Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0008759

Physical Location & Seq

Genomic Coordinates Forward (+)

12747307 .. 12748660

Gene Structure 1354 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0140000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGGGATTTAGAGCTGGATTCAGGTCAACACTTGGCCTAGATGGGTGCCACTTGAAGAGTTGCTATGGAGGTCAGCTACTTACAGCTGTGGATCCTGATAGGCCTGCCAAGCACTGGTCTAGGGCACATTTTGGAACACATCTGAAGTGTGACATCCTCTTGAATAATTTGTTCGCGAGTTTCAATGCATTCATTGTACCGGCTAGAAAGAAGCCAATTGTGAGCTGTTTTGAAGAAATAAGAGTTAAGCTGATGAGGAGAATCCAAGTTATGAGGAATAAGATGCTGAAACATGAAGATACAATCTGCCCCAAACCTAGGGAGATATTGGAGAAAAATAAGGTCAAGGCTACAACTAATTGCATACCTAGTGGATCAGGTAGGCCACAAATTGAAGTTGCAAGCATAGGAGGCAGTAAGTATGTGGTGAACCTTGAAGCCCACACTTGTGCATACAGAAAATGGGATTTAACTGGCATCCCATGTAAACATGCTGTTTTAGCAATACATTACATGAGACATGCCCCTGAAGAGTATGTGGATCAGTGCTACTTGAAGAAGACATACATGGCTATTTATGCCAACACAATCAAACCTGTAAATGGTATGAATTTGTGGTCTAAGAGTGCTGAACCCCCAATCCTTCCCCCACAATACACAAGGCAACTAGAGAGACCAAAGATAAAGAGGATGAAGGATGCAGCTGAGAAGGAGGCAGCCAATGGTGGAATCAAGCTTGGCAGAGTTCAAAGGTCTCTTAAGTGCAGCAACTGTCAACAAGTTGGTCACAATGTAAAGACCTGTCATAGACACTTGCCACCCAAGGATAAGACCTCAACAAGCAGTAGCAAGAAGAGAAAGTTGGATGCATCCAAAACTGAAACTCAGGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0005911 GO:0008150 GO:0009506 GO:0010155 GO:0012505 GO:0016020 GO:0030054 GO:0031984 GO:0032879 GO:0034762 GO:0034765 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043269 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0051049 GO:0055044 GO:0065007 GO:0071944 GO:0097159 GO:0098827 GO:1901363 GO:1904062

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

297

Amino Acids

33.54

Weight (kDa)

9.83

Isoelectric Point (pI)

