	AATT	9 cut(s)	120, 255, 264, 278, 630, 651, 672, 909, 935
MlyI	GAGTC	2 cut(s)	180, 1025
MslI	CAYNNNNRTG	1 cut(s)	682
MspI	CCGG	1 cut(s)	88
MspR9I	CCNGG	1 cut(s)	566
MunI	CAATTG	1 cut(s)	935
Mva1269I	GAATGC	1 cut(s)	423
MvaI	CCWGG	1 cut(s)	566
MwoI	GCNNNNNNNGC	7 cut(s)	188, 335, 503, 512, 763, 1028, 1174
NdeI	CATATG	1 cut(s)	540
NlaIII	CATG	4 cut(s)	84, 419, 863, 992
NlaIV	GGNNCC	1 cut(s)	86
PaeR7I	CTCGAG	1 cut(s)	168
PagI	TCATGA	1 cut(s)	988
PciSI	GCTCTTC	2 cut(s)	366, 843
PctI	GAATGC	1 cut(s)	423
PfeI	GAWTC	4 cut(s)	53, 154, 520, 527
PkrI	GCNGC	3 cut(s)	505, 753, 756
PleI	GAGTC	2 cut(s)	179, 1024
PmaCI	CACGTG	1 cut(s)	482
PmlI	CACGTG	1 cut(s)	482
PpsI	GAGTC	2 cut(s)	179, 1024
Ppu21I	YACGTR	1 cut(s)	482
PshBI	ATTAAT	1 cut(s)	62
Psp6I	CCWGG	1 cut(s)	564
PspCI	CACGTG	1 cut(s)	482
PspGI	CCWGG	1 cut(s)	564
PspN4I	GGNNCC	1 cut(s)	86
PspPI	GGNCC	3 cut(s)	198, 553, 624
PstI	CTGCAG	2 cut(s)	303, 331
PsuI	RGATCY	4 cut(s)	206, 239, 307, 1061
RsaI	GTAC	2 cut(s)	86, 510
RsaNI	GTAC	2 cut(s)	85, 509
RseI	CAYNNNNRTG	1 cut(s)	682
SapI	GCTCTTC	2 cut(s)	366, 843
SatI	GCNGC	3 cut(s)	504, 752, 755
Sau96I	GGNCC	3 cut(s)	198, 553, 624
SchI	GAGTC	2 cut(s)	180, 1025
ScrFI	CCNGG	1 cut(s)	566
SduI	GDGCHC	1 cut(s)	362
SexAI	ACCWGGT	1 cut(s)	564
SfaNI	GCATC	1 cut(s)	370
SfcI	CTRYAG	3 cut(s)	299, 327, 1140
Sfr274I	CTCGAG	1 cut(s)	168
SinI	GGWCC	2 cut(s)	198, 624
SlaI	CTCGAG	1 cut(s)	168
SmiMI	CAYNNNNRTG	1 cut(s)	682
SmlI	CTYRAG	2 cut(s)	168, 1169
SmoI	CTYRAG	2 cut(s)	168, 1169
Sse9I	AATT	9 cut(s)	120, 255, 264, 278, 630, 651, 672, 909, 935
SsiI	CCGC	2 cut(s)	269, 322
SspI	AATATT	1 cut(s)	60
StyD4I	CCNGG	1 cut(s)	564
TaaI	ACNGT	1 cut(s)	1141
TaiI	ACGT	2 cut(s)	11, 484
TaqI	TCGA	2 cut(s)	163, 169
TaqII	GACCGA	1 cut(s)	612
TasI	AATT	9 cut(s)	120, 255, 264, 278, 630, 651, 672, 909, 935
TfiI	GAWTC	4 cut(s)	53, 154, 520, 527
TscAI	CASTG	3 cut(s)	331, 537, 1128
TseI	GCWGC	3 cut(s)	503, 751, 754
TspDTI	ATGAA	6 cut(s)	527, 666, 909, 977, 984, 1005
TspGWI	ACGGA	1 cut(s)	417
TspRI	CASTG	3 cut(s)	331, 537, 1128
VpaK11BI	GGWCC	2 cut(s)	198, 624
VspI	ATTAAT	1 cut(s)	62
XapI	RAATTY	4 cut(s)	278, 630, 672, 909
XhoI	CTCGAG	1 cut(s)	168
XmiI	GTMKAC	1 cut(s)	1143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.