RchiOBHm_Chr5g0033561

Proton pump-interactor

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Reverse (-)
27404715 .. 27411240
6526 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ31263

Sequence Viewer

Length: 1845 bp
ATGGGGGTCGAAGATTTGGGATTTGAGAAGGTCCAAGGACCAGTTGGTGGGACTGTTAGTGAAGGAGAGAATTCCGCCAAGGAAAATGGGAAACTGGAAGAAGGGTCAGGGCATAATGAGCCAATAAAATTTGGATCACATGGTGATGAAATGGCTAAAAAGGAAGGGAATGGGGTTGCGGTACAAAACTTCCCTCAAGATGCAGTTGATGAGTGGCCTGCCCCTAAGCAGATCCATTCTTTTTATTTCGTCAGGTACCGGACATTTGATGATCCAAAGTTAAAAGCCAAAATTGAGCAGGCTAATGTAGAAGTTCAGAAGAAGAATCAGGCTCGATCTCGAGTCCTTGAAGCATTAAATGCAAAGAGGTCCGAGAGATCTGAGTTAATAGAGCAGATTAAGGCTCTGAGATCTGACAACCAGCAAATTAGAAAAATTGCGGATGAGAAATTTAAGGAGATTGAGCCTCTGCAGAAGGATCTCAAAAAGCTCCGCACTGCAGATTATGCTGGTCGCAATGGTGGTTTGTGCTCATCTGAGGAAGAGCTTGATGCTCGGATCAAAGGCTTGCAGTATATCATACAACATGAGAGCATTCCGTTGTCTGAGGAGAAGAAAATCCTTAAAGAGATCAAACAACTTGAAAACACACGTGGAGAAGTCATCGCTAATGCTGCTGTACGAGCCAAGATTCAGGAATCAGTGGTTCATATAGACAAAGATGCCCTTCAAGACCAGGTTAAACTTATTGGTGGTGATTTGGATGGAGTAAGGAAAGAGCAACAAGCAGTTAGGTCCAAAATTCAGCAACTTGATGATGCAATTAAGGCAGTAGATAAGCAAATTTCTTCAATACGGGATGAGCTGAAGATTGTAACTGATAAGAGGGATCAATCACAACAGAGCATTTTTACATTTAGGCAGCAGCTTGATCAGCAAAATGCCTCCTTTTACCTAAGCCGTAATATCTTGAACAAAGCGAGAGGTTTGGCTATGAAGAATGATGTTAAAGCACTTGAAGAGCTTACTCATGCAGAGGTGGAGAAATTTATGTCCCAGTGGAATAGTAAAAAGGATTTTAGGGATGATTATGAGAAAAGAATTTTGTCGTCTCTGGATAGTCGGCAATTGAGTAGGGATGGACGAATAAGAAACCCAGATGAGAAGCCATTGGTGGTTCATGAAGTGTCCACACCCATAGTATTAGAGTCGGCAACAAAAGCTAATACAAAACAAGTCAAGGAAGATGGCAGATCTGCACCATTAGATAGTTTGCCTGTACAGAAGGTTCAGAAAGAAGCCAAAAGTAAAGCAGTGCTTCCAAAATCTACTGTAGATGAAGACGAGGAGATATATGGGCTTGAGAAGCCGAAAAAGGACAGTAAAGAGAGTAAAGTTGATGAAGCAAAGTTGAAGGAGATGAAAAGAGAAGAGGAAATTGCTAAAGCTAAGCAGGCCATGGAAAGGAAGAAGAAAAAGGCAGAGAAAGCTGCAGCTAAAGCAGAAATTAGAGCTCAAAAAGAAGCTGAAAAGAAGCTCAAGGAGCGTGAAAAGAAGGCAAAGAAGAAGGCTACATCAGCAACCGAGAACAATCCTGATGAGGCAACGGAACCAATTGCTGAAGTTGCAGAACCAGAAATACCTAATGTTGAAGTTCCGGTCCCTGCTAAGGAGAAGGTGCAAAAGGATAAAACTATCAGGAATAGGGGTCGTCCAAGAGGTCCAGACTCACTTCCGAAAGCCATACTGAAGCGGAAGAAGAGTAATAATTATTGGGTATGGGCTGCTCCTGCAGCTTTGTTGGTTGTGGTGTTTCTAGCACTCGGTTACTACTATCTTCTCTGA

Protein Analysis

614

Amino Acids

69.45

Weight (kDa)

9.14

Isoelectric Point (pI)