42.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008759)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27500 AT4G27500
fragaria_vesca	FvH4_3g19880 FvH4_3g19880 FvH4_3g19880 FvH4_3g19880
malus_domestica	MD03G1228300.v1.1 MD11G1247800.v1.1
prunus_persica	Prupe.4G180600_v2.0.a1
pyrus_communis	pycom03g17570 pycom11g22030
rosa_chinensis	RchiOBHm_Chr5g0033561
rosa_laevigata	RLG00000033478 RLG00000033484
rosa_multiflora	Rmu_sc0003286.1_g000004
rosa_roxburghii	Rroxscaffold_1G00046510
rosa_rugosa	Rorug05G0139600 Rorug05G0140000
rosa_samantha	Rh5AG231700 Rh5BG232500 Rh5CG261200 Rh5DG238000
rosa_wichuraiana	Rw5G021140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	45
AccB7I	CCANNNNNTGG	1 cut(s)	114
AccII	CGCG	1 cut(s)	176
AclWI	GGATC	4 cut(s)	86, 99, 382, 549
AcsI	RAATTY	1 cut(s)	610
AcuI	CTGAAG	2 cut(s)	164, 549
AfaI	GTAC	1 cut(s)	198
AfiI	CCNNNNNNNGG	3 cut(s)	114, 318, 602
AflII	CTTAAG	1 cut(s)	758
AgsI	TTSAA	8 cut(s)	55, 163, 184, 233, 395, 437, 556, 749
AjuI	GAANNNNNNNTTGG	2 cut(s)	845, 877
AleI	CACNNNNGTG	1 cut(s)	447
AloI	GAACNNNNNNTCC	2 cut(s)	624, 656
AluBI	AGCT	7 cut(s)	14, 76, 86, 225, 250, 704, 736
AluI	AGCT	7 cut(s)	14, 76, 86, 225, 250, 704, 736
Alw26I	GTCTC	3 cut(s)	511, 667, 759
AlwI	GGATC	4 cut(s)	86, 99, 382, 549
AlwNI	CAGNNNCTG	1 cut(s)	771
AoxI	GGCC	3 cut(s)	34, 101, 383
ApeKI	GCWGC	3 cut(s)	701, 716, 765
ApoI	RAATTY	1 cut(s)	610
AspA2I	CCTAGG	1 cut(s)	317
AsuHPI	GGTGA	1 cut(s)	439
AvrII	CCTAGG	1 cut(s)	317
BaeGI	GKGCMC	1 cut(s)	127
BamHI	GGATCC	1 cut(s)	91
BanI	GGYRCC	1 cut(s)	45
BarI	GAAGNNNNNNTAC	2 cut(s)	548, 580
BbsI	GAAGAC	1 cut(s)	566
BbvI	GCAGC	3 cut(s)	713, 728, 777
BccI	CCATC	1 cut(s)	35
BcoDI	GTCTC	3 cut(s)	511, 667, 759
BfaI	CTAG	6 cut(s)	38, 120, 204, 318, 369, 668
BfrI	CTTAAG	1 cut(s)	758
BisI	GCNGC	3 cut(s)	702, 717, 766
BlnI	CCTAGG	1 cut(s)	317
BlsI	GCNGC	3 cut(s)	703, 718, 767
BmiI	GGNNCC	2 cut(s)	47, 93
BmsI	GCATC	5 cut(s)	273, 486, 688, 856, 878
BpiI	GAAGAC	1 cut(s)	566
BsaI	GGTCTC	2 cut(s)	667, 759
BsaJI	CCNNGG	2 cut(s)	317, 822
Bsc4I	CCNNNNNNNGG	3 cut(s)	114, 318, 602
Bse118I	RCCGGY	1 cut(s)	199
Bse1I	ACTGG	2 cut(s)	119, 478
BseDI	CCNNGG	2 cut(s)	317, 822
BseGI	GGATG	6 cut(s)	153, 477, 696, 703, 869, 871
BseLI	CCNNNNNNNGG	3 cut(s)	114, 318, 602
BseMII	CTCAG	1 cut(s)	696
BseNI	ACTGG	2 cut(s)	119, 478
BseRI	GAGGAG	1 cut(s)	271
BseSI	GKGCMC	1 cut(s)	127
BseXI	GCAGC	3 cut(s)	713, 728, 777
BsgI	GTGCAG	1 cut(s)	784
Bsh1236I	CGCG	1 cut(s)	176
BshFI	GGCC	3 cut(s)	36, 103, 385
BshNI	GGYRCC	1 cut(s)	45
BsiSI	CCGG	1 cut(s)	200
BslI	CCNNNNNNNGG	3 cut(s)	114, 318, 602
BsmAI	GTCTC	3 cut(s)	511, 667, 759
BsmI	GAATGC	1 cut(s)	188
BsnI	GGCC	3 cut(s)	36, 103, 385