46.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 255
AccB1I GGYRCC 1 cut(s) 255
AccB7I CCANNNNNTGG 1 cut(s) 47
AciI CCGC 5 cut(s) 75, 179, 440, 493, 1753
AclWI GGATC 6 cut(s) 142, 226, 266, 486, 566, 897
AcsI RAATTY 7 cut(s) 70, 128, 449, 801, 843, 1046, 1101
AcuI CTGAAG 3 cut(s) 887, 1641, 1769
AcvI CACGTG 1 cut(s) 653
AdeI CACNNNGTG 1 cut(s) 143
AfaI GTAC 4 cut(s) 183, 257, 681, 1281
AfiI CCNNNNNNNGG 3 cut(s) 47, 1464, 1669
AflIII ACRYGT 1 cut(s) 650
AgsI TTSAA 8 cut(s) 350, 644, 731, 852, 973, 1019, 1414, 1652
AjnI CCWGG 1 cut(s) 735
Alw21I GWGCWC 2 cut(s) 533, 1516
Alw26I GTCTC 1 cut(s) 1116
AlwI GGATC 6 cut(s) 142, 226, 266, 486, 566, 897
Ama87I CYCGRG 1 cut(s) 339
AoxI GGCC 2 cut(s) 215, 1455
ApeKI GCWGC 7 cut(s) 674, 922, 925, 1490, 1493, 1784, 1793
ApoI RAATTY 7 cut(s) 70, 128, 449, 801, 843, 1046, 1101
Asp718I GGTACC 1 cut(s) 255
AspS9I GGNCC 6 cut(s) 31, 38, 369, 795, 1660, 1721
AsuHPI GGTGA 2 cut(s) 155, 767
AvaI CYCGRG 1 cut(s) 339
AvaII GGWCC 6 cut(s) 31, 38, 369, 795, 1660, 1721
BanI GGYRCC 1 cut(s) 255
BanII GRGCYC 1 cut(s) 1516
BbrPI CACGTG 1 cut(s) 653
BbsI GAAGAC 1 cut(s) 1347
Bbv12I GWGCWC 2 cut(s) 533, 1516
BbvI GCAGC 7 cut(s) 661, 934, 937, 1477, 1505, 1771, 1805
BccI CCATC 3 cut(s) 758, 1133, 1241
BceAI ACGGC 1 cut(s) 945
BciT130I CCWGG 1 cut(s) 737
BclI TGATCA 1 cut(s) 931
BcoDI GTCTC 1 cut(s) 1116
BfaI CTAG 1 cut(s) 1817
BfmI CTRYAG 5 cut(s) 470, 498, 1332, 1491, 1791
BglII AGATCT 3 cut(s) 377, 410, 1253
BisI GCNGC 7 cut(s) 675, 923, 926, 1491, 1494, 1785, 1794
BlpI GCTNAGC 1 cut(s) 1449
BlsI GCNGC 7 cut(s) 676, 924, 927, 1492, 1495, 1786, 1795
Bme1390I CCNGG 1 cut(s) 737
Bme18I GGWCC 6 cut(s) 31, 38, 369, 795, 1660, 1721
BmeT110I CYCGRG 1 cut(s) 339
BmgT120I GGNCC 6 cut(s) 31, 38, 369, 795, 1660, 1721
BmiI GGNNCC 3 cut(s) 257, 1611, 1662
BmrFI CCNGG 1 cut(s) 737
BmrI ACTGGG 1 cut(s) 1051
BmsI GCATC 4 cut(s) 190, 541, 712, 808
BmuI ACTGGG 1 cut(s) 1051
BpiI GAAGAC 1 cut(s) 1347
Bpu10I CCTNAGC 3 cut(s) 225, 956, 1668
Bpu1102I GCTNAGC 1 cut(s) 1449
BpuEI CTTGAG 3 cut(s) 180, 1382, 1523
BsaAI YACGTR 1 cut(s) 653
BsaJI CCNNGG 3 cut(s) 34, 78, 1458
BsaWI WCCGGW 2 cut(s) 258, 1657
Bsc4I CCNNNNNNNGG 3 cut(s) 47, 1464, 1669
Bse1I ACTGG 3 cut(s) 41, 99, 1057
Bse3DI GCAATG 1 cut(s) 523
BseBI CCWGG 1 cut(s) 737
BseDI CCNNGG 3 cut(s) 34, 78, 1458
BseGI GGATG 5 cut(s) 448, 769, 865, 1090, 1144
BseLI CCNNNNNNNGG 3 cut(s) 47, 1464, 1669
BseMI GCAATG 1 cut(s) 523