Bso31I	GGTCTC	2 cut(s)	667, 759
Bsp1286I	GDGCHC	1 cut(s)	127
Bsp143I	GATC	3 cut(s)	91, 374, 541
Bsp68I	TCGCGA	1 cut(s)	176
BspANI	GGCC	3 cut(s)	36, 103, 385
BspCNI	CTCAG	1 cut(s)	697
BspFNI	CGCG	1 cut(s)	176
BspLI	GGNNCC	2 cut(s)	47, 93
BspPI	GGATC	4 cut(s)	86, 99, 382, 549
BspT107I	GGYRCC	1 cut(s)	45
BspTI	CTTAAG	1 cut(s)	758
BspTNI	GGTCTC	2 cut(s)	667, 759
BsrFI	RCCGGY	1 cut(s)	199
BsrI	ACTGG	2 cut(s)	119, 478
BssAI	RCCGGY	1 cut(s)	199
BssECI	CCNNGG	2 cut(s)	317, 822
BssMI	GATC	3 cut(s)	91, 374, 541
BssT1I	CCWWGG	2 cut(s)	317, 822
Bst4CI	ACNGT	1 cut(s)	773
Bst6I	CTCTTC	3 cut(s)	50, 525, 848
BstAFI	CTTAAG	1 cut(s)	758
BstC8I	GCNNGC	2 cut(s)	105, 403
BstDEI	CTNAG	3 cut(s)	621, 705, 885
BstF5I	GGATG	6 cut(s)	153, 477, 696, 703, 869, 871
BstFNI	CGCG	1 cut(s)	176
BstKTI	GATC	3 cut(s)	94, 377, 544
BstMAI	GTCTC	3 cut(s)	511, 667, 759
BstMBI	GATC	3 cut(s)	91, 374, 541
BstMWI	GCNNNNNNNGC	4 cut(s)	109, 411, 500, 578
BstNSI	RCATGY	2 cut(s)	494, 524
BstSLI	GKGCMC	1 cut(s)	127
BstUI	CGCG	1 cut(s)	176
BstV1I	GCAGC	3 cut(s)	713, 728, 777
BstV2I	GAAGAC	1 cut(s)	566
BstX2I	RGATCY	1 cut(s)	91
BstYI	RGATCY	1 cut(s)	91
BsuRI	GGCC	3 cut(s)	36, 103, 385
BtsCI	GGATG	6 cut(s)	153, 477, 696, 703, 869, 871
BtsIMutI	CAGTG	2 cut(s)	112, 551
BtuMI	TCGCGA	1 cut(s)	176
Cac8I	GCNNGC	2 cut(s)	105, 403
CaiI	CAGNNNCTG	1 cut(s)	771
Cfr10I	RCCGGY	1 cut(s)	199
Csp6I	GTAC	1 cut(s)	197
CviAII	CATG	6 cut(s)	293, 483, 491, 514, 521, 568
CviQI	GTAC	1 cut(s)	197
DdeI	CTNAG	3 cut(s)	621, 705, 885
DpnI	GATC	3 cut(s)	93, 376, 543
DpnII	GATC	3 cut(s)	91, 374, 541
Eam1104I	CTCTTC	3 cut(s)	50, 525, 848
EarI	CTCTTC	3 cut(s)	50, 525, 848
Eco130I	CCWWGG	2 cut(s)	317, 822
Eco147I	AGGCCT	1 cut(s)	103
Eco31I	GGTCTC	2 cut(s)	667, 759
Eco57I	CTGAAG	2 cut(s)	164, 549
EcoT14I	CCWWGG	2 cut(s)	317, 822
EcoT22I	ATGCAT	2 cut(s)	190, 871
ErhI	CCWWGG	2 cut(s)	317, 822
FaeI	CATG	6 cut(s)	296, 486, 494, 517, 524, 571
FatI	CATG	6 cut(s)	292, 482, 490, 513, 520, 567
Fnu4HI	GCNGC	3 cut(s)	702, 717, 766
FokI	GGATG	6 cut(s)	140, 464, 703, 710, 856, 878
Fsp4HI	GCNGC	3 cut(s)	702, 717, 766
FspBI	CTAG	6 cut(s)	38, 120, 204, 318, 369, 668
GluI	GCNGC	3 cut(s)	702, 717, 766
HaeIII	GGCC	3 cut(s)	36, 103, 385
HapII	CCGG	1 cut(s)	200
Hin1II	CATG	6 cut(s)	296, 486, 494, 517, 524, 571
HincII	GTYRAC	2 cut(s)	27, 776
HindII	GTYRAC	2 cut(s)	27, 776
HindIII	AAGCTT	1 cut(s)	734
HinfI	GANTC	3 cut(s)	18, 261, 729
HpaII	CCGG	1 cut(s)	200
HphI	GGTGA	1 cut(s)	439
Hpy166II	GTNNAC	4 cut(s)	27, 430, 488, 776
Hpy188I	TCNGA	1 cut(s)	144
Hpy188III	TCNNGA	3 cut(s)	95, 160, 175
Hpy8I	GTNNAC	4 cut(s)	27, 430, 488, 776
HpyAV	CCTTC	3 cut(s)	653, 688, 703
HpyCH4III	ACNGT	1 cut(s)	773
HpyCH4V	TGCA	7 cut(s)	188, 363, 401, 452, 701, 765, 869