BseMII CTCAG 4 cut(s) 372, 398, 528, 597
BseNI ACTGG 3 cut(s) 41, 99, 1057
BseRI GAGGAG 2 cut(s) 623, 1361
BseXI GCAGC 7 cut(s) 661, 934, 937, 1477, 1505, 1771, 1805
BsgI GTGCAG 1 cut(s) 1242
BshFI GGCC 2 cut(s) 217, 1457
BshNI GGYRCC 1 cut(s) 255
BsiHKAI GWGCWC 2 cut(s) 533, 1516
BsiHKCI CYCGRG 1 cut(s) 339
BsiSI CCGG 2 cut(s) 259, 1658
BslFI GGGAC 3 cut(s) 64, 1039, 1646
BslI CCNNNNNNNGG 3 cut(s) 47, 1464, 1669
BsmAI GTCTC 1 cut(s) 1116
BsmBI CGTCTC 1 cut(s) 1116
BsmFI GGGAC 3 cut(s) 64, 1039, 1646
BsmI GAATGC 1 cut(s) 594
BsnI GGCC 2 cut(s) 217, 1457
BsoBI CYCGRG 1 cut(s) 339
Bsp1286I GDGCHC 2 cut(s) 533, 1516
Bsp1407I TGTACA 1 cut(s) 1279
Bsp1720I GCTNAGC 1 cut(s) 1449
Bsp19I CCATGG 1 cut(s) 1458
BspACI CCGC 5 cut(s) 75, 179, 440, 493, 1753
BspANI GGCC 2 cut(s) 217, 1457
BspCNI CTCAG 4 cut(s) 373, 399, 529, 598
BspHI TCATGA 1 cut(s) 1180
BspLI GGNNCC 3 cut(s) 257, 1611, 1662
BspMAI CTGCAG 4 cut(s) 474, 502, 1495, 1795
BspPI GGATC 6 cut(s) 142, 226, 266, 486, 566, 897
BspQI GCTCTTC 2 cut(s) 537, 1014
BspT107I GGYRCC 1 cut(s) 255
BsrDI GCAATG 1 cut(s) 523
BsrGI TGTACA 1 cut(s) 1279
BsrI ACTGG 3 cut(s) 41, 99, 1057
BssECI CCNNGG 3 cut(s) 34, 78, 1458
BssT1I CCWWGG 3 cut(s) 34, 78, 1458
Bst2UI CCWGG 1 cut(s) 737
Bst4CI ACNGT 3 cut(s) 55, 1333, 1382
Bst6I CTCTTC 4 cut(s) 537, 1014, 1425, 1754
BstAPI GCANNNNNTGC 2 cut(s) 359, 506
BstAUI TGTACA 1 cut(s) 1279
BstBAI YACGTR 1 cut(s) 653
BstC8I GCNNGC 4 cut(s) 219, 300, 569, 1455
BstDEI CTNAG 8 cut(s) 225, 381, 407, 537, 606, 956, 1449, 1668
BstDSI CCRYGG 1 cut(s) 1458
BstF5I GGATG 5 cut(s) 448, 769, 865, 1090, 1144
BstMAI GTCTC 1 cut(s) 1116
BstNI CCWGG 1 cut(s) 737
BstSCI CCNGG 1 cut(s) 735
BstSFI CTRYAG 5 cut(s) 470, 498, 1332, 1491, 1791
BstV1I GCAGC 7 cut(s) 661, 934, 937, 1477, 1505, 1771, 1805
BstV2I GAAGAC 1 cut(s) 1347
BstX2I RGATCY 5 cut(s) 231, 377, 410, 478, 1253
BstYI RGATCY 5 cut(s) 231, 377, 410, 478, 1253
BsuRI GGCC 2 cut(s) 217, 1457
BtgI CCRYGG 1 cut(s) 1458
BtgZI GCGATG 1 cut(s) 649
BtsCI GGATG 5 cut(s) 448, 769, 865, 1090, 1144
BtsI GCAGTG 2 cut(s) 495, 1320
BtsIMutI CAGTG 4 cut(s) 495, 708, 1064, 1320
Cac8I GCNNGC 4 cut(s) 219, 300, 569, 1455
CciI TCATGA 1 cut(s) 1180
Cfr13I GGNCC 6 cut(s) 31, 38, 369, 795, 1660, 1721
CsiI ACCWGGT 1 cut(s) 735
Csp6I GTAC 4 cut(s) 182, 256, 680, 1280
CviAII CATG 5 cut(s) 140, 587, 1031, 1181, 1459
CviQI GTAC 4 cut(s) 182, 256, 680, 1280
DdeI CTNAG 8 cut(s) 225, 381, 407, 537, 606, 956, 1449, 1668
DraIII CACNNNGTG 1 cut(s) 143
Eam1104I CTCTTC 4 cut(s) 537, 1014, 1425, 1754
EarI CTCTTC 4 cut(s) 537, 1014, 1425, 1754
EciI GGCGGA 1 cut(s) 64
Ecl136II GAGCTC 1 cut(s) 1514
Eco130I CCWWGG 3 cut(s) 34, 78, 1458
Eco24I GRGCYC 1 cut(s) 1516
Eco47I GGWCC 6 cut(s) 31, 38, 369, 795, 1660, 1721
Eco53kI GAGCTC 1 cut(s) 1514
Eco57I CTGAAG 3 cut(s) 887, 1641, 1769
Eco72I CACGTG 1 cut(s) 653
Eco88I CYCGRG 1 cut(s) 339
EcoICRI GAGCTC 1 cut(s) 1514
EcoRI GAATTC 1 cut(s) 70
EcoRII CCWGG 1 cut(s) 735
EcoT14I CCWWGG 3 cut(s) 34, 78, 1458
EcoT38I GRGCYC 1 cut(s) 1516
ErhI CCWWGG 3 cut(s) 34, 78, 1458
Esp3I CGTCTC 1 cut(s) 1116
FaeI CATG 5 cut(s) 143, 590, 1034, 1184, 1462
FalI AAGNNNNNCTT 4 cut(s) 711, 743, 1302, 1334
FaqI GGGAC 3 cut(s) 64, 1039, 1646
FatI CATG 5 cut(s) 139, 586, 1030, 1180, 1458
FbaI TGATCA 1 cut(s) 931
Fnu4HI GCNGC 7 cut(s) 675, 923, 926, 1491, 1494, 1785, 1794
FokI GGATG 5 cut(s) 455, 776, 872, 1097, 1151
FriOI GRGCYC 1 cut(s) 1516
Fsp4HI GCNGC 7 cut(s) 675, 923, 926, 1491, 1494, 1785, 1794
FspBI CTAG 1 cut(s) 1817
GluI GCNGC 7 cut(s) 675, 923, 926, 1491, 1494, 1785, 1794
HaeIII GGCC 2 cut(s) 217, 1457
HapII CCGG 2 cut(s) 259, 1658
Hin1II CATG 5 cut(s) 143, 590, 1034, 1184, 1462
HinfI GANTC 6 cut(s) 325, 342, 691, 698, 1208, 1727
HpaII CCGG 2 cut(s) 259, 1658
HphI GGTGA 2 cut(s) 155, 767
Hpy166II GTNNAC 1 cut(s) 1191
Hpy8I GTNNAC 1 cut(s) 1191
HpyCH4III ACNGT 3 cut(s) 55, 1333, 1382
HpyCH4IV ACGT 1 cut(s) 652
HpyF3I CTNAG 8 cut(s) 225, 381, 407, 537, 606, 956, 1449, 1668
HpySE526I ACGT 1 cut(s) 652
Hsp92II CATG 5 cut(s) 143, 590, 1034, 1184, 1462
KpnI GGTACC 1 cut(s) 259
Ksp22I TGATCA 1 cut(s) 931
LguI GCTCTTC 2 cut(s) 537, 1014
LmnI GCTCC 3 cut(s) 495, 1543, 1792
Lsp1109I GCAGC 7 cut(s) 661, 934, 937, 1477, 1505, 1771, 1805
LweI GCATC 4 cut(s) 190, 541, 712, 808
MabI ACCWGGT 1 cut(s) 735
MaeI CTAG 1 cut(s) 1817
MaeII ACGT 1 cut(s) 652
MaeIII GTNAC 2 cut(s) 874, 1826
MfeI CAATTG 2 cut(s) 1127, 1614
MflI RGATCY 5 cut(s) 231, 377, 410, 478, 1253
MhlI GDGCHC 2 cut(s) 533, 1516
MlyI GAGTC 3 cut(s) 351, 1217, 1721
MseI TTAA 9 cut(s) 281, 356, 386, 399, 453, 624, 741, 825, 1008
MslI CAYNNNNRTG 1 cut(s) 144
MspI CCGG 2 cut(s) 259, 1658
MspR9I CCNGG 1 cut(s) 737
MunI CAATTG 2 cut(s) 1127, 1614
Mva1269I GAATGC 1 cut(s) 594
MvaI CCWGG 1 cut(s) 737
NcoI CCATGG 1 cut(s) 1458
NlaIII CATG 5 cut(s) 143, 590, 1034, 1184, 1462
NlaIV GGNNCC 3 cut(s) 257, 1611, 1662