HpyF10VI	GCNNNNNNNGC	4 cut(s)	109, 411, 500, 578
HpyF3I	CTNAG	3 cut(s)	621, 705, 885
Hsp92II	CATG	6 cut(s)	296, 486, 494, 517, 524, 571
Kzo9I	GATC	3 cut(s)	91, 374, 541
Lsp1109I	GCAGC	3 cut(s)	713, 728, 777
LweI	GCATC	5 cut(s)	273, 486, 688, 856, 878
MaeI	CTAG	6 cut(s)	38, 120, 204, 318, 369, 668
MaeIII	GTNAC	2 cut(s)	149, 785
MalI	GATC	3 cut(s)	93, 376, 543
MboI	GATC	3 cut(s)	91, 374, 541
MboII	GAAGA	7 cut(s)	67, 245, 308, 542, 568, 571, 865
MfeI	CAATTG	1 cut(s)	216
MflI	RGATCY	1 cut(s)	91
MhlI	GDGCHC	1 cut(s)	127
MluCI	AATT	5 cut(s)	166, 216, 358, 390, 610
MmeI	TCCRAC	1 cut(s)	843
MnlI	CCTC	8 cut(s)	62, 167, 249, 267, 404, 681, 706, 844
Mph1103I	ATGCAT	2 cut(s)	190, 871
MseI	TTAA	3 cut(s)	246, 470, 759
MslI	CAYNNNNRTG	1 cut(s)	447
MspA1I	CMGCKG	2 cut(s)	86, 704
MspCI	CTTAAG	1 cut(s)	758
MspI	CCGG	1 cut(s)	200
MunI	CAATTG	1 cut(s)	216
Mva1269I	GAATGC	1 cut(s)	188
MvnI	CGCG	1 cut(s)	176
MwoI	GCNNNNNNNGC	4 cut(s)	109, 411, 500, 578
NdeII	GATC	3 cut(s)	91, 374, 541
NlaIII	CATG	6 cut(s)	296, 486, 494, 517, 524, 571
NlaIV	GGNNCC	2 cut(s)	47, 93
NmuCI	GTSAC	2 cut(s)	149, 785
NruI	TCGCGA	1 cut(s)	176
NsiI	ATGCAT	2 cut(s)	190, 871
NspI	RCATGY	2 cut(s)	494, 524
OliI	CACNNNNGTG	1 cut(s)	447
PceI	AGGCCT	1 cut(s)	103
PctI	GAATGC	1 cut(s)	188
PfeI	GAWTC	3 cut(s)	18, 261, 729
PflMI	CCANNNNNTGG	1 cut(s)	114
PkrI	GCNGC	3 cut(s)	703, 718, 767
PspN4I	GGNNCC	2 cut(s)	47, 93
PstNI	CAGNNNCTG	1 cut(s)	771
PsuI	RGATCY	1 cut(s)	91
PvuII	CAGCTG	2 cut(s)	86, 704
RruI	TCGCGA	1 cut(s)	176
RsaI	GTAC	1 cut(s)	198
RsaNI	GTAC	1 cut(s)	197
RseI	CAYNNNNRTG	1 cut(s)	447
SaqAI	TTAA	3 cut(s)	246, 470, 759
SatI	GCNGC	3 cut(s)	702, 717, 766
Sau3AI	GATC	3 cut(s)	91, 374, 541
SduI	GDGCHC	1 cut(s)	127
SfaNI	GCATC	5 cut(s)	273, 486, 688, 856, 878
SmiMI	CAYNNNNRTG	1 cut(s)	447
SmlI	CTYRAG	1 cut(s)	758
SmoI	CTYRAG	1 cut(s)	758
Sse9I	AATT	5 cut(s)	166, 216, 358, 390, 610
SseBI	AGGCCT	1 cut(s)	103
SspMI	CTAG	6 cut(s)	38, 120, 204, 318, 369, 668
StuI	AGGCCT	1 cut(s)	103
StyI	CCWWGG	2 cut(s)	317, 822
TaaI	ACNGT	1 cut(s)	773
TasI	AATT	5 cut(s)	166, 216, 358, 390, 610
TfiI	GAWTC	3 cut(s)	18, 261, 729
Tru1I	TTAA	3 cut(s)	246, 470, 759
Tru9I	TTAA	3 cut(s)	246, 470, 759
TscAI	CASTG	2 cut(s)	119, 551
TseFI	GTSAC	2 cut(s)	149, 785
TseI	GCWGC	3 cut(s)	701, 716, 765
Tsp45I	GTSAC	2 cut(s)	149, 785
TspDTI	ATGAA	4 cut(s)	181, 309, 623, 707
TspRI	CASTG	2 cut(s)	119, 551
Van91I	CCANNNNNTGG	1 cut(s)	114
Vha464I	CTTAAG	1 cut(s)	758
XapI	RAATTY	1 cut(s)	610
XceI	RCATGY	2 cut(s)	494, 524
XmaJI	CCTAGG	1 cut(s)	317
XspI	CTAG	6 cut(s)	38, 120, 204, 318, 369, 668
Zsp2I	ATGCAT	2 cut(s)	190, 871

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.