PaeR7I CTCGAG 1 cut(s) 339
PagI TCATGA 1 cut(s) 1180
PciSI GCTCTTC 2 cut(s) 537, 1014
PctI GAATGC 1 cut(s) 594
PfeI GAWTC 3 cut(s) 325, 691, 698
PflMI CCANNNNNTGG 1 cut(s) 47
PkrI GCNGC 7 cut(s) 676, 924, 927, 1492, 1495, 1786, 1795
PleI GAGTC 3 cut(s) 350, 1216, 1721
PmaCI CACGTG 1 cut(s) 653
PmlI CACGTG 1 cut(s) 653
PpsI GAGTC 3 cut(s) 350, 1216, 1721
Ppu21I YACGTR 1 cut(s) 653
Psp124BI GAGCTC 1 cut(s) 1516
Psp6I CCWGG 1 cut(s) 735
PspCI CACGTG 1 cut(s) 653
PspGI CCWGG 1 cut(s) 735
PspN4I GGNNCC 3 cut(s) 257, 1611, 1662
PspPI GGNCC 6 cut(s) 31, 38, 369, 795, 1660, 1721
PsrI GAACNNNNNNTAC 4 cut(s) 1272, 1304, 1623, 1655
PstI CTGCAG 4 cut(s) 474, 502, 1495, 1795
PsuI RGATCY 5 cut(s) 231, 377, 410, 478, 1253
RsaI GTAC 4 cut(s) 183, 257, 681, 1281
RsaNI GTAC 4 cut(s) 182, 256, 680, 1280
RseI CAYNNNNRTG 1 cut(s) 144
SacI GAGCTC 1 cut(s) 1516
SapI GCTCTTC 2 cut(s) 537, 1014
SaqAI TTAA 9 cut(s) 281, 356, 386, 399, 453, 624, 741, 825, 1008
SatI GCNGC 7 cut(s) 675, 923, 926, 1491, 1494, 1785, 1794
Sau96I GGNCC 6 cut(s) 31, 38, 369, 795, 1660, 1721
SchI GAGTC 3 cut(s) 351, 1217, 1721
ScrFI CCNGG 1 cut(s) 737
SduI GDGCHC 2 cut(s) 533, 1516
SexAI ACCWGGT 1 cut(s) 735
SfaNI GCATC 4 cut(s) 190, 541, 712, 808
SfcI CTRYAG 5 cut(s) 470, 498, 1332, 1491, 1791
Sfr274I CTCGAG 1 cut(s) 339
SinI GGWCC 6 cut(s) 31, 38, 369, 795, 1660, 1721
SlaI CTCGAG 1 cut(s) 339
SmiMI CAYNNNNRTG 1 cut(s) 144
SmlI CTYRAG 4 cut(s) 195, 339, 1361, 1538
SmoI CTYRAG 4 cut(s) 195, 339, 1361, 1538
SsiI CCGC 5 cut(s) 75, 179, 440, 493, 1753
SspMI CTAG 1 cut(s) 1817
SstI GAGCTC 1 cut(s) 1516
StyD4I CCNGG 1 cut(s) 735
StyI CCWWGG 3 cut(s) 34, 78, 1458
TaaI ACNGT 3 cut(s) 55, 1333, 1382
TaiI ACGT 1 cut(s) 655
TaqI TCGA 3 cut(s) 9, 334, 340
TatI WGTACW 1 cut(s) 1279
TfiI GAWTC 3 cut(s) 325, 691, 698
Tru1I TTAA 9 cut(s) 281, 356, 386, 399, 453, 624, 741, 825, 1008
Tru9I TTAA 9 cut(s) 281, 356, 386, 399, 453, 624, 741, 825, 1008
TscAI CASTG 4 cut(s) 502, 708, 1064, 1320
TseI GCWGC 7 cut(s) 674, 922, 925, 1490, 1493, 1784, 1793
TspDTI ATGAA 8 cut(s) 162, 698, 1010, 1169, 1197, 1353, 1416, 1436
TspGWI ACGGA 2 cut(s) 588, 1622
TspRI CASTG 4 cut(s) 502, 708, 1064, 1320
Van91I CCANNNNNTGG 1 cut(s) 47
VpaK11BI GGWCC 6 cut(s) 31, 38, 369, 795, 1660, 1721
XapI RAATTY 7 cut(s) 70, 128, 449, 801, 843, 1046, 1101
XcmI CCANNNNNNNNNTGG 1 cut(s) 41
XhoI CTCGAG 1 cut(s) 339
XspI CTAG 1 cut(s) 1817
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.